Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,366,054	A→G	H198R (CAC→CGC)	yhcG →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,366,054	0	A	G	100.0%	801.4 / NA	249	H198R (CAC→CGC)	yhcG	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (124/125); total (124/125)

Only 100 of 271 total aligned reads displayed.

GGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACACGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAG  >  NC_000913/3365964‑3366143

ggTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAAcgcg                                                                                         >  1:4262924/1‑93 (MQ=255)

ggTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAAcgcg                                                                                         >  2:3583461/1‑93 (MQ=255)

    tGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTcc                                                                                     <  1:1831814/93‑1 (MQ=255)

    tGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTcc                                                                                     >  1:2281832/1‑93 (MQ=255)

     gTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCt                                                                                    <  1:1476658/93‑1 (MQ=255)

         gCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCg                                                                                <  2:3966756/93‑1 (MQ=255)

            aGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCgaga                                                                             <  2:230912/93‑1 (MQ=255)

              cTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACg                                                                           >  2:5094879/1‑93 (MQ=255)

               tAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGc                                                                          >  2:5248702/1‑93 (MQ=255)

                agagCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCa                                                                         <  1:1150599/93‑1 (MQ=255)

                agagCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCa                                                                         <  2:4282436/93‑1 (MQ=255)

                agagCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCa                                                                         >  1:1345/1‑93 (MQ=255)

                 gagCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCat                                                                        >  1:1381529/1‑93 (MQ=255)

                 gagCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCat                                                                        >  1:2490585/1‑93 (MQ=255)

                  agCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCata                                                                       <  1:1920500/93‑1 (MQ=255)

                  agCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCata                                                                       <  1:2992913/93‑1 (MQ=255)

                  agCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCata                                                                       <  1:870608/93‑1 (MQ=255)

                  agCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCata                                                                       <  2:1318924/93‑1 (MQ=255)

                   gCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCatat                                                                      <  1:4059861/93‑1 (MQ=255)

                    cGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAtt                                                                     <  1:5447726/93‑1 (MQ=255)

                     ggCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAttc                                                                    >  2:819298/1‑93 (MQ=255)

                      gCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAttct                                                                   <  2:120996/93‑1 (MQ=255)

                      gCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAttct                                                                   >  2:2958102/1‑93 (MQ=255)

                       cAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAttctt                                                                  <  1:3711130/93‑1 (MQ=255)

                        aaaTTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCgaga                                                                             >  2:3722847/1‑81 (MQ=255)

                         aaTTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTcc                                                                <  2:1432850/93‑1 (MQ=255)

                          aTTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCg                                                               >  2:6289693/1‑93 (MQ=255)

                           ctGCGACCCTGTTTGATGAGCGGACACTACTGTCACAGGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGc                                                              <  2:3630840/92‑1 (MQ=255)

                               gACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACa                                                          <  2:4791777/93‑1 (MQ=255)

                               gACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACa                                                          >  2:4403430/1‑93 (MQ=255)

                               gACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACa                                                          >  1:3444548/1‑93 (MQ=255)

                                aCCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAg                                                         >  1:5720253/1‑93 (MQ=255)

                                 cccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAgg                                                        <  1:3966434/93‑1 (MQ=255)

                                 cccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAgg                                                        <  1:4153483/93‑1 (MQ=255)

                                 cccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAgg                                                        <  1:3178592/93‑1 (MQ=255)

                                 cccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAgg                                                        <  1:3027849/93‑1 (MQ=255)

                                  ccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAgga                                                       >  1:3092879/1‑92 (MQ=255)

                                  ccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGc                                                       >  2:2287582/1‑93 (MQ=255)

                                  ccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGc                                                       <  2:4983368/93‑1 (MQ=255)

                                  ccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGc                                                       >  2:5538116/1‑93 (MQ=255)

                                  ccAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGc                                                       >  2:885174/1‑93 (MQ=255)

                                   cAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCg                                                      >  2:2124463/1‑93 (MQ=255)

                                   cAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCg                                                      <  1:742333/93‑1 (MQ=255)

                                   cAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCg                                                      >  1:5634882/1‑93 (MQ=255)

