Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,112,779 A→G S779P (TCC→CCC)  b2973 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,112,7790AG100.0% 684.0 / NA 212S779P (TCC→CCC) b2973hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (109/103);  total (109/103)

Only 100 of 219 total aligned reads displayed.

TCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATC  >  NC_000913/3112689‑3112866
                                                                                          |                                                                                       
tCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCaggggg                                                                                       >  1:1035253/1‑93 (MQ=255)
tCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCaggggg                                                                                       >  2:4931360/1‑93 (MQ=255)
  aTCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGca                                                                                     >  1:3366486/1‑93 (MQ=255)
   tctcGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGcac                                                                                    >  2:2570458/1‑93 (MQ=255)
     tcgctcgcCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGcacac                                                                                  >  2:1640784/1‑93 (MQ=255)
       gctcgcCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAg                                                                                >  2:5335568/1‑93 (MQ=255)
        ctcgcCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGc                                                                               >  1:1137978/1‑93 (MQ=255)
           gcCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATc                                                                            <  1:3189953/93‑1 (MQ=255)
           gcCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATc                                                                            <  2:2396499/93‑1 (MQ=255)
           gcCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATc                                                                            <  1:2194323/93‑1 (MQ=255)
             ccccGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAg                                                                          <  1:291701/93‑1 (MQ=255)
             ccccGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAg                                                                          <  1:1762762/93‑1 (MQ=255)
             ccccGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAg                                                                          <  2:596860/93‑1 (MQ=255)
             ccccGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAg                                                                          >  2:6169358/1‑93 (MQ=255)
              cccGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGc                                                                         >  2:3511723/1‑93 (MQ=255)
              cccGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGc                                                                         >  2:5801174/1‑93 (MQ=255)
                cGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCgt                                                                       <  1:720858/93‑1 (MQ=255)
                  gCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCgtgt                                                                     <  2:929204/93‑1 (MQ=255)
                   cAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTc                                                                    <  1:1199057/93‑1 (MQ=255)
                    aGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTcc                                                                   <  1:3559235/93‑1 (MQ=255)
                       tGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCt                                                                <  2:4282640/93‑1 (MQ=255)
                       tGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCt                                                                <  1:3893533/93‑1 (MQ=255)
                         gTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGc                                                              <  2:5095916/93‑1 (MQ=255)
                         gTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGc                                                              >  2:3612747/1‑93 (MQ=255)
                         gTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGc                                                              <  1:3704433/93‑1 (MQ=255)
                          tAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCg                                                             <  2:3996183/93‑1 (MQ=255)
                           aaGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGt                                                            >  2:2084444/1‑93 (MQ=255)
                            aGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGtt                                                           >  1:3051639/1‑93 (MQ=255)
                            aGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGtt                                                           <  1:2636806/93‑1 (MQ=255)
                             gCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTa                                                          <  2:6288963/93‑1 (MQ=255)
                             gCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTa                                                          <  2:3124518/93‑1 (MQ=255)
                               aTTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTAcg                                                        >  1:1027565/1‑92 (MQ=255)
                                ttCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCg                                                       <  2:4810347/93‑1 (MQ=255)
                                ttCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCg                                                       <  1:5318987/93‑1 (MQ=255)
                                  cgcgCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGtt                                                     >  2:5230436/1‑93 (MQ=255)
                                  cgcgCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGtt                                                     <  1:5117444/93‑1 (MQ=255)
                                   gcgcCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTg                                                    <  2:3015671/93‑1 (MQ=255)
                                     gcCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGa                                                  <  1:4704021/93‑1 (MQ=255)
                                      cccGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGAt                                                 >  2:1205917/1‑93 (MQ=255)
                                       ccGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGAtt                                                >  2:6053811/1‑93 (MQ=255)
                                        cGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTc                                               >  1:2858896/1‑93 (MQ=255)
                                        cGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTc                                               <  2:1367968/93‑1 (MQ=255)
                                         ggATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCa                                              >  2:3735835/1‑93 (MQ=255)
                                          gATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAg                                             >  2:5153066/1‑93 (MQ=255)
                                            ttCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGca                                           <  1:199204/93‑1 (MQ=255)
