Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,359,299	T→C	G163G (GGT→GGC)	gltF →	GltF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,359,299	0	T	C	100.0%	789.2 / NA	246	G163G (GGT→GGC)	gltF	GltF
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (124/122); total (124/122)

Only 100 of 250 total aligned reads displayed.

AGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCT  >  NC_000913/3359209‑3359388

 ggTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGaa                                                                                        >  1:3156589/1‑93 (MQ=255)

 ggTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGaa                                                                                        >  1:451824/1‑93 (MQ=255)

 ggTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGaa                                                                                        >  2:1991922/1‑93 (MQ=255)

 ggTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGaa                                                                                        <  1:4989313/93‑1 (MQ=255)

  gTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACTGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGaaa                                                                                       <  1:4440860/93‑1 (MQ=255)

  gTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGaaa                                                                                       >  1:1963637/1‑93 (MQ=255)

  gTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGaaa                                                                                       <  1:1058363/93‑1 (MQ=255)

    tCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAAtt                                                                                     >  2:5993885/1‑93 (MQ=255)

      tGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTcc                                                                                   <  2:5506367/93‑1 (MQ=255)

      tGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTcc                                                                                   >  2:3807711/1‑93 (MQ=255)

       gcgcCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCt                                                                                  >  1:5949042/1‑93 (MQ=255)

        cgcCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTg                                                                                 <  2:2837320/93‑1 (MQ=255)

         gcCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGt                                                                                >  1:5291372/1‑93 (MQ=255)

          ccTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTc                                                                               <  1:2035260/93‑1 (MQ=255)

          ccTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTc                                                                               >  2:2670912/1‑93 (MQ=255)

           cTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCg                                                                              <  2:2551865/93‑1 (MQ=255)

           cTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCg                                                                              >  1:4899179/1‑93 (MQ=255)

           cTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCg                                                                              >  2:4379976/1‑93 (MQ=255)

           cTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCg                                                                              >  2:5129345/1‑93 (MQ=255)

             aaTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAc                                                                            >  2:3178018/1‑93 (MQ=255)

             aaTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAc                                                                            >  2:5495033/1‑93 (MQ=255)

             aaTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAc                                                                            <  1:743697/93‑1 (MQ=255)

              aTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAcc                                                                           <  1:5235990/93‑1 (MQ=255)

              aTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAcc                                                                           >  2:3010861/1‑93 (MQ=255)

              aTGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAcc                                                                           >  2:459253/1‑93 (MQ=255)

               tGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCt                                                                          <  1:2605469/93‑1 (MQ=255)

               tGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCt                                                                          >  1:2130641/1‑93 (MQ=255)

                 gACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGa                                                                        >  2:1040625/1‑93 (MQ=255)

                 gACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGa                                                                        <  2:4916681/93‑1 (MQ=255)

                  aCAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGAt                                                                       >  1:6180216/1‑93 (MQ=255)

                    aaaaaaTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTc                                                                     >  1:2554950/1‑93 (MQ=255)

                     aaaaaTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCa                                                                    <  1:4678181/93‑1 (MQ=255)

                       aaaTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCaaa                                                                  >  1:3283696/1‑93 (MQ=255)

                       aaaTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCaaa                                                                  <  2:3215236/93‑1 (MQ=255)

                         aTTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACt                                                                >  1:3355217/1‑93 (MQ=255)

                           tGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTgc                                                              >  2:2387405/1‑92 (MQ=255)

                           tGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGa                                                              <  2:1963637/93‑1 (MQ=255)

                            ggCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGAc                                                             <  2:1433001/93‑1 (MQ=255)

                            ggCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGAc                                                             <  2:2163048/93‑1 (MQ=255)

                               gcTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGATCTGATTCAAACTGACCAc                                                          >  1:1345308/1‑93 (MQ=255)

                               gcTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCAc                                                          >  2:4166434/1‑93 (MQ=255)

