Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,100,603	A→G	F90L (TTC→CTC)	yggH ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,100,603	0	A	G	100.0%	837.1 / NA	260	F90L (TTC→CTC)	yggH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (143/117); total (143/117)

Only 100 of 271 total aligned reads displayed.

GACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAA  >  NC_000913/3100513‑3100692

gACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGt                                                                                         >  1:1855624/1‑93 (MQ=255)

 acacATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTc                                                                                        <  1:4099230/93‑1 (MQ=255)

 acacATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTc                                                                                        <  1:3702897/93‑1 (MQ=255)

 acacATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTc                                                                                        <  2:2706842/93‑1 (MQ=255)

 acacATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTc                                                                                        <  1:2688638/93‑1 (MQ=255)

   acaTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCt                                                                                      >  1:1381623/1‑93 (MQ=255)

   acaTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCt                                                                                      <  1:2129757/93‑1 (MQ=255)

     aTCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGc                                                                                    >  2:4636939/1‑93 (MQ=255)

      tCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCt                                                                                   >  2:3272949/1‑93 (MQ=255)

      tCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCt                                                                                   <  1:2847843/93‑1 (MQ=255)

      ccACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCt                                                                                   <  1:3069326/92‑1 (MQ=255)

       cACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTc                                                                                  <  1:6072365/93‑1 (MQ=255)

        aCGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCa                                                                                 >  2:1572922/1‑93 (MQ=255)

        aCGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCa                                                                                 <  2:2921816/93‑1 (MQ=255)

        aCGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCa                                                                                 >  1:1658868/1‑93 (MQ=255)

          gcgcAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAgg                                                                               >  1:5149448/1‑93 (MQ=255)

            gcAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAgggg                                                                             >  2:2362985/1‑92 (MQ=255)

            gcAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGc                                                                             >  2:477755/1‑93 (MQ=255)

               ggTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAt                                                                          >  1:5923841/1‑93 (MQ=255)

               ggTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAt                                                                          >  2:5914283/1‑93 (MQ=255)

               ggTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAt                                                                          >  2:5231300/1‑93 (MQ=255)

                gTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATc                                                                         <  1:2460752/93‑1 (MQ=255)

                gTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATc                                                                         <  1:2070788/93‑1 (MQ=255)

                gTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATc                                                                         >  1:2737287/1‑93 (MQ=255)

                  tGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCtt                                                                       >  2:25971/1‑93 (MQ=255)

                  tGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCtt                                                                       >  2:1385494/1‑93 (MQ=255)

                   gCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCttt                                                                      <  2:5149448/93‑1 (MQ=255)

                   gCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCttt                                                                      >  1:4636463/1‑93 (MQ=255)

                     ttAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAg                                                                    >  1:5996901/1‑93 (MQ=255)

                      tAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGc                                                                   >  2:84402/1‑93 (MQ=255)

                      tAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGCAGGTCCTGCTCAGGGCGATCTTTAGc                                                                   >  1:4871476/1‑93 (MQ=255)

                      tAAACCTTCTTCATGCACAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGc                                                                   <  1:907762/93‑1 (MQ=255)

                        aaCCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCa                                                                 >  1:1055383/1‑93 (MQ=255)

                        aaCCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCa                                                                 <  1:3755072/93‑1 (MQ=255)

                         aCCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAt                                                                <  1:3838652/93‑1 (MQ=255)

                         aCCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAt                                                                >  2:3109227/1‑93 (MQ=255)

                          ccTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAtt                                                               >  1:4732612/1‑93 (MQ=255)

                          ccTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAtt                                                               >  1:1931957/1‑93 (MQ=255)

                          ccTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAtt                                                               <  2:818623/93‑1 (MQ=255)

                            ttcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGc                                                             <  2:2612169/93‑1 (MQ=255)

                            ttcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGc                                                             >  2:3704786/1‑93 (MQ=255)

                            ttcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGc                                                             >  1:1105624/1‑93 (MQ=255)

