Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCTC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  NC_000913/3958167‑3958353

CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CC                                                                                                <  SRR4302533.6243624/94‑1 (MQ=60)

 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC                                                                                               <  SRR4302533.3148679/94‑1 (MQ=60)

 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC                                                                                               <  SRR4302533.3440200/94‑1 (MQ=60)

 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC                                                                                               >  SRR4302533.1956587/1‑94 (MQ=60)

 GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCC                                                                                               <  SRR4302533.4476048/94‑1 (MQ=60)

    TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CC                                                                                           >  SRR4302533.4837055/1‑94 (MQ=60)

     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCC                                                                                          <  SRR4302533.1526402/94‑1 (MQ=60)

     TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCC                                                                                          >  SRR4302533.3932492/1‑94 (MQ=60)

        GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCC                                                                                       >  SRR4302533.4067563/1‑94 (MQ=60)

         TCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcg                                                                                      >  SRR4302533.871347/1‑92 (MQ=60)

            TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttc                                                                                   >  SRR4302533.3292947/1‑89 (MQ=60)

             CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGA                                                                                  >  SRR4302533.4596215/1‑94 (MQ=60)

             CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCCGTCGA                                                                                  >  SRR4302533.5124261/1‑94 (MQ=60)

             CTCTCTCTGATTTAAACAACCGCAGCCAACCGGTTTGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCCCCCC‑CCCCCGTTC                                                                                    <  SRR4302533.2111921/94‑1 (MQ=60)

               CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcgtccgaa                                                                                >  SRR4302533.3784354/1‑86 (MQ=60)

               CTCCCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAA                                                                                 <  SRR4302533.4496911/94‑1 (MQ=60)

                TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAG                                                                                <  SRR4302533.2381389/94‑1 (MQ=60)

                TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAG                                                                                >  SRR4302533.785300/1‑94 (MQ=60)

                TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttcctac                                                                               >  SRR4302533.3271104/1‑85 (MQ=60)

                 CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGA                                                                               <  SRR4302533.1750827/94‑1 (MQ=60)

                  TCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGAT                                                                              <  SRR4302533.1266413/94‑1 (MQ=60)

                   CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATT                                                                             <  SRR4302533.4784224/94‑1 (MQ=60)

                   CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATT                                                                             >  SRR4302533.511047/1‑94 (MQ=60)

                   CTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATT                                                                             >  SRR4302533.572604/1‑94 (MQ=60)

                   CTAATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCGCACTCAAAGGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATT                                                                             <  SRR4302533.3259853/94‑1 (MQ=60)

                     GATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAG                                                                          <  SRR4302533.5849098/94‑1 (MQ=60)

                      ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAG                                                                          <  SRR4302533.3378340/94‑1 (MQ=60)

                        TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGGA                                                                        >  SRR4302533.4968060/1‑94 (MQ=60)

                        TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCA                                                                        <  SRR4302533.4487076/94‑1 (MQ=60)

                         TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGcttcgaaattgaaagaa                                                                      >  SRR4302533.4208922/1‑77 (MQ=60)

                          AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAAT                                                                      >  SRR4302533.1896420/1‑94 (MQ=60)

                          AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttcgcagattgtgcaca                                                                     >  SRR4302533.2246914/1‑75 (MQ=60)

                             CATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACA                                                                   >  SRR4302533.1662224/1‑94 (MQ=60)

                               TCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACC                                                                 <  SRR4302533.3757879/94‑1 (MQ=60)

                                CCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCT                                                                <  SRR4302533.1435514/94‑1 (MQ=60)

                                CCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTA                                                               <  SRR4302533.3501803/94‑1 (MQ=60)

                                 CGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTA                                                               <  SRR4302533.5728242/94‑1 (MQ=60)

                                 CGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTAT                                                              >  SRR4302533.4245515/1‑94 (MQ=60)

                                  GCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTAT                                                              >  SRR4302533.2846099/1‑94 (MQ=60)

                                   CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATG                                                             >  SRR4302533.1885084/1‑94 (MQ=60)

                                    AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGC                                                            >  SRR4302533.2317209/1‑94 (MQ=60)

                                    AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGC                                                            <  SRR4302533.6003848/94‑1 (MQ=60)

                                    AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATCC                                                            >  SRR4302533.388385/1‑94 (MQ=60)

                                     GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCG                                                           <  SRR4302533.3169899/94‑1 (MQ=60)

                                     GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCCTTCGAAGATTGAGCAAAACACCTATGCG                                                           >  SRR4302533.344293/1‑94 (MQ=60)