                                cTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACt                                                         >  2:4928337/1‑93 (MQ=255)

                                 tGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTg                                                        <  1:1601215/93‑1 (MQ=255)

                                  gCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAAATGACCACTgg                                                       >  1:5080364/1‑93 (MQ=255)

                                   cATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGt                                                      <  2:5298615/93‑1 (MQ=255)

                                    aTCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTc                                                     >  2:1615378/1‑93 (MQ=255)

                                    aTCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTc                                                     >  1:4948669/1‑93 (MQ=255)

                                    aTCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTc                                                     <  2:3535627/93‑1 (MQ=255)

                                    aTCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTc                                                     >  1:141173/1‑93 (MQ=255)

                                     tCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTca                                                    <  2:3707947/93‑1 (MQ=255)

                                       cATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTcagc                                                  <  1:3464207/93‑1 (MQ=255)

                                        aTTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTcagca                                                 >  1:4866922/1‑93 (MQ=255)

                                        aTTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTcagca                                                 <  2:4444824/93‑1 (MQ=255)

                                        aTTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTcagca                                                 <  2:5341229/93‑1 (MQ=255)

                                         ttGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTcagcag                                                <  2:5728648/93‑1 (MQ=255)

                                           ggTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCg                                              <  1:987124/93‑1 (MQ=255)

                                            gTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGa                                             <  2:4763982/93‑1 (MQ=255)

                                             tATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGAc                                            >  1:5856054/1‑93 (MQ=255)

                                             tATTGACAGGTCTAAGGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACGTGATTCAAACTGACCACTGGTCAGCAGCggc                                            <  2:4669013/93‑3 (MQ=255)

                                              aTTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGAcc                                           >  1:2007586/1‑93 (MQ=255)

                                              aTTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGAcc                                           >  1:1713455/1‑93 (MQ=255)

                                              aTTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGAcc                                           <  1:1316284/93‑1 (MQ=255)

                                              aTTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGAcc                                           >  2:3361455/1‑93 (MQ=255)

                                                    aGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCcaca                                     >  2:5539771/1‑93 (MQ=255)

                                                    aGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCcaca                                     <  1:5012038/93‑1 (MQ=255)

                                                    aGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCcaca                                     >  1:5538101/1‑93 (MQ=255)

                                                     ggTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACAt                                    <  1:1761423/93‑1 (MQ=255)

                                                        cTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGa                                 <  1:2436363/93‑1 (MQ=255)

                                                        cTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGa                                 <  1:3252991/93‑1 (MQ=255)

                                                          aaTGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGaaa                               <  2:5302905/93‑1 (MQ=255)

                                                            tggtggGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGc                             >  1:5738814/1‑93 (MQ=255)

                                                              gtgtGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCt                           <  1:1178849/93‑1 (MQ=255)

                                                               tggGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTc                          <  1:2620127/93‑1 (MQ=255)

                                                                gggATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCa                         <  1:6040966/93‑1 (MQ=255)

                                                                 ggATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCAt                        >  1:2180487/1‑93 (MQ=255)

                                                                 ggATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGACTCac                        >  2:6094125/1‑92 (MQ=255)

                                                                  gATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATc                       <  2:2984355/93‑1 (MQ=255)

                                                                   aTTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCt                      <  2:70642/93‑1 (MQ=255)

                                                                    ttCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTa                     >  1:1008668/1‑93 (MQ=255)

                                                                    ttCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTa                     >  1:4352374/1‑93 (MQ=255)

                                                                      cACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAAt                   <  1:3673548/93‑1 (MQ=255)

                                                                      cACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAAt                   <  2:4058873/93‑1 (MQ=255)

                                                                      cACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAAt                   <  1:3240679/93‑1 (MQ=255)

                                                                      cACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAAt                   >  2:4835326/1‑93 (MQ=255)