                                             tCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGcac                                          >  1:4851243/1‑93 (MQ=255)
                                             tCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGcac                                          >  2:4379732/1‑93 (MQ=255)
                                              ccATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGcaca                                         >  1:6006462/1‑93 (MQ=255)
                                              ccATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGcaca                                         <  1:961393/93‑1 (MQ=255)
                                               cATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAg                                        >  1:1316529/1‑93 (MQ=255)
                                               cATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAg                                        <  1:5826049/93‑1 (MQ=255)
                                                aTTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGt                                       >  2:591438/1‑93 (MQ=255)
                                                 tttCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACGCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTGAGCACAGTa                                      >  2:3318674/1‑93 (MQ=255)
                                                   tCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAAt                                    <  1:4875980/93‑1 (MQ=255)
                                                    cTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAAtt                                   >  1:4813003/1‑93 (MQ=255)
                                                    cTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAAtt                                   >  1:4277580/1‑93 (MQ=255)
                                                    cTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAAtt                                   <  1:1600462/93‑1 (MQ=255)
                                                    cTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAAtt                                   <  2:5879036/93‑1 (MQ=255)
                                                     ttAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTc                                  >  2:2195588/1‑93 (MQ=255)
                                                      tAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCt                                 <  1:2328728/93‑1 (MQ=255)
                                                       aaaGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCtt                                >  1:3319490/1‑93 (MQ=255)
                                                       aaaGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCtt                                <  2:3781436/93‑1 (MQ=255)
                                                        aaGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTg                               >  2:2699974/1‑93 (MQ=255)
                                                         aGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTgc                              >  1:3977622/1‑93 (MQ=255)
                                                          gAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTgcc                             <  1:1936131/93‑1 (MQ=255)
                                                          gAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTgcc                             >  2:1893401/1‑93 (MQ=255)
                                                          gAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTgcc                             <  1:4949576/93‑1 (MQ=255)
                                                            aCTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTgccgc                           >  1:4679935/1‑93 (MQ=255)
                                                             cTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTgccgcc                          >  1:5579184/1‑93 (MQ=255)
                                                              tCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCTGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCa                         >  2:3633011/1‑93 (MQ=255)
                                                              tCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCa                         >  1:541149/1‑93 (MQ=255)
                                                                cGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCaaa                       >  1:5292776/1‑93 (MQ=255)
                                                                 gAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAGAc                      >  1:6265593/1‑93 (MQ=255)
                                                                 gAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAAc                      >  2:2123961/1‑93 (MQ=255)
                                                                  aaaGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACt                     >  1:3209568/1‑93 (MQ=255)
                                                                   aaGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACtt                    >  1:4483515/1‑93 (MQ=255)
                                                                   aaGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACtt                    >  2:3892822/1‑93 (MQ=255)
                                                                   aaGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACtt                    <  1:2747212/93‑1 (MQ=255)
                                                                    aGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTg                   <  1:264904/93‑1 (MQ=255)
                                                                    aGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTg                   <  2:3434329/93‑1 (MQ=255)
                                                                     gATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGt                  <  1:5719283/93‑1 (MQ=255)
                                                                       tCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCa                >  1:5373876/1‑93 (MQ=255)
                                                                       tCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCa                <  2:2809835/93‑1 (MQ=255)
                                                                        ccGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCAt               <  1:938468/93‑1 (MQ=255)
                                                                         cGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCAtt              >  1:1386607/1‑93 (MQ=255)
                                                                          gTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTg             <  1:3006204/93‑1 (MQ=255)
                                                                           tCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGc            >  2:5544233/1‑93 (MQ=255)
                                                                           tCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGc            >  2:2456234/1‑93 (MQ=255)
                                                                           tCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGc            >  1:844428/1‑93 (MQ=255)
                                                                           tCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGc            <  1:509044/93‑1 (MQ=255)
                                                                             tGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTg          >  2:5699556/1‑93 (MQ=255)
                                                                             tGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTg          >  2:1609176/1‑93 (MQ=255)
                                                                              gggCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGa         >  2:4135933/1‑93 (MQ=255)
                                                                                gCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGAcc       <  2:4496579/93‑1 (MQ=255)
