Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,367,240	T→C	Y249C (TAT→TGT)	yhcI ←	putative NAGC‑like transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,367,240	0	T	C	100.0%	773.4 / NA	243	Y249C (TAT→TGT)	yhcI	putative NAGC‑like transcriptional regulator
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (114/129); total (114/129)

Only 100 of 251 total aligned reads displayed.

AAACCTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGATACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTA  >  NC_000913/3367150‑3367329

aaaCCTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGacac                                                                                         >  2:4094890/1‑93 (MQ=255)

 aaCCTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACAcc                                                                                        >  1:8371/1‑93 (MQ=255)

 aaCCTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACAcc                                                                                        >  2:1907666/1‑93 (MQ=255)

 aaCCTGCATCATGGCGGCAATTGGCCGCCCGTACAGCAACATGAAATGCCGCTGGCTCCTGCGCCAGGTACGTTTCCACCAGCGCCACACAcc                                                                                        >  2:4338121/1‑93 (MQ=255)

  aCCTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACAccc                                                                                       >  1:4954521/1‑93 (MQ=255)

   ccTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCCCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCt                                                                                      >  1:6241031/1‑93 (MQ=255)

   ccTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCAGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCt                                                                                      <  1:4086310/93‑1 (MQ=255)

    cTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCtt                                                                                     >  1:4786059/1‑93 (MQ=255)

    cTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCtt                                                                                     <  1:3738919/93‑1 (MQ=255)

      gCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCt                                                                                   >  1:2230289/1‑93 (MQ=255)

         tcatGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGcc                                                                                >  1:4800351/1‑93 (MQ=255)

         tcatGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGcc                                                                                >  2:3085682/1‑93 (MQ=255)

          catGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCa                                                                               >  2:2258455/1‑93 (MQ=255)

           atGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAg                                                                              >  1:229954/1‑93 (MQ=255)

            tGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGa                                                                             >  1:3423725/1‑93 (MQ=255)

             ggCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGAc                                                                            <  2:4279463/93‑1 (MQ=255)

                ggTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCaa                                                                         >  2:102941/1‑93 (MQ=255)

                ggTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCaa                                                                         >  1:5756819/1‑93 (MQ=255)

                 gTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAAc                                                                        <  1:5095003/93‑1 (MQ=255)

                   aaTGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGc                                                                      <  1:483034/93‑1 (MQ=255)

                   aaTGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGc                                                                      <  1:3265524/93‑1 (MQ=255)

                      gcgcCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGc                                                                   <  2:1255702/93‑1 (MQ=255)

                       cgccgcCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGcc                                                                  >  2:3510047/1‑93 (MQ=255)

                        gccgccAGTAAATCAACATGAAATGCCGCTGGGTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCa                                                                 >  1:5550644/1‑93 (MQ=255)

                          cgccAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCAcc                                                               >  1:1033545/1‑93 (MQ=255)

                           gccAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCg                                                              <  1:5432683/93‑1 (MQ=255)

                           gccAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCg                                                              >  2:5537535/1‑93 (MQ=255)

                             cAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGac                                                            <  1:4738397/93‑1 (MQ=255)

                             cAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTACCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGac                                                            <  2:4068934/93‑1 (MQ=255)

                              aGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGacc                                                           >  1:1173237/1‑93 (MQ=255)

                               gTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGacca                                                          >  2:2178420/1‑93 (MQ=255)

                               gTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGacca                                                          <  2:2304502/93‑1 (MQ=255)

                                tAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGaccac                                                         <  2:1823486/93‑1 (MQ=255)

                                 aaaTCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGaccacc                                                        <  2:2543189/93‑1 (MQ=255)

                                  aaTCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGAccacca                                                       <  2:2484017/93‑1 (MQ=255)

                                   aTCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACcaccac                                                      >  1:156680/1‑93 (MQ=255)

                                   aTCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACcaccac                                                      <  1:5478811/93‑1 (MQ=255)

                                      aaCATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCa                                                   <  1:4308912/93‑1 (MQ=255)

                                      aaCATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCa                                                   <  2:4561027/93‑1 (MQ=255)

                                        cATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACt                                                 <  2:814196/93‑1 (MQ=255)

                                        cATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACt                                                 <  2:6245813/93‑1 (MQ=255)

                                        cATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACt                                                 >  1:1042791/1‑93 (MQ=255)