                                                                        cgcgGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATgg                 >  2:1138328/1‑93 (MQ=255)

                                                                         gcggcgGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGgc                <  2:1327224/93‑1 (MQ=255)

                                                                           ggcggACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGgcgc              <  2:3845107/93‑1 (MQ=255)

                                                                           cgcggACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGgcgc              <  1:2866801/92‑1 (MQ=255)

                                                                              ggACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCAtt           >  1:4037924/1‑93 (MQ=255)

                                                                              ggACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCAtt           >  2:1707196/1‑93 (MQ=255)

                                                                               gACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTc          >  2:78401/1‑93 (MQ=255)

                                                                               gACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTc          <  1:3424139/93‑1 (MQ=255)

                                                                               gACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTc          <  1:4245967/93‑1 (MQ=255)

                                                                               gACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTc          <  2:3615636/93‑1 (MQ=255)

                                                                               gACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTc          >  2:3154247/1‑93 (MQ=255)

                                                                                aCGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCt         <  2:5208627/93‑1 (MQ=255)

                                                                                    tACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCGTCATCTAATGGCGCATTCTGCTc     >  2:5535619/1‑93 (MQ=255)

                                                                                    tACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTc     <  1:5371213/93‑1 (MQ=255)

                                                                                     aCAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCg    <  1:5558743/93‑1 (MQ=255)

                                                                                      cAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGc   <  2:3482160/93‑1 (MQ=255)

AGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCT  >  NC_000913/3359209‑3359388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACA  >  NC_000913/3359206‑3359392

TTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGTATTCACGCGGCGGACGATACAGGC                                                                                               >  SRR4302533.5371991/1‑94 (MQ=60)

TTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGC                                                                                               <  SRR4302533.3073710/94‑1 (MQ=60)

 TTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCG                                                                                              <  SRR4302533.853070/94‑1 (MQ=60)

 TTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCG                                                                                              <  SRR4302533.143557/94‑1 (MQ=60)

 TTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCG                                                                                              <  SRR4302533.1602343/94‑1 (MQ=60)

   AGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAA                                                                                            >  SRR4302533.454530/1‑94 (MQ=60)

   AGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAA                                                                                            >  SRR4302533.3175999/1‑94 (MQ=60)

    GGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAA                                                                                           <  SRR4302533.5019562/94‑1 (MQ=60)

    GGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAA                                                                                           >  SRR4302533.1975624/1‑94 (MQ=60)

     GTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACTGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAAT                                                                                          <  SRR4302533.4467709/94‑1 (MQ=60)

     GTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAAT                                                                                          <  SRR4302533.1064588/94‑1 (MQ=60)

      TTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATT                                                                                         >  SRR4302533.3274473/1‑94 (MQ=60)

      TTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATT                                                                                         >  SRR4302533.4902658/1‑94 (MQ=60)

      TTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATT                                                                                         <  SRR4302533.2712124/94‑1 (MQ=60)

       TCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTC                                                                                        >  SRR4302533.3184442/1‑94 (MQ=60)

        CTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCC                                                                                       >  SRR4302533.2291073/1‑94 (MQ=60)

        CTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCC                                                                                       >  SRR4302533.1464439/1‑94 (MQ=60)

         TGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCT                                                                                      >  SRR4302533.5985021/1‑94 (MQ=60)

          GCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTG                                                                                     <  SRR4302533.338674/94‑1 (MQ=60)

           CGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGT                                                                                    >  SRR4302533.5323054/1‑94 (MQ=60)

             CCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCG                                                                                  >  SRR4302533.4928863/1‑94 (MQ=60)

             CCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCG                                                                                  <  SRR4302533.2047812/94‑1 (MQ=60)

             CCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCG                                                                                  >  SRR4302533.204674/1‑94 (MQ=60)

              CTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGA                                                                                 >  SRR4302533.3266187/1‑94 (MQ=60)

              CTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGA                                                                                 >  SRR4302533.5682180/1‑94 (MQ=60)

              CTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGA                                                                                 >  SRR4302533.4920879/1‑94 (MQ=60)

               TAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAC                                                                                <  SRR4302533.2408715/94‑1 (MQ=60)

               TAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGAC                                                                                >  SRR4302533.5863239/1‑94 (MQ=60)

                AATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACC                                                                               <  SRR4302533.748073/94‑1 (MQ=60)

                AATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACC                                                                               <  SRR4302533.5901205/94‑1 (MQ=60)

                 ATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCT                                                                              <  SRR4302533.5267471/94‑1 (MQ=60)

                 ATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCT                                                                              >  SRR4302533.2143777/1‑94 (MQ=60)

                  TGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTG                                                                             <  SRR4302533.2621474/94‑1 (MQ=60)

                   GGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGA                                                                            >  SRR4302533.3276220/1‑94 (MQ=60)

                   GGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGA                                                                            >  SRR4302533.5627193/1‑94 (MQ=60)

                    GACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGAT                                                                           >  SRR4302533.6217331/1‑94 (MQ=60)

                     ACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATT                                                                          <  SRR4302533.5204897/94‑1 (MQ=60)

                      CAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTC                                                                         <  SRR4302533.4811472/94‑1 (MQ=60)

                      CAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTC                                                                         >  SRR4302533.2570667/1‑94 (MQ=60)

                       AAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCA                                                                        >  SRR4302533.804791/1‑94 (MQ=60)

                        AAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAA                                                                       <  SRR4302533.597725/94‑1 (MQ=60)

                        AAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAA                                                                       <  SRR4302533.4706532/94‑1 (MQ=60)

                         AAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAA                                                                      >  SRR4302533.3303966/1‑94 (MQ=60)

                           AATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACT                                                                    >  SRR4302533.3375950/1‑94 (MQ=60)

                           AATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACT                                                                    <  SRR4302533.5307669/94‑1 (MQ=60)

                            ATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTG                                                                   >  SRR4302533.2877869/1‑94 (MQ=60)

                              TGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGAC                                                                 >  SRR4302533.4430436/1‑94 (MQ=60)

                              TGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGAC                                                                 <  SRR4302533.161941/94‑1 (MQ=60)

                               GGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACC                                                                <  SRR4302533.498925/94‑1 (MQ=60)

                                 CGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGATCTGATTCAAACTGACCAC                                                              >  SRR4302533.1353402/1‑94 (MQ=60)

                                   CTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTG                                                            >  SRR4302533.4484924/1‑94 (MQ=60)

                                    TGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGG                                                           >  SRR4302533.3245579/1‑94 (MQ=60)

                                    TGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGG                                                           <  SRR4302533.1610907/94‑1 (MQ=60)

                                    TGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGG                                                           <  SRR4302533.5367310/94‑1 (MQ=60)

                                    TGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGG                                                           <  SRR4302533.2602860/94‑1 (MQ=60)

                                    TGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAAATGACCACTGG                                                           >  SRR4302533.5111070/1‑94 (MQ=60)

                                     GCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGT                                                          <  SRR4302533.3463603/94‑1 (MQ=60)

                                     GCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGT                                                          <  SRR4302533.5047954/94‑1 (MQ=60)

                                      CATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGCAATTCCTGTCGACCTGATTCAAACTGACCACTGGGC                                                         >  SRR4302533.4978634/1‑94 (MQ=60)

                                      CATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTC                                                         >  SRR4302533.142076/1‑94 (MQ=60)

                                      CATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTC                                                         >  SRR4302533.4978635/1‑94 (MQ=60)

                                       ATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCA                                                        >  SRR4302533.4984938/1‑94 (MQ=60)

                                       ATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTCTCGACCTGATTCAAACTGACCACTGGTCA                                                        >  SRR4302533.5491029/1‑94 (MQ=60)