                                                                                  gACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTc     <  2:1769833/93‑1 (MQ=255)
                                                                                  gACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTc     <  2:795070/93‑1 (MQ=255)
                                                                                    cccAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCAt   <  1:1653904/93‑1 (MQ=255)
                                                                                    cccAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCAt   <  2:4570081/93‑1 (MQ=255)
                                                                                    cccAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCAt   <  1:3652616/93‑1 (MQ=255)
                                                                                     ccAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATc  <  1:2383388/93‑1 (MQ=255)
                                                                                          |                                                                                       
TCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATC  >  NC_000913/3112689‑3112866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCTCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATCGCCG  >  NC_000913/3112686‑3112870
                                                                                             |                                                                                           
AGCTCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGG                                                                                             >  SRR4302533.1400805/1‑94 (MQ=60)
AGCTCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGG                                                                                             <  SRR4302533.5470291/94‑1 (MQ=60)
 GCTCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGG                                                                                            >  SRR4302533.3699733/1‑94 (MQ=60)
 GCTCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGG                                                                                            >  SRR4302533.5655823/1‑94 (MQ=60)
  CTCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGG                                                                                           >  SRR4302533.1041341/1‑94 (MQ=60)
   TCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGC                                                                                          <  SRR4302533.949608/94‑1 (MQ=60)
    CATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCA                                                                                         >  SRR4302533.2319058/1‑94 (MQ=60)
    CATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCA                                                                                         >  SRR4302533.3387281/1‑94 (MQ=60)
          GCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGC                                                                                   >  SRR4302533.2961993/1‑94 (MQ=60)
          GCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGC                                                                                   >  SRR4302533.1144748/1‑94 (MQ=60)
            TCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCAT                                                                                 >  SRR4302533.343349/1‑94 (MQ=60)
              GCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCA                                                                               <  SRR4302533.2207846/94‑1 (MQ=60)
              GCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCA                                                                               <  SRR4302533.3209575/94‑1 (MQ=60)
                CCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGC                                                                             <  SRR4302533.293481/94‑1 (MQ=60)
                CCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGC                                                                             <  SRR4302533.1773500/94‑1 (MQ=60)
                 CCCGGCAGCTGGTAAGCATTCGCGACCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCG                                                                            <  SRR4302533.87630/94‑1 (MQ=60)
                   CGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTG                                                                          <  SRR4302533.725110/94‑1 (MQ=60)
                    GGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGT                                                                         <  SRR4302533.5399572/94‑1 (MQ=60)
                      CAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCC                                                                       <  SRR4302533.1206260/94‑1 (MQ=60)
                       AGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCG                                                                      <  SRR4302533.3581167/94‑1 (MQ=60)
                          TGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTG                                                                   >  SRR4302533.5018642/1‑94 (MQ=60)
                          TGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTG                                                                   <  SRR4302533.3917293/94‑1 (MQ=60)
                          TGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTG                                                                   >  SRR4302533.154706/1‑94 (MQ=60)
                            GTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCG                                                                 <  SRR4302533.3727186/94‑1 (MQ=60)
                            GTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCG                                                                 >  SRR4302533.266920/1‑94 (MQ=60)
                            GTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCG                                                                 <  SRR4302533.2813203/94‑1 (MQ=60)
                              AAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTT                                                               >  SRR4302533.3070328/1‑94 (MQ=60)
                               AGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTA                                                              <  SRR4302533.2653014/94‑1 (MQ=60)
                                GCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTAC                                                             >  SRR4302533.5240236/1‑94 (MQ=60)
                                 CATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACG                                                            >  SRR4302533.1033600/1‑94 (MQ=60)
                                 CATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACC                                                            <  SRR4302533.337621/94‑1 (MQ=60)
                                   TTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGT                                                          <  SRR4302533.5350864/94‑1 (MQ=60)
                                     CGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTG                                                        <  SRR4302533.5148368/94‑1 (MQ=60)
                                     CGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTG                                                        <  SRR4302533.5663032/94‑1 (MQ=60)
                                        GCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGAT                                                     <  SRR4302533.370408/94‑1 (MQ=60)
                                        GCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGAT                                                     <  SRR4302533.3212844/94‑1 (MQ=60)