                            ttcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGc                                                             >  1:1275674/1‑93 (MQ=255)

                            ttcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGc                                                             <  1:1424866/93‑1 (MQ=255)

                             tcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGcc                                                            >  1:5046471/1‑93 (MQ=255)

                             tcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGcc                                                            <  1:2295490/93‑1 (MQ=255)

                             tcttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGcc                                                            >  1:407887/1‑93 (MQ=255)

                              cttcATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGcca                                                           <  2:1776513/93‑1 (MQ=255)

                                 cATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGccacca                                                        >  1:2581839/1‑93 (MQ=255)

                                  aTGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAg                                                       >  1:3975346/1‑93 (MQ=255)

                                   tGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGc                                                      >  2:1252355/1‑93 (MQ=255)

                                    gcgcAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCg                                                     <  1:342334/93‑1 (MQ=255)

                                     cgcAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGa                                                    <  1:6276701/93‑1 (MQ=255)

                                        aGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGc                                                 <  1:5667859/93‑1 (MQ=255)

                                        aGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGc                                                 <  2:4315706/93‑1 (MQ=255)

                                         gAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcc                                                <  1:4559176/93‑1 (MQ=255)

                                           aGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcccc                                              >  2:5820833/1‑93 (MQ=255)

                                           aGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGcccc                                              >  1:2909216/1‑93 (MQ=255)

                                              cAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAt                                           <  1:4230657/93‑1 (MQ=255)

                                              cAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAt                                           >  1:6198656/1‑93 (MQ=255)

                                              cAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAt                                           <  2:4520962/93‑1 (MQ=255)

                                               aGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATg                                          >  2:5842815/1‑93 (MQ=255)

                                               aGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATg                                          >  2:549967/1‑93 (MQ=255)

                                               aGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATg                                          >  2:1622329/1‑93 (MQ=255)

                                                ggCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGc                                         <  1:1196167/93‑1 (MQ=255)

                                                   acgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCaa                                      >  2:1700184/1‑93 (MQ=255)

                                                    cgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCaaa                                     >  1:5282438/1‑93 (MQ=255)

                                                    cgcacCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCaaa                                     >  2:2655965/1‑93 (MQ=255)

                                                         cAACGTCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCaa                                <  2:318504/93‑1 (MQ=255)

                                                         cAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCaa                                <  2:6223042/93‑1 (MQ=255)

                                                         cAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCaa                                <  2:2195877/93‑1 (MQ=255)

                                                          aaCGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAt                               <  1:1602473/93‑1 (MQ=255)

                                                            cGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAtct                             >  2:3838981/1‑93 (MQ=255)

                                                               ccGGTGAATGCACTTCAATGCCGTGGAGGTCCTGCTCAGGGCGATCGTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCaa                          >  2:5074498/1‑93 (MQ=255)

                                                               ccGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCaa                          >  1:3628342/1‑93 (MQ=255)

                                                               ccGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCaa                          >  2:5360883/1‑93 (MQ=255)

                                                               ccGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCaa                          <  2:3525864/93‑1 (MQ=255)

                                                                cGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAg                         >  1:3457458/1‑93 (MQ=255)

                                                                cGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAg                         >  2:208054/1‑93 (MQ=255)

                                                                  gTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCg                       >  2:366096/1‑93 (MQ=255)

                                                                   tGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGt                      >  2:4067642/1‑93 (MQ=255)

                                                                    gAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTc                     >  1:5610348/1‑93 (MQ=255)

                                                                    gAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTc                     >  2:5624142/1‑93 (MQ=255)

                                                                      aTGCACTTCAATGACGAGGGTGTCCTGCTCAGGGCGATCTTTAGCCATTGCCTCCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAc                   <  2:62028/93‑1 (MQ=255)

                                                                        gCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAcca                 <  2:1912339/93‑2 (MQ=255)

                                                                        gCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCg                 >  2:205359/1‑93 (MQ=255)