                                        cATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACt                                                 <  1:4241078/93‑1 (MQ=255)

                                         aTGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTg                                                <  2:747161/93‑1 (MQ=255)

                                         aTGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTg                                                <  1:3494789/93‑1 (MQ=255)

                                         aTGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTg                                                <  2:6144304/93‑1 (MQ=255)

                                         aTGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTg                                                <  1:847705/93‑1 (MQ=255)

                                          tGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTgg                                               >  1:4888743/1‑93 (MQ=255)

                                          tGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTgg                                               <  2:5242212/93‑1 (MQ=255)

                                            aaaTGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCa                                             >  2:3949464/1‑93 (MQ=255)

                                              aTGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAAt                                           >  2:3709152/1‑93 (MQ=255)

                                               tGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATc                                          >  2:4895924/1‑93 (MQ=255)

                                               tGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATc                                          <  2:4685673/93‑1 (MQ=255)

                                                gCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCa                                         <  1:3561516/93‑1 (MQ=255)

                                                gCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCa                                         >  1:1625009/1‑93 (MQ=255)

                                                gCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCa                                         <  1:5298623/93‑1 (MQ=255)

                                                gCCGCTGGCTCCTGCGCCAGATACGTTCCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCa                                         <  2:1535768/93‑1 (MQ=255)

                                                  cGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGt                                       <  1:984517/93‑1 (MQ=255)

                                                   gCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGtt                                      <  1:3934838/93‑1 (MQ=255)

                                                   gCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGtt                                      <  1:245557/93‑1 (MQ=255)

                                                    cTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAACCAGTtg                                     >  2:2663447/1‑93 (MQ=255)

                                                     tGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTtgt                                    <  1:2035338/93‑1 (MQ=255)

                                                      ggCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTtgtg                                   >  1:6210652/1‑93 (MQ=255)

                                                         tCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCt                                <  1:4377617/93‑1 (MQ=255)

                                                         tCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCt                                >  1:1298487/1‑93 (MQ=255)

                                                          ccTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCtt                               >  1:5070381/1‑93 (MQ=255)

                                                          ccTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCtt                               >  1:3802543/1‑93 (MQ=255)

                                                           cTGCGCCAGATACGTTTCCACCAGCGCCAGACCCCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCttt                              <  1:4483442/93‑1 (MQ=255)

                                                           cTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCttt                              <  2:2070287/93‑1 (MQ=255)

                                                           cTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCttt                              >  1:2153174/1‑93 (MQ=255)

                                                             ccgcCAGATCCTTTCCCCCCAGCGCCAGACCCCCTTCTGCCAGCCCACCGCTCCCCCCGACCACCACGCACTGGCAATCAGTTGTGGCTTTaa                            <  2:216623/92‑1 (MQ=255)

                                                              cgcCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAat                           <  1:525738/93‑1 (MQ=255)

                                                              cgcCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAat                           >  1:602279/1‑93 (MQ=255)

                                                              cgcCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAat                           <  1:294571/93‑1 (MQ=255)

                                                               gcCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAata                          <  1:4185698/93‑1 (MQ=255)

                                                                ccAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAatat                         <  2:1595778/93‑1 (MQ=255)

                                                                 cAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATc                        <  1:4981410/93‑1 (MQ=255)

                                                                 cAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATc                        <  2:6053359/93‑1 (MQ=255)

                                                                 cAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATc                        >  1:3183818/1‑93 (MQ=255)

                                                                  aGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCa                       >  1:1842517/1‑93 (MQ=255)

                                                                   gATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAg                      <  1:4562560/93‑1 (MQ=255)

                                                                    aTACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGc                     <  2:5933096/93‑1 (MQ=255)

                                                                      aCGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGa                   <  2:1324252/93‑1 (MQ=255)

                                                                      aCGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGa                   >  1:610789/1‑93 (MQ=255)

                                                                       cGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGAt                  <  1:2120322/93‑1 (MQ=255)

                                                                        gTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATc                 >  2:3370004/1‑93 (MQ=255)

                                                                        gTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATc                 <  1:3444190/93‑1 (MQ=255)

                                                                         tttCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCa                <  2:2896067/93‑1 (MQ=255)

                                                                         tttCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCa                >  2:2995035/1‑93 (MQ=255)

