Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,365,636	A→G	R59G (AGG→GGG)	yhcG →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,365,636	0	A	G	100.0%	745.6 / NA	232	R59G (AGG→GGG)	yhcG	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (109/123); total (109/123)

Only 100 of 245 total aligned reads displayed.

GAAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCAGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGC  >  NC_000913/3365546‑3365725

gaAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCggg                                                                                         >  2:2781860/1‑93 (MQ=255)

gaAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCggg                                                                                         >  2:5143830/1‑93 (MQ=255)

    cGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTg                                                                                     >  1:754698/1‑93 (MQ=255)

        aCGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTa                                                                                 <  2:2728945/93‑1 (MQ=255)

        aCGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTa                                                                                 >  2:5836199/1‑93 (MQ=255)

          gTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGTATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATg                                                                               >  1:3610456/1‑93 (MQ=255)

          gTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATg                                                                               <  1:1003957/93‑1 (MQ=255)

           tAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATgg                                                                              <  2:3963376/93‑1 (MQ=255)

              cGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTgc                                                                           <  2:2337891/93‑1 (MQ=255)

                ttAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTgcgc                                                                         >  2:5569430/1‑93 (MQ=255)

                ttAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTgcgc                                                                         >  2:1170613/1‑93 (MQ=255)

                 tAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCa                                                                        <  1:3889147/93‑1 (MQ=255)

                  aaCGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAg                                                                       >  1:444656/1‑93 (MQ=255)

                     gcgTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTa                                                                    >  2:5640323/1‑93 (MQ=255)

                      gtttAAGGACGGGGACGTAAGAGGAAATTGGCCGACGATTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTaa                                                                   <  2:786774/91‑1 (MQ=255)

                       gTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAAt                                                                  >  2:6052562/1‑93 (MQ=255)

                        ttAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATc                                                                 >  2:925118/1‑93 (MQ=255)

                        ttAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATc                                                                 >  2:4385197/1‑93 (MQ=255)

                        ttAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATc                                                                 <  1:922138/93‑1 (MQ=255)

                          aaTGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCaa                                                               <  1:3127666/93‑1 (MQ=255)

                          aaTGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCaa                                                               <  1:5645375/93‑1 (MQ=255)

                          aaTGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCaa                                                               >  1:4637794/1‑93 (MQ=255)

                            tGACCGCGACGTACCAGGAAATTGGCCGACGAGTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGc                                                             <  1:6303692/93‑1 (MQ=255)

                            tGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGc                                                             <  2:3543277/93‑1 (MQ=255)

                                cgcgACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACt                                                         >  1:997746/1‑93 (MQ=255)

                                 gcgACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTa                                                        >  2:1508649/1‑93 (MQ=255)

                                 gcgACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTa                                                        >  2:4801288/1‑93 (MQ=255)

                                  cgACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTAt                                                       <  1:2752792/93‑1 (MQ=255)

                                   gACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATc                                                      <  1:4308899/93‑1 (MQ=255)

                                   gACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATc                                                      >  2:4524154/1‑93 (MQ=255)

                                    aCGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCa                                                     >  1:1557213/1‑93 (MQ=255)

                                     cGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCaa                                                    <  2:3229133/93‑1 (MQ=255)

                                      gTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCaaa                                                   <  2:37401/93‑1 (MQ=255)

                                      gTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCaaa                                                   >  2:618606/1‑93 (MQ=255)

                                      gTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCaaa                                                   <  1:2965758/93‑1 (MQ=255)

                                       tACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAg                                                  <  1:5350512/93‑1 (MQ=255)

                                        aCCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAgg                                                 <  1:91559/93‑1 (MQ=255)

                                        aCCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAgg                                                 <  2:6080131/93‑1 (MQ=255)

                                        aCCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAgg                                                 <  2:2011623/93‑1 (MQ=255)

                                        aCCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAgg                                                 <  2:1330283/93‑1 (MQ=255)

                                         ccAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGCGGCGAGGCCGGGGCTGCGTATGGGGTGCAGCGAATCAAGCGACTATCAAAGGa                                                >  2:4566875/1‑93 (MQ=255)