                                        TCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAG                                                       >  SRR4302533.4556772/1‑94 (MQ=60)

                                         CCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGTTTCAAACTGACCACTGGTCAGC                                                      >  SRR4302533.3404032/1‑94 (MQ=60)

                                          CATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCA                                                     <  SRR4302533.3485592/94‑1 (MQ=60)

                                          CATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCA                                                     >  SRR4302533.2612552/1‑94 (MQ=60)

                                          CATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCA                                                     <  SRR4302533.2623470/94‑1 (MQ=60)

                                          CATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCA                                                     >  SRR4302533.4896414/1‑94 (MQ=60)

                                            TTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGC                                                   >  SRR4302533.3486297/1‑94 (MQ=60)

                                             TGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCG                                                  >  SRR4302533.1979751/1‑94 (MQ=60)

                                              GGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGA                                                 <  SRR4302533.992903/94‑1 (MQ=60)

                                               GTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGAC                                                >  SRR4302533.2557544/1‑94 (MQ=60)

                                               GTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGAC                                                >  SRR4302533.5891456/1‑94 (MQ=60)

                                                TATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACC                                               >  SRR4302533.2019952/1‑94 (MQ=60)

                                                TATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACC                                               >  SRR4302533.1723839/1‑94 (MQ=60)

                                                 ATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCC                                              <  SRR4302533.1324179/94‑1 (MQ=60)

                                                    GACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCA                                           <  SRR4302533.4107071/94‑1 (MQ=60)

                                                      CAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACA                                         >  SRR4302533.5571545/1‑94 (MQ=60)

                                                       AGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACAT                                        <  SRR4302533.5042407/94‑1 (MQ=60)

                                                        GGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATG                                       >  SRR4302533.1118368/1‑94 (MQ=60)

                                                        GGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATG                                       <  SRR4302533.1772156/94‑1 (MQ=60)

                                                        GGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATG                                       >  SRR4302533.1748172/1‑94 (MQ=60)

                                                         GTCTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGG                                      <  SRR4302533.5039498/94‑1 (MQ=60)

                                                           CTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAA                                    <  SRR4302533.3273051/94‑1 (MQ=60)

                                                           CTAATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAA                                    <  SRR4302533.2451407/94‑1 (MQ=60)

                                                             AATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAG                                  <  SRR4302533.3617298/94‑1 (MQ=60)

                                                             AATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAG                                  <  SRR4302533.6049195/94‑1 (MQ=60)

                                                              ATGGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGC                                 >  SRR4302533.5773448/1‑94 (MQ=60)

                                                                GGTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCT                               >  SRR4302533.1035140/1‑94 (MQ=60)

                                                                 GTGTGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTC                              <  SRR4302533.1185928/94‑1 (MQ=60)

                                                                 GTGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTC                              >  SRR4302533.176161/1‑94 (MQ=60)

                                                                  TGGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCGCTGGTCAGCAGCGACCCCCACATGGAAAGCCTCA                             <  SRR4302533.2636210/94‑1 (MQ=60)

                                                                   GGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCAT                            <  SRR4302533.5470830/94‑1 (MQ=60)

                                                                   GGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCAT                            <  SRR4302533.1998261/94‑1 (MQ=60)

                                                                   GGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCAT                            <  SRR4302533.6077573/94‑1 (MQ=60)

                                                                   GGGATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCAT                            >  SRR4302533.2193930/1‑94 (MQ=60)

                                                                     GATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCT                          >  SRR4302533.5320267/1‑94 (MQ=60)

                                                                     GATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCT                          <  SRR4302533.1912180/94‑1 (MQ=60)

                                                                     GATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACACCCACATGGAAAGCCTCATCT                          >  SRR4302533.4064804/1‑94 (MQ=60)

                                                                      ATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTA                         >  SRR4302533.1014570/1‑94 (MQ=60)

                                                                      ATTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTA                         >  SRR4302533.4378639/1‑94 (MQ=60)