                                    aGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGa                                                     <  1:1097736/93‑1 (MQ=255)

                                    aGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGa                                                     <  2:1624247/93‑1 (MQ=255)

                                    aGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGa                                                     >  1:4784960/1‑93 (MQ=255)

                                     gTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGAt                                                    >  1:6054488/1‑93 (MQ=255)

                                     gTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGAt                                                    >  2:6073887/1‑93 (MQ=255)

                                     gTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGAt                                                    >  2:4138551/1‑93 (MQ=255)

                                      ttttATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGAc                                                                            <  1:4827264/68‑1 (MQ=255)

                                       tttATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATAc                                                  <  1:130586/93‑1 (MQ=255)

                                         taggAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATAcgc                                                <  2:5784182/90‑1 (MQ=255)

                                         tATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATAcgc                                                <  1:996484/93‑1 (MQ=255)

                                         tATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATAcgc                                                >  2:1659387/1‑93 (MQ=255)

                                           tgcgCGGACACTACTGTCACATGACAACTCAGCCATCCTGCAACAACGCGCCCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGa                                              <  1:3274474/90‑1 (MQ=255)

                                                ggACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCt                                         >  2:4586934/1‑93 (MQ=255)

                                                 gACACTACTGTCACATAACAAATCTGCCATGCTGCAACACCGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCtt                                        <  1:4902047/93‑1 (MQ=255)

                                                   cacTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtg                                      <  1:3766114/93‑1 (MQ=255)

                                                   cacTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtg                                      <  1:401541/93‑1 (MQ=255)

                                                   cacTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtg                                      >  2:3040904/1‑93 (MQ=255)

                                                   cacTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCAAGACGCATATTCTTCAGCAACAGGCGATACGCAATCTCTTtg                                      >  2:3275147/1‑93 (MQ=255)

                                                    actactGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtgt                                     <  2:5347312/93‑1 (MQ=255)

                                                    actactGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtgt                                     >  1:5380684/1‑93 (MQ=255)

                                                     ctactGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtgtg                                    >  1:1954593/1‑93 (MQ=255)

                                                     ctactGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtgtg                                    >  1:1618784/1‑93 (MQ=255)

                                                     ctactGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTtgtg                                    >  1:6295629/1‑93 (MQ=255)

                                                      tactGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGc                                   >  1:1013151/1‑93 (MQ=255)

                                                        ctGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTc                                 <  2:3465211/93‑1 (MQ=255)

                                                        ctGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTACGCAACAGGCGATACGCGATCCCTTTGTGCTc                                 >  1:2140375/1‑93 (MQ=255)

                                                           tCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGaa                              <  2:3126180/93‑1 (MQ=255)

                                                            cacaTGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAAt                             <  1:1288575/93‑1 (MQ=255)

                                                             acaTGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAAtt                            <  2:1077504/93‑1 (MQ=255)

                                                              caTGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAAttt                           >  1:616215/1‑93 (MQ=255)

                                                               aTGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTc                          >  1:2223683/1‑93 (MQ=255)

                                                                tGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCt                         >  2:3885241/1‑93 (MQ=255)

                                                                   cAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGa                      >  2:2885815/1‑93 (MQ=255)

                                                                   cAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGa                      >  2:613755/1‑93 (MQ=255)

                                                                     aaTCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAt                    <  2:1943448/93‑1 (MQ=255)

                                                                     aaTCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAt                    >  2:4855380/1‑93 (MQ=255)

                                                                      aTCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAtt                   <  2:3394741/93‑1 (MQ=255)

                                                                      aTCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAtt                   <  2:669170/93‑1 (MQ=255)

                                                                      aTCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAtt                   >  2:326577/1‑93 (MQ=255)

                                                                       tCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTg                  >  2:421288/1‑93 (MQ=255)

                                                                             aTGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGAt            <  1:2338883/93‑1 (MQ=255)

                                                                             aTGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGAt            <  1:360899/93‑1 (MQ=255)

                                                                                 tgcAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAat        <  2:3867883/93‑1 (MQ=255)

                                                                                 tgcAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAat        <  2:2525217/93‑1 (MQ=255)

                                                                                  gcAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAata       <  1:2771776/93‑1 (MQ=255)