                                                                         cACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCgg                <  2:6040138/93‑1 (MQ=255)

                                                                          aCTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGgc               >  2:3999689/1‑93 (MQ=255)

                                                                           cTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGgcg              >  2:2462701/1‑93 (MQ=255)

                                                                           cTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGgcg              >  1:3176501/1‑93 (MQ=255)

                                                                              cAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCtt           >  1:5362682/1‑93 (MQ=255)

                                                                                 tGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCAc        <  2:3929902/93‑1 (MQ=255)

                                                                                  gCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACg       >  1:955986/1‑93 (MQ=255)

                                                                                  gCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACg       <  1:4725851/93‑1 (MQ=255)

                                                                                  gCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACg       <  2:4129204/93‑1 (MQ=255)

                                                                                    cGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGc     >  2:3394458/1‑93 (MQ=255)

                                                                                    cGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGc     >  1:2893881/1‑93 (MQ=255)

                                                                                     gaggagGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGcc    >  1:4501217/1‑93 (MQ=255)

                                                                                      aggaggTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCa   >  1:1544413/1‑93 (MQ=255)

                                                                                      aggaggTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCa   <  1:2354332/93‑1 (MQ=255)

GACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAA  >  NC_000913/3100513‑3100692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAA  >  NC_000913/3100510‑3100695

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAG                                                                                              <  SRR4302533.2203588/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAG                                                                                              <  SRR4302533.654920/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGCGAATGCACTTCAATGCCGAGGAG                                                                                              >  SRR4302533.5431265/1‑94 (MQ=60)

 GTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGG                                                                                             <  SRR4302533.2634219/94‑1 (MQ=60)

  TGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGT                                                                                            <  SRR4302533.3936268/94‑1 (MQ=60)

  TGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGT                                                                                            >  SRR4302533.1866940/1‑94 (MQ=60)

    ACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCC                                                                                          <  SRR4302533.2705122/94‑1 (MQ=60)

    ACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCC                                                                                          <  SRR4302533.3725639/94‑1 (MQ=60)

    ACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCC                                                                                          <  SRR4302533.4124180/94‑1 (MQ=60)

     CACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCT                                                                                         >  SRR4302533.1389941/1‑94 (MQ=60)

     CACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCT                                                                                         >  SRR4302533.2319335/1‑94 (MQ=60)

      ACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTG                                                                                        >  SRR4302533.4743186/1‑94 (MQ=60)

      ACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTG                                                                                        <  SRR4302533.2142891/94‑1 (MQ=60)

        ATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCT                                                                                      >  SRR4302533.143041/1‑94 (MQ=60)

         TCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTC                                                                                     <  SRR4302533.2865367/94‑1 (MQ=60)

         CCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTC                                                                                     <  SRR4302533.3088171/94‑1 (MQ=60)

          CACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCA                                                                                    <  SRR4302533.6109101/94‑1 (MQ=60)

          CACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCA                                                                                    >  SRR4302533.6107979/1‑94 (MQ=60)

          CACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCA                                                                                    >  SRR4302533.1668903/1‑94 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                  <  SRR4302533.798484/94‑1 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                  >  SRR4302533.5326612/1‑94 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                  >  SRR4302533.5180560/1‑94 (MQ=60)

            CGCGCAGGTTGCTTAAACCTTCTTCAGGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGG                                                                                  <  SRR4302533.5264381/94‑1 (MQ=60)

             GCGCAGGGTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGG                                                                                 <  SRR4302533.4301911/94‑1 (MQ=60)

              CGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGC                                                                                <  SRR4302533.4884659/94‑1 (MQ=60)

              CGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGC                                                                                >  SRR4302533.4651659/1‑94 (MQ=60)

               GCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCGCCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCG                                                                               <  SRR4302533.6281049/94‑1 (MQ=60)

               GCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCG                                                                               <  SRR4302533.4122188/94‑1 (MQ=60)

                CAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGA                                                                              >  SRR4302533.1926347/1‑94 (MQ=60)

                 AGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAT                                                                             >  SRR4302533.1212413/1‑94 (MQ=60)

                 AGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAT                                                                             >  SRR4302533.2404181/1‑94 (MQ=60)

                 AGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGAT                                                                             >  SRR4302533.5959647/1‑94 (MQ=60)

                  GGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATC                                                                            >  SRR4302533.2754074/1‑94 (MQ=60)

                   GTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCT                                                                           >  SRR4302533.3613103/1‑94 (MQ=60)

                   GTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCT                                                                           <  SRR4302533.2083542/94‑1 (MQ=60)

                   GTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCT                                                                           <  SRR4302533.2475937/94‑1 (MQ=60)

                   GTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCT                                                                           >  SRR4302533.2253721/1‑94 (MQ=60)

                     TGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTT                                                                         <  SRR4302533.3658490/94‑1 (MQ=60)

                     TGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTT                                                                         >  SRR4302533.4664557/1‑94 (MQ=60)

                     TGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTT                                                                         <  SRR4302533.4539733/94‑1 (MQ=60)

                     TGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTT                                                                         >  SRR4302533.3009126/1‑94 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                       >  SRR4302533.3202479/1‑94 (MQ=60)

                       CTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAG                                                                       >  SRR4302533.6033222/1‑94 (MQ=60)

                        TTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGCAGGTCCTGCTCAGGGCGATCTTTAGC                                                                      >  SRR4302533.4900996/1‑94 (MQ=60)

                         TAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCC                                                                     >  SRR4302533.2164986/1‑94 (MQ=60)

                         TAAACCTTCTTCATGCACAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCC                                                                     <  SRR4302533.913086/94‑1 (MQ=60)

                          AAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCA                                                                    >  SRR4302533.3733320/1‑94 (MQ=60)

                          AAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCA                                                                    >  SRR4302533.1061591/1‑94 (MQ=60)

                          AAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCA                                                                    <  SRR4302533.1716090/94‑1 (MQ=60)

                           AACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAT                                                                   <  SRR4302533.4373365/94‑1 (MQ=60)

                           AACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCAT                                                                   <  SRR4302533.3778086/94‑1 (MQ=60)

                            ACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATT                                                                  <  SRR4302533.3862103/94‑1 (MQ=60)

                            ACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATT                                                                  >  SRR4302533.1943742/1‑94 (MQ=60)

                            ACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATT                                                                  <  SRR4302533.2936897/94‑1 (MQ=60)

                            ACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATT                                                                  >  SRR4302533.3463338/1‑94 (MQ=60)

                            ACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATT                                                                  >  SRR4302533.4761303/1‑94 (MQ=60)

                            ACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCACT                                                                  >  SRR4302533.4655644/1‑94 (MQ=60)

                             CCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTG                                                                 >  SRR4302533.6110420/1‑94 (MQ=60)

                             CCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTG                                                                 >  SRR4302533.3142547/1‑94 (MQ=60)

                             CCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTG                                                                 <  SRR4302533.5127219/94‑1 (MQ=60)

                              CTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGC                                                                >  SRR4302533.1283344/1‑94 (MQ=60)

                              CTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGC                                                                >  SRR4302533.4702813/1‑94 (MQ=60)

                              CTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGC                                                                >  SRR4302533.1112179/1‑94 (MQ=60)

                               TTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCC                                                               <  SRR4302533.1433484/94‑1 (MQ=60)

                               TTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCC                                                               >  SRR4302533.5076998/1‑94 (MQ=60)

                               TTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCC                                                               >  SRR4302533.410338/1‑94 (MQ=60)

                               TTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCC                                                               >  SRR4302533.5936958/1‑94 (MQ=60)

                                TCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCA                                                              <  SRR4302533.2309705/94‑1 (MQ=60)

                                 TTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCAC                                                             <  SRR4302533.849628/94‑1 (MQ=60)

                                 CTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCAC                                                             <  SRR4302533.2763554/94‑1 (MQ=60)