                                                                         tttCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCa                <  1:2725797/93‑1 (MQ=255)

                                                                         tttCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCa                >  1:3215765/1‑93 (MQ=255)

                                                                         tttCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCa                <  1:3610174/93‑1 (MQ=255)

                                                                          ttCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAg               >  2:2474453/1‑93 (MQ=255)

                                                                          ttCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAg               <  1:4700589/93‑1 (MQ=255)

                                                                               ccaGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTg          >  2:2755813/1‑93 (MQ=255)

                                                                                  gcgcCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCaa       <  2:5504462/93‑1 (MQ=255)

                                                                                   cgcCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAg      <  1:2849145/93‑1 (MQ=255)

                                                                                   cgcCAGACACCCTGCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAg      <  2:5846455/93‑1 (MQ=255)

                                                                                     ccAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCg    >  2:1146366/1‑93 (MQ=255)

                                                                                      cAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGt   >  1:538840/1‑93 (MQ=255)

AAACCTGCATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGATACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTA  >  NC_000913/3367150‑3367329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGTAAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGATACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTACG  >  NC_000913/3367147‑3367331

AGTAAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGAC                                                                                             <  SRR4302533.3089719/94‑1 (MQ=60)

AGTAAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGAC                                                                                             >  SRR4302533.4998522/1‑94 (MQ=60)

AGTAAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGAC                                                                                             <  SRR4302533.5963352/94‑1 (MQ=60)

AGTAAACCTG‑CATCATGACGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGAC                                                                                             <  SRR4302533.4489545/94‑1 (MQ=60)

 GTAAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACA                                                                                            <  SRR4302533.3204920/94‑1 (MQ=60)

 GTAAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACA                                                                                            <  SRR4302533.4183985/94‑1 (MQ=60)

 ATAAACCTG‑CATCATGGCGGTAATGCCCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACA                                                                                            <  SRR4302533.1346144/94‑1 (MQ=60)

   AAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACC                                                                                          >  SRR4302533.8446/1‑94 (MQ=60)

   AAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACC                                                                                          >  SRR4302533.8445/1‑94 (MQ=60)

    AACCTGCCATCAGGGC‑GTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCC                                                                                         <  SRR4302533.5543662/94‑1 (MQ=60)

    AACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCC                                                                                         >  SRR4302533.4984533/1‑94 (MQ=60)

    AACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCC                                                                                         <  SRR4302533.2742312/94‑1 (MQ=60)

    AACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCC                                                                                         <  SRR4302533.5301769/94‑1 (MQ=60)

    AACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCC                                                                                         <  SRR4302533.745588/94‑1 (MQ=60)

     ACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCT                                                                                        <  SRR4302533.1833491/94‑1 (MQ=60)

     ACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCT                                                                                        >  SRR4302533.1361855/1‑94 (MQ=60)

     ACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCCCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCT                                                                                        >  SRR4302533.6278398/1‑94 (MQ=60)

      CCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTT                                                                                       >  SRR4302533.4815045/1‑94 (MQ=60)

      CCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCAGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTT                                                                                       <  SRR4302533.4111185/94‑1 (MQ=60)

       CTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTC                                                                                      <  SRR4302533.3761850/94‑1 (MQ=60)

       CTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTC                                                                                      >  SRR4302533.2051379/1‑94 (MQ=60)

       CTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTC                                                                                      >  SRR4302533.4936359/1‑94 (MQ=60)

        TG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCT                                                                                     <  SRR4302533.2090646/94‑1 (MQ=60)

        TG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCT                                                                                     <  SRR4302533.6270299/94‑1 (MQ=60)

        TG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCT                                                                                     >  SRR4302533.2244052/1‑94 (MQ=60)

        TG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCT                                                                                     <  SRR4302533.4819771/94‑1 (MQ=60)

            ATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCC                                                                                  >  SRR4302533.4829427/1‑94 (MQ=60)

            ATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCC                                                                                  >  SRR4302533.995354/1‑94 (MQ=60)

            ATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGCTTCCACCAGCGCCAGACACCCTTCTGCC                                                                                  >  SRR4302533.4345821/1‑94 (MQ=60)

              CATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAG                                                                                >  SRR4302533.231378/1‑94 (MQ=60)

              CATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAG                                                                                <  SRR4302533.5816609/94‑1 (MQ=60)

               ATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGA                                                                               >  SRR4302533.3444876/1‑94 (MQ=60)

                TGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGAC                                                                              >  SRR4302533.1408095/1‑94 (MQ=60)

                  GCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCA                                                                            <  SRR4302533.1148514/94‑1 (MQ=60)

                   CGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAA                                                                           >  SRR4302533.5791558/1‑94 (MQ=60)

                   CGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAA                                                                           <  SRR4302533.244492/94‑1 (MQ=60)

                    GGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAAC                                                                          >  SRR4302533.545345/1‑94 (MQ=60)

                     GTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACG                                                                         >  SRR4302533.5784678/1‑94 (MQ=60)

                     GTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACG                                                                         <  SRR4302533.4154549/94‑1 (MQ=60)

                     GTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACG                                                                         <  SRR4302533.5125782/94‑1 (MQ=60)

                       AATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCT                                                                       <  SRR4302533.3582836/94‑1 (MQ=60)

                       AATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCT                                                                       <  SRR4302533.3553879/94‑1 (MQ=60)

                       AATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCT                                                                       <  SRR4302533.2224194/94‑1 (MQ=60)

                       AATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCT                                                                       <  SRR4302533.3285675/94‑1 (MQ=60)

                       AATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCT                                                                       <  SRR4302533.485917/94‑1 (MQ=60)

                          GCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCC                                                                    <  SRR4302533.1047384/94‑1 (MQ=60)

                          GCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCC                                                                    <  SRR4302533.2423694/94‑1 (MQ=60)

                           CGCCGCCAGTAAATCAACATGAAATGCCGCTGGGTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCA                                                                   >  SRR4302533.5584165/1‑94 (MQ=60)

                             CCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACC                                                                 >  SRR4302533.1039625/1‑94 (MQ=60)

                             CCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACC                                                                 >  SRR4302533.4811196/1‑94 (MQ=60)

                             CCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACC                                                                 <  SRR4302533.5196893/94‑1 (MQ=60)

                              CGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCG                                                                >  SRR4302533.306590/1‑94 (MQ=60)

                               GCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGA                                                               >  SRR4302533.3261111/1‑94 (MQ=60)

                               GCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGA                                                               <  SRR4302533.5465400/94‑1 (MQ=60)

                                CCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGAC                                                              >  SRR4302533.4417790/1‑94 (MQ=60)

                                CCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGAC                                                              <  SRR4302533.6083074/94‑1 (MQ=60)

                                 CAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACC                                                             <  SRR4302533.4767128/94‑1 (MQ=60)

                                 CAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACC                                                             >  SRR4302533.1180279/1‑94 (MQ=60)

                                   GTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCAC                                                           >  SRR4302533.1731115/1‑94 (MQ=60)

                                    TAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACC                                                          >  SRR4302533.4773015/1‑94 (MQ=60)

                                    TAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACC                                                          >  SRR4302533.4556182/1‑94 (MQ=60)

                                     AAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCA                                                         >  SRR4302533.3731971/1‑94 (MQ=60)

                                     AAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCA                                                         >  SRR4302533.4855157/1‑94 (MQ=60)

                                     AAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCA                                                         >  SRR4302533.4227568/1‑94 (MQ=60)

                                      AATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCAC                                                        >  SRR4302533.157678/1‑94 (MQ=60)

                                       ATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACG                                                       <  SRR4302533.5511841/94‑1 (MQ=60)

                                          AACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCAC                                                    >  SRR4302533.5888917/1‑94 (MQ=60)

                                          AACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCAC                                                    <  SRR4302533.4334849/94‑1 (MQ=60)

                                          AACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCAC                                                    >  SRR4302533.2144020/1‑94 (MQ=60)

                                           ACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACT                                                   >  SRR4302533.1048923/1‑94 (MQ=60)

                                            CATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTG                                                  >  SRR4302533.3590942/1‑94 (MQ=60)

                                            CATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTG                                                  <  SRR4302533.6230241/94‑1 (MQ=60)

                                            CATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTG                                                  <  SRR4302533.4266689/94‑1 (MQ=60)

                                             ATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGG                                                 <  SRR4302533.852666/94‑1 (MQ=60)

                                             ATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGG                                                 <  SRR4302533.3516343/94‑1 (MQ=60)

                                             ATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGG                                                 >  SRR4302533.4918364/1‑94 (MQ=60)

                                             ATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGG                                                 <  SRR4302533.4986390/94‑1 (MQ=60)