                                                                                  gcAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAata       <  2:1831003/93‑1 (MQ=255)

                                                                                  gcAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAata       >  1:5790782/1‑93 (MQ=255)

                                                                                    aacaacGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAtt     <  2:5006051/93‑1 (MQ=255)

                                                                                    aacaacGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAtt     >  1:4296042/1‑93 (MQ=255)

                                                                                    aacaacGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAtt     >  1:2919633/1‑93 (MQ=255)

                                                                                     acaacgCGCCCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTc    <  1:3873213/93‑1 (MQ=255)

                                                                                      caacgCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCa   <  1:4564831/93‑1 (MQ=255)

                                                                                      caacgCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCa   <  1:2672510/93‑1 (MQ=255)

                                                                                      caacgCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCa   <  1:4648134/93‑1 (MQ=255)

                                                                                       aacgCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAg  <  2:6255046/93‑1 (MQ=255)

                                                                                       aacgCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAg  >  1:5183128/1‑93 (MQ=255)

GGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACACGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAG  >  NC_000913/3365964‑3366143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACACGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAGAATC  >  NC_000913/3365961‑3366147

GCTGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACG                                                                                               >  SRR4302533.3514915/1‑94 (MQ=60)

GCTGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACG                                                                                               >  SRR4302533.5942785/1‑94 (MQ=60)

 CTGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGC                                                                                              >  SRR4302533.2401062/1‑94 (MQ=60)

 CTGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGC                                                                                              >  SRR4302533.738864/1‑94 (MQ=60)

 CTGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGC                                                                                              >  SRR4302533.3136344/1‑94 (MQ=60)

  TGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCG                                                                                             >  SRR4302533.4288605/1‑94 (MQ=60)

  TGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCG                                                                                             <  SRR4302533.3267000/94‑1 (MQ=60)

  TGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCG                                                                                             >  SRR4302533.6037179/1‑94 (MQ=60)

  TGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCG                                                                                             >  SRR4302533.1197902/1‑94 (MQ=60)

    GTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCT                                                                                           >  SRR4302533.4147015/1‑94 (MQ=60)

      CTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCC                                                                                         >  SRR4302533.2295956/1‑94 (MQ=60)

       TGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCT                                                                                        <  SRR4302533.756562/94‑1 (MQ=60)

       TGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCT                                                                                        <  SRR4302533.1842996/94‑1 (MQ=60)

       TGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCT                                                                                        <  SRR4302533.699780/94‑1 (MQ=60)

       TGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCT                                                                                        <  SRR4302533.4036117/94‑1 (MQ=60)

        GTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTG                                                                                       <  SRR4302533.1485584/94‑1 (MQ=60)

             CCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAG                                                                                  >  SRR4302533.4184855/1‑94 (MQ=60)

              CAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGA                                                                                 >  SRR4302533.2899607/1‑94 (MQ=60)

              CAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGA                                                                                 >  SRR4302533.2360864/1‑94 (MQ=60)

               atctgctgtatCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGAC                                                                                <  SRR4302533.3745691/83‑1 (MQ=60)

               AGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGAC                                                                                <  SRR4302533.5083706/94‑1 (MQ=60)

                acccgctcttccgatctgctgtatGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACG                                                                               <  SRR4302533.4856517/70‑1 (MQ=60)

                GCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACG                                                                               <  SRR4302533.663389/94‑1 (MQ=60)

                  TAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCA                                                                             >  SRR4302533.1359/1‑94 (MQ=60)

                   AGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCAT                                                                            >  SRR4302533.1389846/1‑94 (MQ=60)

                   AGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCAT                                                                            <  SRR4302533.1297601/94‑1 (MQ=60)

                   AGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCAT                                                                            <  SRR4302533.1157490/94‑1 (MQ=60)

                   AGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCAT                                                                            >  SRR4302533.2505925/1‑94 (MQ=60)

                     AGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAT                                                                          <  SRR4302533.3011210/94‑1 (MQ=60)

                     AGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAT                                                                          <  SRR4302533.1136481/94‑1 (MQ=60)

                     AGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAT                                                                          <  SRR4302533.1932224/94‑1 (MQ=60)