                                 CTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCAC                                                             >  SRR4302533.932686/1‑94 (MQ=60)

                                  TTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACC                                                            <  SRR4302533.4151653/94‑1 (MQ=60)

                                   TCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCA                                                           >  SRR4302533.4097391/1‑94 (MQ=60)

                                   TCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCA                                                           >  SRR4302533.2597720/1‑94 (MQ=60)

                                    CATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAG                                                          >  SRR4302533.3999548/1‑94 (MQ=60)

                                    CATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAG                                                          >  SRR4302533.5133677/1‑94 (MQ=60)

                                     ATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGC                                                         <  SRR4302533.4770946/94‑1 (MQ=60)

                                     ATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGC                                                         <  SRR4302533.6027696/94‑1 (MQ=60)

                                       GCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGA                                                       <  SRR4302533.1741622/94‑1 (MQ=60)

                                       GCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGA                                                       <  SRR4302533.2896454/94‑1 (MQ=60)

                                       GCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGA                                                       <  SRR4302533.344423/94‑1 (MQ=60)

                                        CGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGAC                                                      <  SRR4302533.5779900/94‑1 (MQ=60)

                                        CGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGAC                                                      <  SRR4302533.6314181/94‑1 (MQ=60)

                                        CGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGAC                                                      >  SRR4302533.5976678/1‑94 (MQ=60)

                                         GCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACG                                                     <  SRR4302533.1543401/94‑1 (MQ=60)

                                           AGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCC                                                   <  SRR4302533.5702096/94‑1 (MQ=60)

                                            GAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCC                                                  <  SRR4302533.4586827/94‑1 (MQ=60)

                                            GAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCC                                                  <  SRR4302533.6299864/94‑1 (MQ=60)

                                             AAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCC                                                 >  SRR4302533.2927075/1‑94 (MQ=60)

                                              AGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCC                                                <  SRR4302533.547666/94‑1 (MQ=60)

                                              AGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCC                                                <  SRR4302533.3684045/94‑1 (MQ=60)

                                              AGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCC                                                >  SRR4302533.2667305/1‑94 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAT                                              <  SRR4302533.1629689/94‑1 (MQ=60)

                                                CCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCAT                                              >  SRR4302533.6235840/1‑94 (MQ=60)

                                                 CAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATG                                             <  SRR4302533.3904681/94‑1 (MQ=60)

                                                 CAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATG                                             <  SRR4302533.4256230/94‑1 (MQ=60)

                                                  AGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGC                                            <  SRR4302533.2703664/94‑1 (MQ=60)

                                                   GGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCC                                           <  SRR4302533.1203355/94‑1 (MQ=60)

                                                      ACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAA                                        >  SRR4302533.3375337/1‑94 (MQ=60)

                                                      ACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAA                                        >  SRR4302533.5314085/1‑94 (MQ=60)

                                                       CGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAA                                       >  SRR4302533.1176434/1‑94 (MQ=60)

                                                        GCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAAC                                      <  SRR4302533.2386346/94‑1 (MQ=60)

                                                            CAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAT                                  >  SRR4302533.1512606/1‑94 (MQ=60)

                                                            CAACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAAT                                  >  SRR4302533.2859344/1‑94 (MQ=60)

                                                             AACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATC                                 >  SRR4302533.3801174/1‑94 (MQ=60)

                                                             AACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATC                                 <  SRR4302533.1612179/94‑1 (MQ=60)

                                                              ACGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCT                                <  SRR4302533.3153183/94‑1 (MQ=60)

                                                               CGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTC                               <  SRR4302533.1651456/94‑1 (MQ=60)

                                                               CGCCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTC                               <  SRR4302533.1867590/94‑1 (MQ=60)

                                                                 CCCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAA                             >  SRR4302533.3650670/1‑94 (MQ=60)

                                                                  CCGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAG                            >  SRR4302533.3478804/1‑94 (MQ=60)