                                             ATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGG                                                 <  SRR4302533.3848962/94‑1 (MQ=60)

                                              TGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGC                                                <  SRR4302533.4874951/94‑1 (MQ=60)

                                              TGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGC                                                >  SRR4302533.3970907/1‑94 (MQ=60)

                                              TGAAATGCCGCTGGCTCCTGCGCCAGATACGTGTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGC                                                <  SRR4302533.2852447/94‑1 (MQ=60)

                                                AAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAA                                              >  SRR4302533.2827099/1‑94 (MQ=60)

                                                 AATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAAT                                             >  SRR4302533.4285251/1‑94 (MQ=60)

                                                 AATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAAT                                             <  SRR4302533.2264190/94‑1 (MQ=60)

                                                  ATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATC                                            <  SRR4302533.3741911/94‑1 (MQ=60)

                                                   TGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCA                                           <  SRR4302533.4302835/94‑1 (MQ=60)

                                                   TGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCA                                           <  SRR4302533.335822/94‑1 (MQ=60)

                                                   TGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCA                                           <  SRR4302533.485299/94‑1 (MQ=60)

                                                   TGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCA                                           >  SRR4302533.1634850/1‑94 (MQ=60)

                                                    GCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAG                                          <  SRR4302533.5330364/94‑1 (MQ=60)

                                                    GCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAG                                          <  SRR4302533.3583461/94‑1 (MQ=60)

                                                     GCGCTGGCTCCGGCGCCAGATACGTTGCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGT                                         <  SRR4302533.3469283/94‑1 (MQ=60)

                                                      CGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTT                                        <  SRR4302533.990285/94‑1 (MQ=60)

                                                       GCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTG                                       <  SRR4302533.1909848/94‑1 (MQ=60)

                                                       GCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTG                                       >  SRR4302533.2187187/1‑94 (MQ=60)

                                                       GCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTG                                       <  SRR4302533.247077/94‑1 (MQ=60)

                                                       GCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTG                                       <  SRR4302533.3958856/94‑1 (MQ=60)

                                                       GCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTG                                       <  SRR4302533.4451666/94‑1 (MQ=60)

                                                         TGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTG                                     <  SRR4302533.2047891/94‑1 (MQ=60)

                                                         TGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTG                                     >  SRR4302533.6247899/1‑94 (MQ=60)

                                                            CTCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCT                                  >  SRR4302533.1306301/1‑94 (MQ=60)

                                                             TCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTT                                 >  SRR4302533.5101032/1‑94 (MQ=60)

                                                             TCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTT                                 <  SRR4302533.4404045/94‑1 (MQ=60)

                                                             TCCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTT                                 >  SRR4302533.3825812/1‑94 (MQ=60)

                                                              CCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTT                                >  SRR4302533.393514/1‑94 (MQ=60)

                                                              CCTGCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTT                                >  SRR4302533.2166437/1‑94 (MQ=60)

                                                               CTGCGCCAGATACGTTTCCACCAGCGCCAGACCCCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTA                               <  SRR4302533.4510592/94‑1 (MQ=60)

                                                                 GCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAAT                             >  SRR4302533.872293/1‑94 (MQ=60)

                                                                 GCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAAT                             >  SRR4302533.3458658/1‑94 (MQ=60)

                                                                 GCGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAAT                             >  SRR4302533.605819/1‑94 (MQ=60)

                                                                  CGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATA                            <  SRR4302533.296371/94‑1 (MQ=60)

                                                                  CGCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATA                            <  SRR4302533.528854/94‑1 (MQ=60)

                                                                   GCNANANANGTTTNCACCAGCGCCAGACACNCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATAT                           <  SRR4302533.300786/94‑1 (MQ=60)

                                                                   GCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATAT                           <  SRR4302533.4211043/94‑1 (MQ=60)

                                                                   GCCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATAT                           <  SRR4302533.5146979/94‑1 (MQ=60)

                                                                    CCAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATC                          >  SRR4302533.3203404/1‑94 (MQ=60)

                                                                     CAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCA                         >  SRR4302533.1853753/1‑94 (MQ=60)

                                                                     CAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCA                         <  SRR4302533.5011608/94‑1 (MQ=60)

                                                                     CAGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCA                         <  SRR4302533.3226949/94‑1 (MQ=60)

                                                                      AGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAG                        <  SRR4302533.5408834/94‑1 (MQ=60)