                     AGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATAT                                                                          <  SRR4302533.875717/94‑1 (MQ=60)

                      GCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATT                                                                         <  SRR4302533.4084573/94‑1 (MQ=60)

                       CGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTC                                                                        <  SRR4302533.5480545/94‑1 (MQ=60)

                       CGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTC                                                                        <  SRR4302533.5435135/94‑1 (MQ=60)

                         GCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTT                                                                      <  SRR4302533.3171913/94‑1 (MQ=60)

                          CAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTC                                                                     <  SRR4302533.3733920/94‑1 (MQ=60)

                          CAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTC                                                                     >  SRR4302533.2630887/1‑94 (MQ=60)

                           AAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCC                                                                    >  SRR4302533.355921/1‑94 (MQ=60)

                           AAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCC                                                                    >  SRR4302533.1065892/1‑94 (MQ=60)

                             ATTGCGACCCAGTTTTATAAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGC                                                                  <  SRR4302533.4297600/94‑1 (MQ=60)

                              TTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCA                                                                 <  SRR4302533.5823343/94‑1 (MQ=60)

                              TTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCA                                                                 >  SRR4302533.1389107/1‑94 (MQ=60)

                                GCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAAC                                                               <  SRR4302533.5471632/94‑1 (MQ=60)

                                GCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAAC                                                               >  SRR4302533.1369878/1‑94 (MQ=60)

                                GCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAAC                                                               <  SRR4302533.483013/94‑1 (MQ=60)

                                GCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAAC                                                               >  SRR4302533.4448518/1‑94 (MQ=60)

                                 CGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACA                                                              <  SRR4302533.1594888/94‑1 (MQ=60)

                                 CGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACA                                                              <  SRR4302533.6310153/94‑1 (MQ=60)

                                 CGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACA                                                              >  SRR4302533.3465820/1‑94 (MQ=60)

                                  GACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAG                                                             >  SRR4302533.2091779/1‑94 (MQ=60)

                                  GACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAG                                                             >  SRR4302533.5754791/1‑94 (MQ=60)

                                  GACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAG                                                             >  SRR4302533.1566573/1‑94 (MQ=60)

                                  GACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAAAAG                                                             >  SRR4302533.4007244/1‑94 (MQ=60)

                                    CCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGC                                                           <  SRR4302533.3046379/94‑1 (MQ=60)

                                    CCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGC                                                           <  SRR4302533.3198145/94‑1 (MQ=60)

                                    CCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGC                                                           <  SRR4302533.3990597/94‑1 (MQ=60)

                                    CCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGC                                                           <  SRR4302533.4178651/94‑1 (MQ=60)

                                    CCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGA                                                           >  SRR4302533.3111894/1‑94 (MQ=60)

                                     CCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCG                                                          >  SRR4302533.5813162/1‑94 (MQ=60)

                                     CCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCG                                                          >  SRR4302533.5668958/1‑94 (MQ=60)

                                      CAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGA                                                         <  SRR4302533.603948/94‑1 (MQ=60)

                                      CAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGA                                                         >  SRR4302533.4813942/1‑94 (MQ=60)

                                      CAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGA                                                         <  SRR4302533.746703/94‑1 (MQ=60)

                                       AGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGAT                                                        >  SRR4302533.6091153/1‑94 (MQ=60)

                                       AGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGAT                                                        <  SRR4302533.1104238/94‑1 (MQ=60)

                                        GTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATA                                                       <  SRR4302533.3794277/94‑1 (MQ=60)

                                        GTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATA                                                       >  SRR4302533.2301443/1‑94 (MQ=60)

                                         TTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATAC                                                      <  SRR4302533.3701975/94‑1 (MQ=60)

                                         TTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATAC                                                      <  SRR4302533.2210666/94‑1 (MQ=60)

                                          TTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACG                                                     <  SRR4302533.131405/94‑1 (MQ=60)

                                           TTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGC                                                    <  SRR4302533.1351076/94‑1 (MQ=60)

                                           TTATGAGCGGACACTACTGGCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGC                                                    <  SRR4302533.1912974/94‑1 (MQ=60)

                                            TATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCG                                                   <  SRR4302533.1002303/94‑1 (MQ=60)