                                         ccAGGAAATTGGCCGACGAATTGTCGAATCTGAACAAGGTGGCGAGGCCGGCGGTGCGTGCGGTGCGCAGGTAATCAAGCGCCTATCAAAGGa                                                <  2:4087446/93‑1 (MQ=255)

                                          cAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAt                                               <  1:5570434/93‑1 (MQ=255)

                                          cAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAt                                               <  2:5671463/93‑1 (MQ=255)

                                           aGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAtt                                              <  1:5727768/93‑1 (MQ=255)

                                            ggAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAttt                                             >  2:4037034/1‑93 (MQ=255)

                                            ggAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAttt                                             >  2:1869035/1‑93 (MQ=255)

                                             gAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTa                                            <  1:1453192/93‑1 (MQ=255)

                                             gAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTa                                            <  2:4250205/93‑1 (MQ=255)

                                             gAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTa                                            <  2:3387142/93‑1 (MQ=255)

                                              aaaTTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTAt                                           <  2:6243161/93‑1 (MQ=255)

                                               aaTTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATg                                          <  2:291754/93‑1 (MQ=255)

                                               aaTTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATg                                          >  2:2557781/1‑93 (MQ=255)

                                                aTTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGt                                         >  2:1425919/1‑93 (MQ=255)

                                                    gCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTaa                                     <  2:4843512/93‑1 (MQ=255)

                                                    gCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTaa                                     <  1:5905158/93‑1 (MQ=255)

                                                    gCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTaa                                     <  2:5024831/93‑1 (MQ=255)

                                                      cgacgaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAgg                                   >  2:4933799/1‑93 (MQ=255)

                                                      cgacgaATGGTCGAAGTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAgg                                   <  2:249606/93‑1 (MQ=255)

                                                       gacgaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGt                                  >  2:287582/1‑93 (MQ=255)

                                                       gacgaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGt                                  >  2:3170094/1‑93 (MQ=255)

                                                        acgaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGta                                 <  2:2146157/93‑1 (MQ=255)

                                                        acgaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGta                                 <  1:6115471/93‑1 (MQ=255)

                                                         cgaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGtat                                <  1:1668604/93‑1 (MQ=255)

                                                         cgaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGtat                                >  2:1036421/1‑93 (MQ=255)

                                                          gaATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGtata                               <  1:3671879/93‑1 (MQ=255)

                                                           aaTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATaa                              <  2:4174167/93‑1 (MQ=255)

                                                           aaTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATaa                              >  1:5243876/1‑93 (MQ=255)

                                                           aaTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATaa                              <  2:1792323/93‑1 (MQ=255)

                                                            aTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAg                             <  1:3993314/93‑1 (MQ=255)

                                                            aTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAg                             >  2:1380021/1‑93 (MQ=255)

                                                             ttGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGc                            <  1:241044/93‑1 (MQ=255)

                                                             ttGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGc                            >  2:5341271/1‑93 (MQ=255)

                                                              tGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCg                           <  1:4896007/93‑1 (MQ=255)

                                                               gTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGt                          <  1:4155833/93‑1 (MQ=255)

                                                               gTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGt                          >  2:3185568/1‑93 (MQ=255)

                                                                tCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTg                         <  1:2026128/93‑1 (MQ=255)

                                                                     tttGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTtc                    >  2:2234204/1‑93 (MQ=255)

                                                                     tttGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTtc                    <  2:3071549/93‑1 (MQ=255)

                                                                      ttGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTtct                   >  2:696711/1‑93 (MQ=255)

                                                                        gAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTctct                 >  1:1754810/1‑93 (MQ=255)

                                                                         aaCAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTg                >  2:873107/1‑93 (MQ=255)

                                                                          aCAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGc               >  1:1819647/1‑93 (MQ=255)

                                                                          aCAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGc               >  2:5351750/1‑93 (MQ=255)

                                                                            aaGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCaa             <  1:2182133/93‑1 (MQ=255)

                                                                             aGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCaaa            >  2:1245110/1‑93 (MQ=255)