                                                                      AGATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAG                        <  SRR4302533.4604592/94‑1 (MQ=60)

                                                                       GATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGC                       <  SRR4302533.4590229/94‑1 (MQ=60)

                                                                        ATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCGGCG                      >  SRR4302533.3151575/1‑94 (MQ=60)

                                                                        ATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCG                      >  SRR4302533.3283913/1‑94 (MQ=60)

                                                                        ATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCG                      <  SRR4302533.1145130/94‑1 (MQ=60)

                                                                        ATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCG                      <  SRR4302533.1243617/94‑1 (MQ=60)

                                                                        ATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCG                      >  SRR4302533.161277/1‑94 (MQ=60)

                                                                        ATACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGCTGTGGCTTTAATATCAGCG                      >  SRR4302533.3806693/1‑94 (MQ=60)

                                                                         TACGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGA                     >  SRR4302533.614379/1‑94 (MQ=60)

                                                                           CGTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATC                   <  SRR4302533.2133397/94‑1 (MQ=60)

                                                                            GTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCA                  >  SRR4302533.3235591/1‑94 (MQ=60)

                                                                            GTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCA                  >  SRR4302533.4722166/1‑94 (MQ=60)

                                                                            GTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCA                  <  SRR4302533.573251/94‑1 (MQ=60)

                                                                            GTTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCA                  <  SRR4302533.3465462/94‑1 (MQ=60)

                                                                             TTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAG                 <  SRR4302533.3632394/94‑1 (MQ=60)

                                                                             TTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAG                 <  SRR4302533.2742517/94‑1 (MQ=60)

                                                                             TTTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAG                 <  SRR4302533.4179341/94‑1 (MQ=60)

                                                                              TTCCACCAGCGCCAGACACCCTTCTGCCAGACCAGCGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGC                >  SRR4302533.6178800/1‑94 (MQ=60)

                                                                              TTCCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGC                <  SRR4302533.4729089/94‑1 (MQ=60)

                                                                                CCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCT              <  SRR4302533.2914726/94‑1 (MQ=60)

                                                                                CCACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCT              >  SRR4302533.5500785/1‑94 (MQ=60)

                                                                                 CACCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTT             >  SRR4302533.5377417/1‑94 (MQ=60)

                                                                                   CCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGC           >  SRR4302533.547631/1‑94 (MQ=60)

                                                                                   CCAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGC           <  SRR4302533.4973072/94‑1 (MQ=60)

                                                                                    CAGCGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCA          <  SRR4302533.5107779/94‑1 (MQ=60)

                                                                                       CGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGC       <  SRR4302533.937945/94‑1 (MQ=60)

                                                                                       CGCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGC       <  SRR4302533.2866675/94‑1 (MQ=60)

                                                                                        GCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCG      >  SRR4302533.4760256/1‑94 (MQ=60)

                                                                                        GCCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCG      <  SRR4302533.5022711/94‑1 (MQ=60)

                                                                                         CCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGT     >  SRR4302533.542043/1‑94 (MQ=60)

                                                                                         CCAGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGT     <  SRR4302533.3463030/94‑1 (MQ=60)

                                                                                           AGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTAC   <  SRR4302533.701489/94‑1 (MQ=60)

                                                                                           AGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTAC   <  SRR4302533.507922/94‑1 (MQ=60)

                                                                                           AGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTAC   >  SRR4302533.4542733/1‑94 (MQ=60)

                                                                                           AGACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTAC   >  SRR4302533.4916011/1‑94 (MQ=60)

                                                                                           AGACACCCTTCAGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTAC   >  SRR4302533.2532664/1‑94 (MQ=60)

                                                                                            GACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTACG  <  SRR4302533.2934432/94‑1 (MQ=60)

                                                                                            GACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTACG  <  SRR4302533.4795996/94‑1 (MQ=60)

                                                                                            GACACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTACG  <  SRR4302533.3807954/94‑1 (MQ=60)

AGTAAACCTG‑CATCATGGCGGTAATGCGCCGCCAGTAAATCAACATGAAATGCCGCTGGCTCCTGCGCCAGATACGTTTCCACCAGCGCCAGATACCCTTCTGCCAGACCAACGCTGCCACCGACCACCACGCACTGGCAATCAGTTGTGGCTTTAATATCAGCGATCAGCCTTGCAAGCGTACG  >  NC_000913/3367147‑3367331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`