                                                                       TTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAA                        >  SRR4302533.5055596/1‑94 (MQ=60)

                                                                       TTCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAA                        <  SRR4302533.2057867/94‑1 (MQ=60)

                                                                        TCACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAAT                       <  SRR4302533.3345945/94‑1 (MQ=60)

                                                                         CACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATG                      <  SRR4302533.1346978/94‑1 (MQ=60)

                                                                         CACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATG                      <  SRR4302533.3696123/94‑1 (MQ=60)

                                                                         CACGCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATG                      <  SRR4302533.3260648/94‑1 (MQ=60)

                                                                           gctgtatGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGC                    <  SRR4302533.3168137/87‑1 (MQ=60)

                                                                            GCGGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCG                   >  SRR4302533.6164537/1‑94 (MQ=60)

                                                                              GGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCA                 <  SRR4302533.6143938/94‑1 (MQ=60)

                                                                              CGCGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCA                 <  SRR4302533.2884438/94‑1 (MQ=60)

                                                                                CGGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATT               >  SRR4302533.4062495/1‑94 (MQ=60)

                                                                                 GGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTC              <  SRR4302533.1324493/94‑1 (MQ=60)

                                                                                 GGACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTC              >  SRR4302533.393951/1‑94 (MQ=60)

                                                                                  GACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCT             <  SRR4302533.4271598/94‑1 (MQ=60)

                                                                                  GACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCT             <  SRR4302533.892792/94‑1 (MQ=60)

                                                                                  GACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCT             <  SRR4302533.1301151/94‑1 (MQ=60)

                                                                                  GACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCT             <  SRR4302533.206333/94‑1 (MQ=60)

                                                                                  GACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCT             <  SRR4302533.3445291/94‑1 (MQ=60)

                                                                                   ACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTG            <  SRR4302533.6299081/94‑1 (MQ=60)

                                                                                   ACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTG            <  SRR4302533.5592100/94‑1 (MQ=60)

                                                                                   ACGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTG            <  SRR4302533.4308085/94‑1 (MQ=60)

                                                                                    CGATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGC           >  SRR4302533.152098/1‑94 (MQ=60)

                                                                                      ATACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTC         <  SRR4302533.1399052/94‑1 (MQ=60)

                                                                                       TACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCG        <  SRR4302533.5403484/94‑1 (MQ=60)

                                                                                       TACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGAGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCG        <  SRR4302533.4460425/94‑1 (MQ=60)

                                                                                        ACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGC       <  SRR4302533.5592340/94‑1 (MQ=60)

                                                                                        ACAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGCCCGCAGCGAACCCCCCATGGAAAGCCCCATCTAATGGCGCATTCTGCTCGC       >  SRR4302533.4555654/1‑94 (MQ=60)

                                                                                         CAGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCT      <  SRR4302533.2166633/94‑1 (MQ=60)

                                                                                          AGGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTG     <  SRR4302533.1171079/94‑1 (MQ=60)

                                                                                           GGCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGA    <  SRR4302533.2260198/94‑1 (MQ=60)

                                                                                            GCGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGAC   <  SRR4302533.4307173/94‑1 (MQ=60)

                                                                                             CGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACA  >  SRR4302533.4419099/1‑94 (MQ=60)

                                                                                             CGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACA  >  SRR4302533.2630355/1‑94 (MQ=60)

                                                                                             CGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACA  <  SRR4302533.4943512/94‑1 (MQ=60)

TTTAGGTTCTGCGCCTAATGGACAAAAAATTGGCGCTGCATCCATTGGTATTGACAGGTCTAATGGTGGGATTCACGCGGCGGACGATACAGGTGAAATTCCTGTCGACCTGATTCAAACTGACCACTGGTCAGCAGCGACCCCCACATGGAAAGCCTCATCTAATGGCGCATTCTGCTCGCTGACA  >  NC_000913/3359206‑3359392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`