                                        GCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGAT                                                     <  SRR4302533.4732535/94‑1 (MQ=60)
                                         CCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGCGCACACAGCATCAGTGCGGCGGCTGCGATACTGTTGGATT                                                    >  SRR4302533.750745/1‑94 (MQ=60)
                                          CCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTC                                                   <  SRR4302533.4857345/94‑1 (MQ=60)
                                          CCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTC                                                   >  SRR4302533.2876485/1‑94 (MQ=60)
                                           CGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCA                                                  >  SRR4302533.3690058/1‑94 (MQ=60)
                                           CGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCA                                                  <  SRR4302533.1040973/94‑1 (MQ=60)
                                            GGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAG                                                 <  SRR4302533.3642672/94‑1 (MQ=60)
                                            GGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAG                                                 >  SRR4302533.5798090/1‑94 (MQ=60)
                                            GGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATAAGCGTGTCCGCTGCGTTACCGTTGGATTCAG                                                 >  SRR4302533.3763372/1‑94 (MQ=60)
                                             GATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGC                                                >  SRR4302533.1146476/1‑94 (MQ=60)
                                               TTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCAC                                              >  SRR4302533.4880642/1‑94 (MQ=60)
                                               TTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCAC                                              <  SRR4302533.200465/94‑1 (MQ=60)
                                               TTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCAC                                              >  SRR4302533.132678/1‑94 (MQ=60)
                                               TTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCAC                                              <  SRR4302533.73991/94‑1 (MQ=60)
                                               TTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCAC                                              >  SRR4302533.6312590/1‑94 (MQ=60)
                                                TCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACA                                             >  SRR4302533.60140/1‑94 (MQ=60)
                                                TCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACA                                             >  SRR4302533.6042854/1‑94 (MQ=60)
                                                TCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACA                                             >  SRR4302533.4179972/1‑94 (MQ=60)
                                                 CCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAG                                            >  SRR4302533.1324426/1‑94 (MQ=60)
                                                 CCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAG                                            >  SRR4302533.4725594/1‑94 (MQ=60)
                                                 CCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAG                                            <  SRR4302533.967040/94‑1 (MQ=60)
                                                 CCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAG                                            <  SRR4302533.170779/94‑1 (MQ=60)
                                                  CATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGT                                           <  SRR4302533.5861252/94‑1 (MQ=60)
                                                  CATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGT                                           >  SRR4302533.99697/1‑94 (MQ=60)
                                                   ATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTA                                          >  SRR4302533.2166966/1‑94 (MQ=60)
                                                     TTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAAT                                        >  SRR4302533.4923375/1‑94 (MQ=60)
                                                      TCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATT                                       <  SRR4302533.4905522/94‑1 (MQ=60)
                                                      TCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATT                                       >  SRR4302533.4842171/1‑94 (MQ=60)
                                                      TCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATT                                       >  SRR4302533.4821913/1‑94 (MQ=60)
                                                      TCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATT                                       >  SRR4302533.4303304/1‑94 (MQ=60)
                                                       CTTAAAGACCTCCGAAAGAGCCGTCTGCGCCACCCAGGGGGCACACAGCATCAGCGTGTCCTCTGCGTTACCGTTGGATTCAGCACAGTAATTC                                      <  SRR4302533.4674044/94‑1 (MQ=60)
                                                       CTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTC                                      <  SRR4302533.1610150/94‑1 (MQ=60)
                                                       CTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTC                                      >  SRR4302533.4914924/1‑94 (MQ=60)
                                                        TTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCT                                     >  SRR4302533.1045606/1‑94 (MQ=60)
                                                        TTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCT                                     <  SRR4302533.5412694/94‑1 (MQ=60)
                                                         TAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTT                                    <  SRR4302533.2343147/94‑1 (MQ=60)
                                                         TAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTT                                    >  SRR4302533.3339994/1‑94 (MQ=60)
                                                          AAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGTATTCAGCACAGTAATTCTTG                                   <  SRR4302533.3024703/94‑1 (MQ=60)
                                                          AAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTG                                   >  SRR4302533.398853/1‑94 (MQ=60)
                                                           AAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGC                                  <  SRR4302533.3226067/94‑1 (MQ=60)
                                                           AAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGC                                  <  SRR4302533.6098855/94‑1 (MQ=60)
                                                           AAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGC                                  <  SRR4302533.329618/94‑1 (MQ=60)
                                                           AAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGC                                  >  SRR4302533.4001839/1‑94 (MQ=60)
                                                             GAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCG                                <  SRR4302533.1947940/94‑1 (MQ=60)
                                                             GAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCG                                >  SRR4302533.2665795/1‑94 (MQ=60)