                                                                              ggTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCaaaa           >  2:5742646/1‑93 (MQ=255)

                                                                               gTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCaaaaa          >  1:250443/1‑93 (MQ=255)

                                                                                    gAGGCCGGGGCTGCTTAGGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTa     <  2:3835570/93‑1 (MQ=255)

                                                                                    gAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTa     <  2:3305486/93‑1 (MQ=255)

                                                                                    gAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTa     <  1:4617005/93‑1 (MQ=255)

                                                                                     aGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAc    >  1:1645023/1‑93 (MQ=255)

                                                                                     aGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAc    >  1:2357061/1‑93 (MQ=255)

                                                                                     aGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAc    >  1:3329229/1‑93 (MQ=255)

                                                                                     aGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAc    >  2:3804821/1‑93 (MQ=255)

                                                                                      ggCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACg   <  1:2249020/93‑1 (MQ=255)

                                                                                      ggCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACg   <  2:2281529/93‑1 (MQ=255)

                                                                                      ggCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACg   >  1:3182230/1‑93 (MQ=255)

                                                                                      ggCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACg   <  2:1676091/93‑1 (MQ=255)

                                                                                       gCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGc  <  1:5140638/93‑1 (MQ=255)

GAAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCAGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGC  >  NC_000913/3365546‑3365725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGGAAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCAGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGCCAAA  >  NC_000913/3365543‑3365729

ACGGAAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCG                                                                                               >  SRR4302533.2943870/1‑94 (MQ=60)

ACGGAAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCG                                                                                               >  SRR4302533.3452838/1‑94 (MQ=60)

  GGAAACGGAACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGG                                                                                             >  SRR4302533.4870954/1‑94 (MQ=60)

   GAAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGG                                                                                            >  SRR4302533.245981/1‑94 (MQ=60)

      ACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTG                                                                                         >  SRR4302533.759139/1‑94 (MQ=60)

       CGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGC                                                                                        >  SRR4302533.6174485/1‑94 (MQ=60)

           ACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTAT                                                                                    >  SRR4302533.2963477/1‑94 (MQ=60)

            CGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGTATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATG                                                                                   >  SRR4302533.3632676/1‑94 (MQ=60)

             GTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGG                                                                                  <  SRR4302533.1009827/94‑1 (MQ=60)

              TAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGT                                                                                 <  SRR4302533.529866/94‑1 (MQ=60)

              TAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGT                                                                                 <  SRR4302533.1636357/94‑1 (MQ=60)

                    TAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAG                                                                           <  SRR4302533.3912877/94‑1 (MQ=60)

                    TAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAG                                                                           <  SRR4302533.1682878/94‑1 (MQ=60)

                    TAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAG                                                                           >  SRR4302533.1743067/1‑94 (MQ=60)

                    TAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAG                                                                           >  SRR4302533.5252010/1‑94 (MQ=60)

                    TAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAG                                                                           >  SRR4302533.447316/1‑94 (MQ=60)

                           TTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCA                                                                    <  SRR4302533.927551/94‑1 (MQ=60)

                           TTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCA                                                                    <  SRR4302533.3592816/94‑1 (MQ=60)

                            TAATGACGGCGACGTAGCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAA                                                                   <  SRR4302533.4776057/94‑1 (MQ=60)

                            TAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAA                                                                   >  SRR4302533.4665895/1‑94 (MQ=60)

                            TAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAA                                                                   >  SRR4302533.5820042/1‑94 (MQ=60)

                             AATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAG                                                                  <  SRR4302533.5679505/94‑1 (MQ=60)

                             AATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAG                                                                  <  SRR4302533.2346554/94‑1 (MQ=60)

                             AATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAG                                                                  <  SRR4302533.3146891/94‑1 (MQ=60)

                               TGACCGCGACGTACCAGGAAATTGGCCGACGAGTTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCG                                                                <  SRR4302533.6341377/94‑1 (MQ=60)

                                GACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGA                                                               <  SRR4302533.6263209/94‑1 (MQ=60)

                                 ACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGAC                                                              <  SRR4302533.4254996/94‑1 (MQ=60)