                                                                   CGGTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGC                           >  SRR4302533.3604425/1‑94 (MQ=60)

                                                                     GTGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGT                         <  SRR4302533.3814005/94‑1 (MQ=60)

                                                                      TGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTC                        >  SRR4302533.1611024/1‑94 (MQ=60)

                                                                      TGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTC                        >  SRR4302533.4028655/1‑94 (MQ=60)

                                                                      TGAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTC                        >  SRR4302533.5644256/1‑94 (MQ=60)

                                                                       GAATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCA                       <  SRR4302533.386321/94‑1 (MQ=60)

                                                                        AATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAC                      >  SRR4302533.1111649/1‑94 (MQ=60)

                                                                        AATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCAC                      <  SRR4302533.1403766/94‑1 (MQ=60)

                                                                         ATGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACC                     >  SRR4302533.2721272/1‑94 (MQ=60)

                                                                          TGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCG                    <  SRR4302533.2091458/94‑1 (MQ=60)

                                                                          TGCACTTCAATGCCGAGGAGGTCCTGCTCAGGGAGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCG                    <  SRR4302533.5324549/94‑1 (MQ=60)

                                                                             ACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCG                 >  SRR4302533.2140698/1‑94 (MQ=60)

                                                                             ACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCG                 >  SRR4302533.3196040/1‑94 (MQ=60)

                                                                             ACTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCG                 >  SRR4302533.2477413/1‑94 (MQ=60)

                                                                              CTTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGC                >  SRR4302533.4950237/1‑94 (MQ=60)

                                                                               TTCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCT               <  SRR4302533.291759/94‑1 (MQ=60)

                                                                                TCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTT              >  SRR4302533.2873278/1‑94 (MQ=60)

                                                                                TCAATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTT              >  SRR4302533.5394889/1‑94 (MQ=60)

                                                                                  AATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCA            >  SRR4302533.5421735/1‑94 (MQ=60)

                                                                                  AATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCA            <  SRR4302533.5013187/94‑1 (MQ=60)

                                                                                  AATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCA            <  SRR4302533.4144238/94‑1 (MQ=60)

                                                                                   ATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCAC           <  SRR4302533.4755872/94‑1 (MQ=60)

                                                                                   ATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCAC           <  SRR4302533.1173649/94‑1 (MQ=60)

                                                                                   ATGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCAC           <  SRR4302533.2562859/94‑1 (MQ=60)

                                                                                    TGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACG          >  SRR4302533.6034038/1‑94 (MQ=60)

                                                                                    TGCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACG          >  SRR4302533.961600/1‑94 (MQ=60)

                                                                                     GCCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGG         <  SRR4302533.4754505/94‑1 (MQ=60)

                                                                                      CCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGC        >  SRR4302533.2911663/1‑94 (MQ=60)

                                                                                      CCGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGC        >  SRR4302533.2064623/1‑94 (MQ=60)

                                                                                       CGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCC       >  SRR4302533.4528484/1‑94 (MQ=60)

                                                                                       CGAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCC       >  SRR4302533.1327764/1‑94 (MQ=60)

                                                                                        GAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCA      <  SRR4302533.5662960/94‑1 (MQ=60)

                                                                                        GAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCA      >  SRR4302533.1553717/1‑94 (MQ=60)

                                                                                        GAGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCA      >  SRR4302533.1270773/1‑94 (MQ=60)

                                                                                         AGGAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAA     <  SRR4302533.2368890/94‑1 (MQ=60)

                                                                                           GAGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACTCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAA   >  SRR4302533.4466526/1‑94 (MQ=60)

                                                                                            AGGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAA  <  SRR4302533.1257233/94‑1 (MQ=60)

CGTGACACATCACGCGCAGGTTGCTTAAACCTTCTTCATGCGCAGAAGCCAGGCACGCACCAACGCCCGGTGAATGCACTTCAATGCCGAGGAAGTCCTGCTCAGGGCGATCTTTAGCCATTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAA  >  NC_000913/3100510‑3100695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`