                                       CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTTAGCAATACACCCATGCGGC                                                         >  SRR4302533.1300907/1‑94 (MQ=60)

                                       CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcttccgaaatttaggcaaaaaacccatcgctt                                                        >  SRR4302533.1481494/1‑62 (MQ=60)

                                       CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcgttggaagattggggaaaacacccatgcgtt                                                        >  SRR4302533.1342191/1‑62 (MQ=60)

                                        AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCAC‑CCCCCcgttctaagcttaagacatacacctattcgtct                                                       >  SRR4302533.1000943/1‑61 (MQ=60)

                                           CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA                                                     <  SRR4302533.5076575/94‑1 (MQ=60)

                                           CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA                                                     >  SRR4302533.5879301/1‑94 (MQ=60)

                                           CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCCAAGATTCAGCAATAACCCTATTCGTCTAAC                                                     >  SRR4302533.3938397/1‑94 (MQ=60)

                                           CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCCTCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAA                                                     >  SRR4302533.3545014/1‑94 (MQ=60)

                                           CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcggtggacgatttagaagaacaccttttggggcaca                                                    >  SRR4302533.4429518/1‑58 (MQ=60)

                                           CGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccgtgctggatctcgcaaaaaaccctttcgtcttaa                                                    >  SRR4302533.268066/1‑58 (MQ=60)

                                            GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC                                                    >  SRR4302533.1006531/1‑94 (MQ=60)

                                            GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCcgttcaaagctttaaaaataaacctattcgacaaaac                                                   >  SRR4302533.933491/1‑57 (MQ=60)

                                              GTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TCCCCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACC                                                   <  SRR4302533.181381/94‑1 (MQ=60)

                                               TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC                                                 <  SRR4302533.2527843/94‑1 (MQ=60)

                                               TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC                                                 <  SRR4302533.2282529/94‑1 (MQ=60)

                                                AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGCAGATTGAGCAATACACCTATGCGTCTAAACCCCG                                                >  SRR4302533.3036953/1‑94 (MQ=60)

                                                 GCGGCTTACCCGCGGCCACAATAAAAGGCGATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGG                                               <  SRR4302533.4437476/94‑1 (MQ=57)

                                                  CGGCTTACACGCGGTCACATCCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGC                                              >  SRR4302533.1937600/1‑94 (MQ=60)

                                                   GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCCTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCA                                             >  SRR4302533.533700/1‑94 (MQ=60)

                                                     CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAA                                           <  SRR4302533.6262751/94‑1 (MQ=60)

                                                     CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttccaagattgacgcaacaaccgcccccgctcaacaccgcccaa                                          >  SRR4302533.4677590/1‑48 (MQ=60)

                                                     CTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAC                                          >  SRR4302533.3064691/1‑94 (MQ=60)

                                                      TTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGCGTGAGCAATACACCTATTCGTCTTAACCCCGGCCAAC                                          >  SRR4302533.5597385/1‑94 (MQ=60)

                                                      TTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTAGGCAATACACCAATCCGTCTAAACCCCGCCCAAA                                          >  SRR4302533.1807828/1‑94 (MQ=60)

                                                          ACNCNGNTACATTCAAATCNCANTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTNAACCCCGGCCAACAACA                                      <  SRR4302533.3399744/94‑1 (MQ=60)

                                                          ACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACA                                      >  SRR4302533.1778566/1‑94 (MQ=60)

                                                          ACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAA                                     <  SRR4302533.5365834/94‑1 (MQ=60)

                                                           CGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAA                                     <  SRR4302533.3215808/94‑1 (MQ=60)

                                                           CGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCCAAAATTGAGCAATACACCTATGGGTCTAAACCCCGGCCAACAACAA                                     >  SRR4302533.1587928/1‑94 (MQ=60)

                                                           CGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAG                                    <  SRR4302533.6020850/94‑1 (MQ=60)

                                                             CGGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGC                                   >  SRR4302533.4039733/1‑94 (MQ=60)

                                                              GGTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT                                  <  SRR4302533.1041259/94‑1 (MQ=60)

                                                              GGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCcacaaaaaaaag                                 >  SRR4302533.4679988/1‑82 (MQ=60)

                                                               GTCACATTCAAATGCGATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG                                 <  SRR4302533.4465974/94‑1 (MQ=60)

                                                               GTCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGACTGAGAAAAACACCTATGCGTCTAAACCCCGGCCAccaaacaactg                                 >  SRR4302533.254888/1‑83 (MQ=60)

                                                               GTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAACTGT                                >  SRR4302533.1214133/1‑94 (MQ=60)