                                  CCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACT                                                             >  SRR4302533.1003572/1‑94 (MQ=60)

                                  CCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACT                                                             <  SRR4302533.4444260/94‑1 (MQ=60)

                                   CGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTA                                                            >  SRR4302533.5839685/1‑94 (MQ=60)

                                   CGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTA                                                            >  SRR4302533.990202/1‑94 (MQ=60)

                                    GCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTAT                                                           <  SRR4302533.3301292/94‑1 (MQ=60)

                                     CGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATC                                                          <  SRR4302533.2769672/94‑1 (MQ=60)

                                     CGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATC                                                          >  SRR4302533.2463923/1‑94 (MQ=60)

                                     CGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATC                                                          <  SRR4302533.3606456/94‑1 (MQ=60)

                                      GACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCA                                                         >  SRR4302533.4333770/1‑94 (MQ=60)

                                      GACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCA                                                         <  SRR4302533.4334836/94‑1 (MQ=60)

                                      GACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCA                                                         >  SRR4302533.1566585/1‑94 (MQ=60)

                                      GACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCA                                                         >  SRR4302533.1890143/1‑94 (MQ=60)

                                         GTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAG                                                      <  SRR4302533.2983885/94‑1 (MQ=60)

                                          TACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGG                                                     <  SRR4302533.4540480/94‑1 (MQ=60)

                                          TACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGG                                                     <  SRR4302533.5382618/94‑1 (MQ=60)

                                           ACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCGAAGGA                                                    >  SRR4302533.1247405/1‑94 (MQ=60)

                                           ACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGA                                                    <  SRR4302533.92139/94‑1 (MQ=60)

                                            CCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAT                                                   >  SRR4302533.1489860/1‑94 (MQ=60)

                                            CCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAT                                                   >  SRR4302533.4622967/1‑94 (MQ=60)

                                            CCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAT                                                   >  SRR4302533.3657278/1‑94 (MQ=60)

                                            CCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGAT                                                   >  SRR4302533.6097093/1‑94 (MQ=60)

                                             CAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATT                                                  <  SRR4302533.5604105/94‑1 (MQ=60)

                                             CAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATT                                                  >  SRR4302533.2809216/1‑94 (MQ=60)

                                              AGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTT                                                 <  SRR4302533.5762355/94‑1 (MQ=60)

                                                GAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTAT                                               <  SRR4302533.1461957/94‑1 (MQ=60)

                                                GAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTAT                                               >  SRR4302533.3014664/1‑94 (MQ=60)

                                                 AAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATG                                              <  SRR4302533.2226263/94‑1 (MQ=60)

                                                 AAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATG                                              <  SRR4302533.1658344/94‑1 (MQ=60)

                                                 AAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATG                                              <  SRR4302533.3155261/94‑1 (MQ=60)

                                                     TGGCCGACGAATTGTCGAATTTGAACAAGGAGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTA                                          >  SRR4302533.2618445/1‑94 (MQ=60)

                                                       GCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAG                                        <  SRR4302533.5940821/94‑1 (MQ=60)

                                                          GACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTA                                     <  SRR4302533.2173771/94‑1 (MQ=60)

                                                          GACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTA                                     >  SRR4302533.937145/1‑94 (MQ=60)

                                                           ACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTAT                                    <  SRR4302533.6152368/94‑1 (MQ=60)

                                                           ACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTAT                                    <  SRR4302533.923954/94‑1 (MQ=60)

                                                            CGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATA                                   <  SRR4302533.3190893/94‑1 (MQ=60)

                                                            CGAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATA                                   <  SRR4302533.1678685/94‑1 (MQ=60)

                                                             GAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAA                                  <  SRR4302533.3694447/94‑1 (MQ=60)

                                                             GAATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAA                                  >  SRR4302533.5275394/1‑94 (MQ=60)

                                                              AATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAG                                 <  SRR4302533.379626/94‑1 (MQ=60)

                                                               ATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGC                                <  SRR4302533.4017626/94‑1 (MQ=60)

                                                               ATTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGC                                >  SRR4302533.1967381/1‑94 (MQ=60)

                                                                TTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCG                               <  SRR4302533.242541/94‑1 (MQ=60)