                                             ATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGA                                                  <  SRR4302533.4079941/94‑1 (MQ=60)

                                              TGCGCGGACACTACTGTCACATGACAACTCAGCCATCCTGCAACAACGCGCCCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGAT                                                 <  SRR4302533.3294690/94‑1 (MQ=60)

                                              TGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGAT                                                 <  SRR4302533.615768/94‑1 (MQ=60)

                                              TGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGAT                                                 <  SRR4302533.971981/94‑1 (MQ=60)

                                              TGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGAT                                                 <  SRR4302533.1127302/94‑1 (MQ=60)

                                               GAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATC                                                <  SRR4302533.4150910/94‑1 (MQ=60)

                                                AGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCC                                               >  SRR4302533.2971622/1‑94 (MQ=60)

                                                 GCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCC                                              <  SRR4302533.2014386/94‑1 (MQ=60)

                                                   GGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTT                                            <  SRR4302533.6173233/94‑1 (MQ=60)

                                                    GACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTT                                           <  SRR4302533.5655347/94‑1 (MQ=60)

                                                    GACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTT                                           <  SRR4302533.3910992/94‑1 (MQ=60)

                                                    GACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTT                                           >  SRR4302533.2992070/1‑94 (MQ=60)

                                                    GACACTACTGTCACATAACAAATCTGCCATGCTGCAACACCGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTT                                           <  SRR4302533.4931751/94‑1 (MQ=60)

                                                      CACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGT                                         >  SRR4302533.424752/1‑94 (MQ=60)

                                                      CACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGT                                         >  SRR4302533.5413011/1‑94 (MQ=60)

                                                      CACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGT                                         >  SRR4302533.4670659/1‑94 (MQ=60)

                                                      CACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGT                                         <  SRR4302533.403964/94‑1 (MQ=60)

                                                      CACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGT                                         <  SRR4302533.3789201/94‑1 (MQ=60)

                                                       ACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTG                                        >  SRR4302533.1966502/1‑94 (MQ=60)

                                                       ACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTG                                        >  SRR4302533.6333176/1‑94 (MQ=60)

                                                       ACTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTG                                        >  SRR4302533.1628590/1‑94 (MQ=60)

                                                        CTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGC                                       >  SRR4302533.751953/1‑94 (MQ=60)

                                                        CTACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGC                                       >  SRR4302533.1019082/1‑94 (MQ=60)

                                                         TACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCT                                      >  SRR4302533.1958858/1‑94 (MQ=60)

                                                          ACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTC                                     >  SRR4302533.3078465/1‑94 (MQ=60)

                                                          ACTGTCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTACGCAACAGGCGATACGCGATCCCTTTGTGCTC                                     >  SRR4302533.2153569/1‑94 (MQ=60)

                                                              TCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAAT                                 <  SRR4302533.5489724/94‑1 (MQ=60)

                                                              TCACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAAT                                 <  SRR4302533.3576534/94‑1 (MQ=60)

                                                               CACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATT                                <  SRR4302533.1296332/94‑1 (MQ=60)

                                                               CACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATT                                >  SRR4302533.4682391/1‑94 (MQ=60)

                                                                ACATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTT                               >  SRR4302533.619834/1‑94 (MQ=60)

                                                                 CATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTC                              >  SRR4302533.3147030/1‑94 (MQ=60)

                                                                 CATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTC                              >  SRR4302533.2237417/1‑94 (MQ=60)

                                                                 CATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTC                              >  SRR4302533.2472875/1‑94 (MQ=60)

                                                                  ATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCT                             >  SRR4302533.3089580/1‑94 (MQ=60)

                                                                  ATGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCT                             <  SRR4302533.2173935/94‑1 (MQ=60)

                                                                   TGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTG                            >  SRR4302533.3387085/1‑94 (MQ=60)

                                                                   TGACAAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTG                            >  SRR4302533.4898218/1‑94 (MQ=60)

                                                                       AAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAT                        >  SRR4302533.5721175/1‑94 (MQ=60)

                                                                       AAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAT                        <  SRR4302533.2550238/94‑1 (MQ=60)

                                                                       AAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAT                        >  SRR4302533.2749095/1‑94 (MQ=60)