                                                                TCACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCCTTCGAAGATTGAGCAAAACCCCTATGCGTCTAAACCCCCGCCAAACACAAGCCGT                                >  SRR4302533.2086410/1‑94 (MQ=55)

                                                                 CACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCcttc                               >  SRR4302533.2854695/1‑90 (MQ=60)

                                                                 CACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTC                               <  SRR4302533.2753636/94‑1 (MQ=60)

                                                                 CACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG                              <  SRR4302533.37071/94‑1 (MQ=60)

                                                                  ACATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATTCGTCTAAACCCCGGCCAACAACAAGCTGccc                              >  SRR4302533.4799650/1‑91 (MQ=60)

                                                                  ACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCccttcggagaattagcaacaaccctatgcgtctaaaacccgcccaaaaacaaacctgcg                             >  SRR4302533.3529113/1‑35 (MQ=59)

                                                                  ACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGA                             >  SRR4302533.5145218/1‑94 (MQ=60)

                                                                  ACATGCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG                              <  SRR4302533.2133935/94‑1 (MQ=60)

                                                                   CATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGA                             <  SRR4302533.3517563/94‑1 (MQ=60)

                                                                    ATTCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAA                            <  SRR4302533.1191172/94‑1 (MQ=60)

                                                                     TTCAAATGCGATTCTGCTACAAA‑C‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT                           <  SRR4302533.5955767/94‑1 (MQ=60)

                                                                      TCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT                          <  SRR4302533.1904031/94‑1 (MQ=60)

                                                                      TCAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATT                          <  SRR4302533.1892545/94‑1 (MQ=60)

                                                                      TCAAATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC                         <  SRR4302533.5518572/94‑1 (MQ=60)

                                                                       CAAATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTAGGGGTCTAAACACCCGCCCACAACAAGCctacgaattc                         >  SRR4302533.1355767/1‑84 (MQ=51)

                                                                         AATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCATTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGT                       >  SRR4302533.2847978/1‑94 (MQ=60)

                                                                         AATGCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTT                      <  SRR4302533.144521/94‑1 (MQ=60)

                                                                          ATGCGATTGTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTT                      <  SRR4302533.5888760/94‑1 (MQ=60)

                                                                          ATGCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAAATTTAGCAAAACACCTATGCGTCTAAACCCCGCCCAACAACAAGCTGTCAAATTCTTT                      >  SRR4302533.202004/1‑94 (MQ=60)

                                                                            GCGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAC                    >  SRR4302533.935495/1‑94 (MQ=60)

                                                                            GCGATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC                   <  SRR4302533.6140104/94‑1 (MQ=60)

                                                                             CGATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC                   <  SRR4302533.3171107/94‑1 (MQ=60)

                                                                              GATTCTGCTAC‑AACC‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG                  <  SRR4302533.5435856/94‑1 (MQ=60)

                                                                              GATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG                  >  SRR4302533.2129833/1‑94 (MQ=60)

                                                                              GATTCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG                  <  SRR4302533.1065986/94‑1 (MQ=60)

                                                                               ATTCTGCTAC‑AA‑T‑‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGC                >  SRR4302533.3369288/1‑94 (MQ=60)

                                                                                 TCTGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCC               >  SRR4302533.1931251/1‑94 (MQ=60)

                                                                                   TGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC             >  SRR4302533.1835642/1‑94 (MQ=60)

                                                                                   TGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC             <  SRR4302533.2647592/94‑1 (MQ=60)

                                                                                   TGCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCC             <  SRR4302533.3114909/94‑1 (MQ=60)

                                                                                    GCTAC‑AA‑TC‑CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAAAACCAGCTGTCGAATTTGTTACCCGCCCCC            >  SRR4302533.2576699/1‑94 (MQ=60)

                                                                                     CTAC‑AA‑T‑‑CC‑C‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCC         >  SRR4302533.6231227/1‑94 (MQ=60)

                                                                                                CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC   >  SRR4302533.4600319/1‑94 (MQ=60)

                                                                                                CCCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC   >  SRR4302533.351164/1‑94 (MQ=60)

                                                                                                CCCC‑CCCCCGTTCGAAGATTGAGCAAAACACCTATGCGTCTAAACCCCGGCCAACAACAAACTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC   >  SRR4302533.1325307/1‑94 (MQ=60)

                                                                                                 CCC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  SRR4302533.5725149/1‑94 (MQ=60)

CGATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTAC‑AA‑T‑‑CCTC‑CCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT  >  NC_000913/3958167‑3958353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`