Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,127,469 |
G→A |
G254G (GGC→GGT) |
b2981 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,127,469 | 0 | G | A | 98.7%
| 831.0
/ NA
| 233 | G254G (GGC→GGT) | b2981 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (121/109); minor base C (0/3); total (121/112) |
| Fisher's exact test for biased strand distribution p-value = 1.10e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 235 total aligned reads displayed.
GTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCAT > NC_000913/3127379‑3127558
|
gTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCAcc < 2:4043060/93‑1 (MQ=255)
tCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCa > 2:1496498/1‑93 (MQ=255)
tCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCa < 1:1378387/93‑1 (MQ=255)
cGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCCCCCAt < 2:4840368/93‑1 (MQ=255)
cGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCAt < 2:2549091/93‑1 (MQ=255)
ggCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATg < 1:3562990/93‑1 (MQ=255)
ggCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATg < 2:184503/93‑1 (MQ=255)
gCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATgg < 1:4174149/93‑1 (MQ=255)
cAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGt > 2:3473088/1‑93 (MQ=255)
aGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCATATATTTAAGTTGATCACCCATGGTcg > 2:5093446/1‑93 (MQ=255)
accGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTcgc < 2:1996560/92‑1 (MQ=255)
gACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGaa > 1:5224326/1‑93 (MQ=255)
gACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGaa > 1:5653272/1‑93 (MQ=255)
gACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGaa > 2:531159/1‑93 (MQ=255)
gACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGaa > 1:3023983/1‑93 (MQ=255)
aCAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAAt > 1:4547847/1‑93 (MQ=255)
aCAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAAt < 1:326609/93‑1 (MQ=255)
aCAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAAt < 2:1221372/93‑1 (MQ=255)
cAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAAtt > 2:396324/1‑93 (MQ=255)
aTAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCa < 2:687175/93‑1 (MQ=255)
aTAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCa < 1:2218321/93‑1 (MQ=255)
aaaCGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATg < 1:1106006/93‑1 (MQ=255)
aaCGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGt > 2:2827514/1‑93 (MQ=255)
aCGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGtt < 1:1331918/93‑1 (MQ=255)
cgcgCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTc < 1:59659/93‑1 (MQ=255)
gcgcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCg < 1:853049/93‑1 (MQ=255)
cgcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCCCCCATGGTCGCGAATTCATGTTCgg < 2:1434306/93‑1 (MQ=255)
cgcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCgg > 2:4926231/1‑93 (MQ=255)
cgcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCgg < 1:6263767/93‑1 (MQ=255)
cgcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCgg > 1:5417018/1‑93 (MQ=255)
gcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGt > 1:2824017/1‑93 (MQ=255)
gcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGt > 2:2738819/1‑93 (MQ=255)
gcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGt < 1:2340178/93‑1 (MQ=255)
gcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGt < 2:5503992/93‑1 (MQ=255)
gcAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGt > 1:3848740/1‑93 (MQ=255)
aGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTaa > 1:1636358/1‑93 (MQ=255)
ggTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAAc < 1:2587245/93‑1 (MQ=255)
gTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACg < 1:2918011/93‑1 (MQ=255)
gCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGc < 2:5837961/93‑1 (MQ=255)
gCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGc > 2:5577774/1‑93 (MQ=255)
gCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGc < 2:6177473/93‑1 (MQ=255)
aGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGcac > 2:1766134/1‑93 (MQ=255)
aGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGcac < 2:501054/93‑1 (MQ=255)
aGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGcac > 2:4254392/1‑93 (MQ=255)
gAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGcaca > 2:2776158/1‑93 (MQ=255)
gAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGcaca > 2:3338550/1‑93 (MQ=255)
gAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGcaca > 1:5011223/1‑93 (MQ=255)
aatcaatcTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACaa > 1:4835720/1‑93 (MQ=255)
atcaatcTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACaaa < 1:639620/93‑1 (MQ=255)
atcaatcTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACaaa > 2:1396052/1‑93 (MQ=255)
tcaatcTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAAt > 1:2646580/1‑93 (MQ=255)
aatcTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATcc > 2:4220067/1‑93 (MQ=255)
atcTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATccc > 2:4723881/1‑93 (MQ=255)
tctcAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATcccc > 2:2454750/1‑93 (MQ=255)
tcAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAg > 1:4461832/1‑93 (MQ=255)
cAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGt < 1:3953459/93‑1 (MQ=255)
ataGATCATATCGTGCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGtgctg > 1:4399478/1‑93 (MQ=255)
ataGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGtgctg > 1:1007238/1‑93 (MQ=255)
ataGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATACCCAGTTGtgctg > 2:3810326/1‑93 (MQ=255)
taGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGtgctgc > 1:253193/1‑93 (MQ=255)
gATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgcca > 1:3114559/1‑93 (MQ=255)
tCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccagc > 1:1731881/1‑93 (MQ=255)
tCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccagc > 2:5130674/1‑93 (MQ=255)
tCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccagc > 2:2573299/1‑93 (MQ=255)
cATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccagcc > 1:918084/1‑93 (MQ=255)
cATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccagcc < 1:3657906/93‑1 (MQ=255)
cATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccagcc > 1:4716200/1‑93 (MQ=255)
cATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTgccagcc > 2:2154348/1‑93 (MQ=255)
tatCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGccagccag > 2:3549747/1‑93 (MQ=255)
atCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCaga > 2:4712451/1‑93 (MQ=255)
atCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCaga < 1:74283/93‑1 (MQ=255)
atCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCaga > 2:3023054/1‑93 (MQ=255)
cGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGt < 1:1147777/93‑1 (MQ=255)
gTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGtt > 2:2257070/1‑93 (MQ=255)
tCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg < 2:896669/93‑1 (MQ=255)
tCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg > 2:1154625/1‑93 (MQ=255)
tCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg < 1:5149159/93‑1 (MQ=255)
tCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTg < 2:1672510/93‑1 (MQ=255)
cGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGaa < 2:2402322/93‑1 (MQ=255)
gCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGaaaa > 2:5984147/1‑93 (MQ=255)
gCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGaaaa < 2:5951683/93‑1 (MQ=255)
cACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAt < 2:2725105/93‑1 (MQ=255)
aCCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtc > 2:3740842/1‑93 (MQ=255)
aCCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtc < 1:3827248/93‑1 (MQ=255)
ccAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtct > 2:761522/1‑93 (MQ=255)
ccAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAACCAGAGTTGAAAAtct > 2:4633261/1‑93 (MQ=255)
cAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtctc > 2:4389370/1‑93 (MQ=255)
cAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtctc < 2:2654663/93‑1 (MQ=255)
cAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAtctc > 1:1539717/1‑93 (MQ=255)
aGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCa < 1:3519574/93‑1 (MQ=255)
aGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCa < 1:4580463/93‑1 (MQ=255)
gATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCAc < 2:399850/93‑1 (MQ=255)
gATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCAc < 1:5269263/93‑1 (MQ=255)
gATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCAc < 1:1308613/93‑1 (MQ=255)
gATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCAc > 2:4446754/1‑93 (MQ=255)
atTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCa < 1:2011865/93‑1 (MQ=255)
ttAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAgg > 1:5830450/1‑93 (MQ=255)
aaGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGAt < 2:5637404/93‑1 (MQ=255)
tGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGc < 2:796247/93‑1 (MQ=255)
aTCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCAt > 1:4171078/1‑93 (MQ=255)
|
GTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCAT > NC_000913/3127379‑3127558
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCT > NC_000913/3127376‑3127562
|
TATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCA < SRR4302533.1930669/94‑1 (MQ=60)
GATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCA > SRR4302533.285849/1‑94 (MQ=60)
TGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACC > SRR4302533.2670969/1‑94 (MQ=60)
TTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCC < SRR4302533.1672407/94‑1 (MQ=60)
TCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCAT < SRR4302533.1386680/94‑1 (MQ=60)
CGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATG > SRR4302533.3096914/1‑94 (MQ=60)
GGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGG < SRR4302533.3584943/94‑1 (MQ=60)
GCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGT < SRR4302533.4199443/94‑1 (MQ=60)
GCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCG < SRR4302533.2903781/94‑1 (MQ=60)
CGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAA > SRR4302533.3042483/1‑94 (MQ=60)
CGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAA > SRR4302533.5255755/1‑94 (MQ=60)
CGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAA > SRR4302533.5687443/1‑94 (MQ=60)
GACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAAT > SRR4302533.4575390/1‑94 (MQ=60)
GACAATAAACGCCCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAAT > SRR4302533.5145249/1‑94 (MQ=60)
ACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATT < SRR4302533.328597/94‑1 (MQ=60)
AATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCA < SRR4302533.2290758/94‑1 (MQ=60)
ATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCAT < SRR4302533.3738005/94‑1 (MQ=60)
ATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCAT > SRR4302533.1051179/1‑94 (MQ=60)
ATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCAT < SRR4302533.2232016/94‑1 (MQ=60)
ATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCAT < SRR4302533.74687/94‑1 (MQ=60)
AAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGT > SRR4302533.4957898/1‑94 (MQ=60)
AAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGT < SRR4302533.6303312/94‑1 (MQ=60)
AAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGT < SRR4302533.1112564/94‑1 (MQ=60)
AAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGT > SRR4302533.4058223/1‑94 (MQ=60)
AACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTT < SRR4302533.3859098/94‑1 (MQ=60)
AACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTT < SRR4302533.1175342/94‑1 (MQ=60)
ACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTC < SRR4302533.1339909/94‑1 (MQ=60)
CGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCG > SRR4302533.577340/1‑94 (MQ=60)
CGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCG < SRR4302533.60049/94‑1 (MQ=60)
CGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCG > SRR4302533.902069/1‑94 (MQ=60)
CGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCG > SRR4302533.2553509/1‑94 (MQ=60)
CGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCG > SRR4302533.536711/1‑94 (MQ=60)
GCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGG < SRR4302533.858043/94‑1 (MQ=60)
GCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGG > SRR4302533.5449603/1‑94 (MQ=60)
CGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGT > SRR4302533.2841395/1‑94 (MQ=60)
CGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGT > SRR4302533.3872242/1‑94 (MQ=60)
CGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGT < SRR4302533.6301206/94‑1 (MQ=60)
GCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTA < SRR4302533.2354669/94‑1 (MQ=60)
GCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTA < SRR4302533.4438684/94‑1 (MQ=60)
CAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAA > SRR4302533.4199145/1‑94 (MQ=60)
CAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAA > SRR4302533.1646266/1‑94 (MQ=60)
GGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAAC < SRR4302533.1519066/94‑1 (MQ=60)
GGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACG < SRR4302533.6309526/94‑1 (MQ=60)
GGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACG < SRR4302533.2603151/94‑1 (MQ=60)
GTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGG < SRR4302533.2935896/94‑1 (MQ=60)
CAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCAC < SRR4302533.5327279/94‑1 (MQ=60)
CAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCAC > SRR4302533.1629384/1‑94 (MQ=60)
CAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCAC > SRR4302533.4852292/1‑94 (MQ=60)
AGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACA > SRR4302533.5041586/1‑94 (MQ=60)
GAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAA > SRR4302533.4865032/1‑94 (MQ=60)
ATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAAT > SRR4302533.2662841/1‑94 (MQ=60)
ATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAAT < SRR4302533.643384/94‑1 (MQ=60)
AATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCC > SRR4302533.136955/1‑94 (MQ=60)
ATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCC > SRR4302533.4553032/1‑94 (MQ=60)
TCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCA < SRR4302533.5259717/94‑1 (MQ=60)
CTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAG > SRR4302533.4488818/1‑94 (MQ=60)
TCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGT < SRR4302533.4315386/94‑1 (MQ=60)
CAGCTATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTT < SRR4302533.904105/94‑1 (MQ=60)
CAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTT < SRR4302533.3977564/94‑1 (MQ=60)
GATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGC > SRR4302533.6132576/1‑94 (MQ=60)
GATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGC > SRR4302533.5537466/1‑94 (MQ=60)
TATAGATCATATCGTGCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTG > SRR4302533.4426040/1‑94 (MQ=60)
TATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTG > SRR4302533.1013130/1‑94 (MQ=60)
ATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGC > SRR4302533.254747/1‑94 (MQ=60)
TAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCC > SRR4302533.971282/1‑94 (MQ=60)
AGATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCA > SRR4302533.3133711/1‑94 (MQ=60)
ATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGC > SRR4302533.2771108/1‑94 (MQ=60)
ATCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGC > SRR4302533.1742382/1‑94 (MQ=60)
TCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCC < SRR4302533.4689592/94‑1 (MQ=60)
TCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCC > SRR4302533.4744792/1‑94 (MQ=60)
TCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCC > SRR4302533.1528579/1‑94 (MQ=60)
TCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCC > SRR4302533.923478/1‑94 (MQ=60)
TCATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCC < SRR4302533.2625567/94‑1 (MQ=60)
CATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCA < SRR4302533.3680398/94‑1 (MQ=60)
CATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCA > SRR4302533.1833060/1‑94 (MQ=60)
ATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAG > SRR4302533.1320194/1‑94 (MQ=60)
ATATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAG < SRR4302533.2987345/94‑1 (MQ=60)
TATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGA < SRR4302533.1959433/94‑1 (MQ=60)
TATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGA > SRR4302533.4603848/1‑94 (MQ=60)
TATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGCGCTGCCAGCCAGA < SRR4302533.3425715/94‑1 (MQ=60)
ATCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAG < SRR4302533.74764/94‑1 (MQ=60)
TCGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGT < SRR4302533.3355923/94‑1 (MQ=60)
CGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTT < SRR4302533.1154628/94‑1 (MQ=60)
CGTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTT < SRR4302533.5232617/94‑1 (MQ=60)
GTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTG > SRR4302533.5146277/1‑94 (MQ=60)
GTCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTG < SRR4302533.3587477/94‑1 (MQ=60)
TCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGA < SRR4302533.5180269/94‑1 (MQ=60)
TCCGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGA < SRR4302533.1135205/94‑1 (MQ=60)
CGGCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGGTGAAA > SRR4302533.2355333/1‑94 (MQ=60)
GCACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAAT < SRR4302533.4656178/94‑1 (MQ=60)
CACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATC > SRR4302533.4483790/1‑94 (MQ=60)
CACCAGATATTTAAGTTGATCACCCATGGTCGCCAATTCATGTTCGGTAAACGGCACAAATCCCCAGCTGTGCTGCCAGTCAGAGTTGAAAATC > SRR4302533.596266/1‑94 (MQ=60)
ctCAGATATTTACGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCT < SRR4302533.5824050/92‑1 (MQ=60)
ACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCT > SRR4302533.789523/1‑94 (MQ=60)
ACCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCT < SRR4302533.3850646/94‑1 (MQ=60)
CCAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTC > SRR4302533.1548989/1‑94 (MQ=60)
CAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCA < SRR4302533.3205244/94‑1 (MQ=60)
CAGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCA > SRR4302533.3944825/1‑94 (MQ=60)
AGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCAC < SRR4302533.4608220/94‑1 (MQ=60)
AGATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCAC < SRR4302533.3541272/94‑1 (MQ=60)
GATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACG < SRR4302533.5300869/94‑1 (MQ=60)
GATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACG < SRR4302533.1316469/94‑1 (MQ=60)
ATATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGC > SRR4302533.3120919/1‑94 (MQ=60)
TATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCA > SRR4302533.4079944/1‑94 (MQ=60)
ATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAG < SRR4302533.2418583/94‑1 (MQ=60)
ATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAG < SRR4302533.2024258/94‑1 (MQ=60)
ATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAG > SRR4302533.1292213/1‑94 (MQ=60)
ATTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAG < SRR4302533.3820595/94‑1 (MQ=60)
TTTAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGG > SRR4302533.5865683/1‑94 (MQ=60)
TAAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGAT < SRR4302533.3545354/94‑1 (MQ=60)
AAGTTGATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATC < SRR4302533.2230128/94‑1 (MQ=60)
GATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCAT > SRR4302533.4196350/1‑94 (MQ=60)
ATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATC > SRR4302533.4723084/1‑94 (MQ=60)
ATCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATC > SRR4302533.2910882/1‑94 (MQ=60)
TCACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCT > SRR4302533.178628/1‑94 (MQ=60)
CACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTC < SRR4302533.5252620/94‑1 (MQ=60)
CACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTC > SRR4302533.3838903/1‑94 (MQ=60)
CACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTC > SRR4302533.2550888/1‑94 (MQ=60)
CACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTC > SRR4302533.1734679/1‑94 (MQ=60)
ACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCT < SRR4302533.1411279/94‑1 (MQ=60)
ACCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCT > SRR4302533.2375506/1‑94 (MQ=60)
|
GATGTTCGGCAAGCCGACAATAAACGCGCAGGGTGCAGAATCAATCTCAGCGATATAGATCATATCGTCCGGCACCAGATATTTAAGTTGATCGCCCATGGTCGCGAATTCATGTTCGGTAAACGGCACAAATCCCCAGTTGTGCTGCCAGCCAGAGTTGAAAATCTCACGCAGGATCTGCATCTCT > NC_000913/3127376‑3127562
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