                                                                       AAATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAAT                        <  SRR4302533.1782260/94‑1 (MQ=60)

                                                                         ATCAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTG                      >  SRR4302533.4565791/1‑94 (MQ=60)

                                                                           CAGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAA                    <  SRR4302533.1337688/94‑1 (MQ=60)

                                                                            AGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGTTCCCTTTGTGCTCGAATTTCTGGAATTGAAA                   >  SRR4302533.2283368/1‑94 (MQ=60)

                                                                            AGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAA                   >  SRR4302533.464757/1‑94 (MQ=60)

                                                                            AGCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAA                   <  SRR4302533.1749410/94‑1 (MQ=60)

                                                                             GCCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAG                  <  SRR4302533.3690895/94‑1 (MQ=60)

                                                                              CCATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGA                 <  SRR4302533.3039354/94‑1 (MQ=60)

                                                                                ATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATG               <  SRR4302533.363095/94‑1 (MQ=60)

                                                                                ATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATG               >  SRR4302533.3207963/1‑94 (MQ=60)

                                                                                ATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATG               <  SRR4302533.2353367/94‑1 (MQ=60)

                                                                                ATGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATG               >  SRR4302533.1872533/1‑94 (MQ=60)

                                                                                 TGCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGA              >  SRR4302533.289058/1‑94 (MQ=60)

                                                                                  GCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAA             <  SRR4302533.3213034/94‑1 (MQ=60)

                                                                                  GCTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAA             <  SRR4302533.1483587/94‑1 (MQ=60)

                                                                                  GCTCCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAA             <  SRR4302533.4829050/94‑1 (MQ=60)

                                                                                   CTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAAT            <  SRR4302533.4965323/94‑1 (MQ=60)

                                                                                   CTGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAAT            >  SRR4302533.3828997/1‑94 (MQ=60)

                                                                                    TGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATA           >  SRR4302533.5825767/1‑94 (MQ=60)

                                                                                    TGCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATA           >  SRR4302533.4876895/1‑94 (MQ=60)

                                                                                     GCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAT          <  SRR4302533.2301742/94‑1 (MQ=60)

                                                                                     GCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAT          >  SRR4302533.1267074/1‑94 (MQ=60)

                                                                                     GCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAT          <  SRR4302533.3944460/94‑1 (MQ=60)

                                                                                     GCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAT          >  SRR4302533.5329031/1‑94 (MQ=60)

                                                                                     GCAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATAT          <  SRR4302533.2788784/94‑1 (MQ=60)

                                                                                      CAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATT         >  SRR4302533.2937521/1‑94 (MQ=60)

                                                                                      CAACAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATT         >  SRR4302533.4321880/1‑94 (MQ=60)

                                                                                        ACAACGCGCCCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCA       <  SRR4302533.3896853/94‑1 (MQ=60)

                                                                                         CAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAG      <  SRR4302533.4592507/94‑1 (MQ=60)

                                                                                         CAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAG      <  SRR4302533.4676298/94‑1 (MQ=60)

                                                                                         CAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAG      >  SRR4302533.5214421/1‑94 (MQ=60)

                                                                                         CAACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAG      <  SRR4302533.2688905/94‑1 (MQ=60)

                                                                                           ACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAGAA    >  SRR4302533.4180742/1‑94 (MQ=60)

                                                                                           ACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAGAA    >  SRR4302533.154862/1‑94 (MQ=60)

                                                                                           ACGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAGAA    <  SRR4302533.5653099/94‑1 (MQ=60)

                                                                                            CGCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAGAAT   >  SRR4302533.1089671/1‑94 (MQ=60)

                                                                                             GCGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAGAATC  <  SRR4302533.3183670/94‑1 (MQ=60)

GCTGGTCTGTTCGCCAGCTAGAGCGGCAAATTGCGACCCAGTTTTATGAGCGGACACTACTGTCACATGACAAATCAGCCATGCTGCAACAACACGCTCCTGCCGAGACGCATATTCTTCCGCAACAGGCGATACGCGATCCCTTTGTGCTCGAATTTCTGGAATTGAAAGATGAATATTCAGAATC  >  NC_000913/3365961‑3366147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`