                                                             GAACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCG                                <  SRR4302533.4979553/94‑1 (MQ=60)
                                                              AACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGC                               >  SRR4302533.4708297/1‑94 (MQ=60)
                                                               ACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCC                              >  SRR4302533.5429933/1‑94 (MQ=60)
                                                               ACTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCC                              >  SRR4302533.5612901/1‑94 (MQ=60)
                                                                CTCCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCA                             >  SRR4302533.544369/1‑94 (MQ=60)
                                                                  CCGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAA                           >  SRR4302533.5324461/1‑94 (MQ=60)
                                                                   CGAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAGAC                          >  SRR4302533.6303036/1‑94 (MQ=60)
                                                                    GAAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACT                         >  SRR4302533.3229335/1‑94 (MQ=60)
                                                                     AAAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTT                        >  SRR4302533.4510665/1‑94 (MQ=60)
                                                                      AAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTG                       <  SRR4302533.2764054/94‑1 (MQ=60)
                                                                      AAGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTG                       <  SRR4302533.2192147/94‑1 (MQ=60)
                                                                       AGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGT                      <  SRR4302533.266515/94‑1 (MQ=60)
                                                                       AGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGT                      >  SRR4302533.5566212/1‑94 (MQ=60)
                                                                       AGATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGT                      >  SRR4302533.1799642/1‑94 (MQ=60)
                                                                        GATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTC                     <  SRR4302533.1614852/94‑1 (MQ=60)
                                                                        GATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTC                     <  SRR4302533.5753818/94‑1 (MQ=60)
                                                                         ATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCA                    >  SRR4302533.5132653/1‑94 (MQ=60)
                                                                         ATCCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCA                    >  SRR4302533.5406168/1‑94 (MQ=60)
                                                                           CCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATT                  <  SRR4302533.943981/94‑1 (MQ=60)
                                                                           CCGTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATT                  >  SRR4302533.1394950/1‑94 (MQ=60)
                                                                             GTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGC                <  SRR4302533.3024592/94‑1 (MQ=60)
                                                                             GTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGC                >  SRR4302533.849364/1‑94 (MQ=60)
                                                                             GTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGC                >  SRR4302533.4901354/1‑94 (MQ=60)
                                                                             GTCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGC                >  SRR4302533.622559/1‑94 (MQ=60)
                                                                              TCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCT               <  SRR4302533.2922292/94‑1 (MQ=60)
                                                                              TCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCT               <  SRR4302533.512066/94‑1 (MQ=60)
                                                                              TCTGGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCT               <  SRR4302533.4328748/94‑1 (MQ=60)
                                                                                 GGGCGACCCAGGGTGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGAC            <  SRR4302533.3176885/94‑1 (MQ=60)
                                                                                 GGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGAC            <  SRR4302533.1209038/94‑1 (MQ=60)
                                                                                 GGGCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGAC            <  SRR4302533.2656531/94‑1 (MQ=60)
                                                                                   GCGACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCT          <  SRR4302533.2602010/94‑1 (MQ=60)
                                                                                     GACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCA        >  SRR4302533.46524/1‑94 (MQ=60)
                                                                                     GACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCA        >  SRR4302533.5342906/1‑94 (MQ=60)
                                                                                      ACCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCAT       <  SRR4302533.1989940/94‑1 (MQ=60)
                                                                                       CCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATC      <  SRR4302533.2393345/94‑1 (MQ=60)
                                                                                       CCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATC      <  SRR4302533.1663919/94‑1 (MQ=60)
                                                                                       CCCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATC      <  SRR4302533.3675075/94‑1 (MQ=60)
                                                                                        CCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATCG     <  SRR4302533.2398121/94‑1 (MQ=60)
                                                                                        CCAGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATCG     <  SRR4302533.1589114/94‑1 (MQ=60)
                                                                                          AGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCGGCCAAACTTGTCATTGCTGACCTCATCGCC   >  SRR4302533.1199357/1‑94 (MQ=60)
                                                                                          AGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATCGCC   >  SRR4302533.1742793/1‑94 (MQ=60)
                                                                                          AGGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATCGCC   >  SRR4302533.1480201/1‑94 (MQ=60)
                                                                                           GGGGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATCGCCG  <  SRR4302533.3562227/94‑1 (MQ=60)
                                                                                             |                                                                                           
AGCTCATCTCGCTCGCCCCCGGCAGCTGGTAAGCATTCGCGCCCGGATTCCATTTCTTAAAGAACTCCGAAAGATCCGTCTGGGCGACCCAGGAGGCACACAGCATCAGCGTGTCCGCTGCGTTACCGTTGGATTCAGCACAGTAATTCTTGCCGCCAAACTTGTCATTGCTGACCTCATCGCCG  >  NC_000913/3112686‑3112870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