                                                                TTGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCG                               <  SRR4302533.5460095/94‑1 (MQ=60)

                                                                 TGTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGT                              <  SRR4302533.4925673/94‑1 (MQ=60)

                                                                  GTCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTG                             <  SRR4302533.4181013/94‑1 (MQ=60)

                                                                   TCGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGG                            <  SRR4302533.2038638/94‑1 (MQ=60)

                                                                    CGAATTTGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGG                           <  SRR4302533.875831/94‑1 (MQ=60)

                                                                     GAATTTGAACAAGGTGGCGACGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGACTTATGTCTAAGGTATAAGCGTGGGT                          >  SRR4302533.5629035/1‑94 (MQ=60)

                                                                          TGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCT                     <  SRR4302533.2416515/94‑1 (MQ=60)

                                                                          TGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCT                     >  SRR4302533.1765498/1‑94 (MQ=60)

                                                                          TGAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCT                     <  SRR4302533.3753124/94‑1 (MQ=60)

                                                                           GAACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTG                    <  SRR4302533.1782903/94‑1 (MQ=60)

                                                                            AACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGC                   >  SRR4302533.1830763/1‑94 (MQ=60)

                                                                            AACAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGC                   <  SRR4302533.1578780/94‑1 (MQ=60)

                                                                              CAAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAA                 >  SRR4302533.4142027/1‑94 (MQ=60)

                                                                               AAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAA                <  SRR4302533.2195585/94‑1 (MQ=60)

                                                                               AAGGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAA                >  SRR4302533.3960472/1‑94 (MQ=60)

                                                                                 GGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAA              <  SRR4302533.2228176/94‑1 (MQ=60)

                                                                                 GGTGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAA              >  SRR4302533.251988/1‑94 (MQ=60)

                                                                                   TGGCGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAAC            >  SRR4302533.672887/1‑94 (MQ=60)

                                                                                      CGAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTA         <  SRR4302533.799613/94‑1 (MQ=60)

                                                                                       GAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAC        >  SRR4302533.3349805/1‑94 (MQ=60)

                                                                                       GAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAC        >  SRR4302533.5702644/1‑94 (MQ=60)

                                                                                       GAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAC        >  SRR4302533.1654984/1‑94 (MQ=60)

                                                                                       GAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAC        >  SRR4302533.2371632/1‑94 (MQ=60)

                                                                                       GAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAC        >  SRR4302533.499304/1‑94 (MQ=60)

                                                                                       GAGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTAC        <  SRR4302533.4644961/94‑1 (MQ=60)

                                                                                        AGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACG       <  SRR4302533.4656108/94‑1 (MQ=60)

                                                                                        AGGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACG       >  SRR4302533.3201808/1‑94 (MQ=60)

                                                                                        AGGACGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACG       <  SRR4302533.1048286/94‑1 (MQ=60)

                                                                                         GGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGC      <  SRR4302533.5610731/94‑1 (MQ=60)

                                                                                         GGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGC      <  SRR4302533.5174917/94‑1 (MQ=60)

                                                                                         GGCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGC      <  SRR4302533.2262919/94‑1 (MQ=60)

                                                                                          GCCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGCC     <  SRR4302533.5171707/94‑1 (MQ=60)

                                                                                           CCGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGCCA    >  SRR4302533.538068/1‑94 (MQ=60)

                                                                                            CGGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGCCAA   <  SRR4302533.2221080/94‑1 (MQ=60)

                                                                                             GGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGCCAAA  <  SRR4302533.889103/94‑1 (MQ=60)

                                                                                             GGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGCCAAA  >  SRR4302533.4047329/1‑94 (MQ=60)

ACGGAAACGGTACGTAGCGTTAACGCGTTAATGACCGCGACGTACCAGGAAATTGGCCGACGAATTGTCGAATTTGAACAAGGTGGCGAGGCCAGGGCTGCGTATGGTGCGCAGCTAATCAAGCGACTATCAAAGGATTTATGTCTAAGGTATAAGCGTGGGTTCTCTGCAAAAAACTTACGCCAAA  >  NC_000913/3365543‑3365729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`