Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,407,232 |
G→A |
A176T (GCG→ACG) |
prmA → |
PrmA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,407,232 | 0 | G | A | 100.0%
| 862.1
/ NA
| 234 | A176T (GCG→ACG) | prmA | PrmA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (128/106); total (128/106) |
Only 100 of 254 total aligned reads displayed.
TCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGC > NC_000913/3407142‑3407321
|
tctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCgcgacg > 1:4218641/1‑93 (MQ=255)
tctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCgcgacg > 1:5096989/1‑93 (MQ=255)
ctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGacgc < 1:2127286/93‑1 (MQ=255)
ctctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGacgc < 1:1379037/93‑1 (MQ=255)
ctGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGCAAAACAGTCATCGACTTTGGCTGTGGGTCCGGCATTCTGGCGATCGCGACGCTg > 1:1716924/1‑93 (MQ=255)
gtgCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGCTCCGGCATTCTGGCGATCGCGACGCTgca > 1:1063073/1‑91 (MQ=255)
gCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAAc > 2:307455/1‑93 (MQ=255)
cTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTg < 2:4902587/93‑1 (MQ=255)
tGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTgg < 1:4611675/93‑1 (MQ=255)
gCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTggg > 2:4265184/1‑93 (MQ=255)
aaTGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTg < 1:124495/93‑1 (MQ=255)
ggCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTgcag < 1:3712195/93‑1 (MQ=255)
gCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTgcagc < 1:1618722/93‑1 (MQ=255)
gCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTgcagc < 1:3808767/93‑1 (MQ=255)
gACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCaaaa > 1:6042394/1‑93 (MQ=255)
aCAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAg > 2:1014061/1‑93 (MQ=255)
aCAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAg > 1:1308032/1‑93 (MQ=255)
cAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGc > 2:93533/1‑93 (MQ=255)
aGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGcc > 1:6238471/1‑93 (MQ=255)
gCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCa < 2:1155704/93‑1 (MQ=255)
ccTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAt > 1:4783150/1‑93 (MQ=255)
cTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAtt > 1:5763770/1‑93 (MQ=255)
tCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTg > 1:1575368/1‑93 (MQ=255)
cGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTgg > 1:1887233/1‑93 (MQ=255)
gATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGt < 2:2875270/93‑1 (MQ=255)
aTTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTa > 1:2683404/1‑93 (MQ=255)
aTTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTa < 2:4045181/93‑1 (MQ=255)
tttAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTAt < 2:3860509/93‑1 (MQ=255)
ttAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTAtt > 1:1669222/1‑93 (MQ=255)
ttAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTAtt > 1:2106342/1‑93 (MQ=255)
ttAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTAtt < 1:3430362/93‑1 (MQ=255)
aCCGGTAAAACAGTTATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGat > 2:5756643/1‑93 (MQ=255)
aCCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGat > 2:4896751/1‑93 (MQ=255)
aCCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGat > 2:2632781/1‑93 (MQ=255)
aCCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGat < 1:5869842/93‑1 (MQ=255)
ccGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGata > 2:3633323/1‑93 (MQ=255)
cGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGatat < 2:2534951/93‑1 (MQ=255)
ggTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATc > 1:4388262/1‑93 (MQ=255)
gTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCg > 2:666561/1‑93 (MQ=255)
gTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCg < 1:1487000/93‑1 (MQ=255)
aaaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATc < 2:77556/93‑1 (MQ=255)
aaaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATc < 2:2194721/93‑1 (MQ=255)
aaaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATc > 1:3587498/1‑93 (MQ=255)
aaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATcc < 1:2923695/93‑1 (MQ=255)
aaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATcc < 1:3063856/93‑1 (MQ=255)
aaCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATcc < 1:3048757/93‑1 (MQ=255)
aCAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAGTGGTATTGATATCGATCCg > 1:3954018/1‑93 (MQ=255)
cAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGc < 2:1880143/93‑1 (MQ=255)
aGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCa > 1:2488944/1‑93 (MQ=255)
aGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCa > 1:3152566/1‑93 (MQ=255)
aGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCa > 1:5251529/1‑93 (MQ=255)
gTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAg > 1:501024/1‑93 (MQ=255)
gTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAg > 1:3373730/1‑93 (MQ=255)
cATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGc < 1:5293230/93‑1 (MQ=255)
cATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGc > 2:1826882/1‑93 (MQ=255)
aTCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCg > 1:178674/1‑93 (MQ=255)
tCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGa < 2:6203061/93‑1 (MQ=255)
gACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGAtt < 2:3177759/93‑1 (MQ=255)
aCTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTc > 2:1936048/1‑93 (MQ=255)
aCTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTc > 2:3938231/1‑93 (MQ=255)
aCTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTc > 2:3638642/1‑93 (MQ=255)
cTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCa < 1:3780298/93‑1 (MQ=255)
tttGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAg < 2:4420434/93‑1 (MQ=255)
ttGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAgg < 2:2310905/93‑1 (MQ=255)
ttGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAgg < 1:2542666/93‑1 (MQ=255)
tGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGc > 2:603513/1‑93 (MQ=255)
ggCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGcc < 2:596270/93‑1 (MQ=255)
ggCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGcc < 1:4549944/93‑1 (MQ=255)
tgtgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCCGGCGATTCAGGCCAGc > 2:5131062/1‑93 (MQ=255)
gtgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCCGGCCAGcc > 2:4393165/1‑93 (MQ=255)
gtgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGcc < 2:3321862/93‑1 (MQ=255)
tgGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGGcg > 1:911050/1‑93 (MQ=255)
ttCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGa < 1:1160588/93‑1 (MQ=255)
cGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATaa < 1:5615556/93‑1 (MQ=255)
ggCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAAc > 2:337805/1‑93 (MQ=255)
gCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACg > 2:5532493/1‑93 (MQ=255)
cATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGc > 2:1258820/1‑93 (MQ=255)
cATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGc < 2:5259542/93‑1 (MQ=255)
aTTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGcc > 1:790592/1‑93 (MQ=255)
ttCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCg > 2:3151882/1‑93 (MQ=255)
tCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGa > 2:5016567/1‑93 (MQ=255)
cTGGCGATCGCGAGGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGaa < 1:5482316/93‑1 (MQ=255)
cTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGaa < 2:3814558/93‑1 (MQ=255)
tGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAc > 2:5689418/1‑93 (MQ=255)
tGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAc > 2:5380473/1‑93 (MQ=255)
tGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAc > 2:1534473/1‑93 (MQ=255)
tGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAc > 2:6110970/1‑93 (MQ=255)
ggCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACg > 1:103205/1‑93 (MQ=255)
ggCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACg > 2:3034105/1‑93 (MQ=255)
cGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTa < 2:2095268/93‑1 (MQ=255)
gATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTaa > 2:2792253/1‑93 (MQ=255)
gATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTaa > 2:1456734/1‑93 (MQ=255)
gATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTaa > 1:2212529/1‑93 (MQ=255)
aTCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAt < 2:4298799/93‑1 (MQ=255)
aTCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAt > 1:1208870/1‑93 (MQ=255)
tCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATg < 1:4868666/93‑1 (MQ=255)
gcgcgACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCTATAACGCCGAACGTAATg < 2:1645049/92‑1 (MQ=255)
gcgacgCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGc > 2:3768224/1‑93 (MQ=255)
gcgacgCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGc > 2:2481610/1‑93 (MQ=255)
gcgacgCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGc > 2:1447220/1‑93 (MQ=255)
|
TCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGC > NC_000913/3407142‑3407321
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT > NC_000913/3407140‑3407325
|
CCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGAC > SRR4302533.1911231/1‑94 (MQ=60)
CCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGAC > SRR4302533.5683774/1‑94 (MQ=60)
CTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACG > SRR4302533.4244156/1‑94 (MQ=60)
CTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACG > SRR4302533.5127783/1‑94 (MQ=60)
TCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGC > SRR4302533.2047464/1‑94 (MQ=60)
CTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCT < SRR4302533.2140405/94‑1 (MQ=60)
CTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCT < SRR4302533.5472346/94‑1 (MQ=60)
CTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCT < SRR4302533.1387333/94‑1 (MQ=60)
CTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCT > SRR4302533.5865895/1‑94 (MQ=60)
TCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGCAAAACAGTCATCGACTTTGGCTGTGGGTCCGGCATTCTGGCGATCGCGACGCTG > SRR4302533.1727332/1‑94 (MQ=60)
TGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAA > SRR4302533.2442396/1‑94 (MQ=60)
TGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGCTCCGGCATTCTGGCGATCGCGACGCTGCA > SRR4302533.1069321/1‑94 (MQ=60)
GTGCCTGCATTGGCTAGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAA < SRR4302533.2196233/94‑1 (MQ=60)
TGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAAC < SRR4302533.343584/94‑1 (MQ=60)
TGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAAC < SRR4302533.1424703/94‑1 (MQ=60)
CTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGG > SRR4302533.1813189/1‑94 (MQ=60)
CTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGG < SRR4302533.1224854/94‑1 (MQ=60)
TGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGG < SRR4302533.1374912/94‑1 (MQ=60)
TGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGG < SRR4302533.4639616/94‑1 (MQ=60)
GCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGT < SRR4302533.3151078/94‑1 (MQ=60)
AATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGC < SRR4302533.112549/94‑1 (MQ=60)
AATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGC > SRR4302533.1725761/1‑94 (MQ=60)
AATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGC < SRR4302533.125276/94‑1 (MQ=60)
TGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAG < SRR4302533.3570731/94‑1 (MQ=60)
GGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGC > SRR4302533.3015271/1‑94 (MQ=60)
GGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGC < SRR4302533.3734991/94‑1 (MQ=60)
GCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCA < SRR4302533.1628528/94‑1 (MQ=60)
GCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCA < SRR4302533.2782662/94‑1 (MQ=60)
GCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCA < SRR4302533.3832067/94‑1 (MQ=60)
CTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAA > SRR4302533.3948784/1‑94 (MQ=60)
TCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAA > SRR4302533.3928438/1‑94 (MQ=60)
CGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAA > SRR4302533.6079004/1‑94 (MQ=60)
CGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAA < SRR4302533.1789329/94‑1 (MQ=60)
GACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAG > SRR4302533.1315886/1‑94 (MQ=60)
CAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCC > SRR4302533.6275824/1‑94 (MQ=60)
GCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAT < SRR4302533.2607642/94‑1 (MQ=60)
GCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAT > SRR4302533.4812127/1‑94 (MQ=60)
CCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATT > SRR4302533.5798556/1‑94 (MQ=60)
CCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATT < SRR4302533.4588997/94‑1 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG > SRR4302533.1185918/1‑94 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG > SRR4302533.1584854/1‑94 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG > SRR4302533.1229945/1‑94 (MQ=60)
CTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTG < SRR4302533.4293104/94‑1 (MQ=60)
TCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGG > SRR4302533.1898759/1‑94 (MQ=60)
TCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGG < SRR4302533.5938614/94‑1 (MQ=60)
CGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCCGAAACTGGGTGCAGCAAAAGCCATTGGT > SRR4302533.5350632/1‑94 (MQ=60)
GATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTA > SRR4302533.4627703/1‑94 (MQ=60)
GATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTA > SRR4302533.2699848/1‑94 (MQ=60)
TTTAGCCGGTAAAACAGTCATCGACTGTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATT < SRR4302533.3534517/94‑1 (MQ=60)
TTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATT > SRR4302533.2119331/1‑94 (MQ=60)
TTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATT > SRR4302533.1679306/1‑94 (MQ=60)
TTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTG < SRR4302533.3451554/94‑1 (MQ=60)
TAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGA < SRR4302533.5308832/94‑1 (MQ=60)
TAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGA < SRR4302533.1536202/94‑1 (MQ=60)
AACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGAT > SRR4302533.974734/1‑94 (MQ=60)
AACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGAT < SRR4302533.4929525/94‑1 (MQ=60)
ACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATA < SRR4302533.5905321/94‑1 (MQ=60)
CCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATAT < SRR4302533.748502/94‑1 (MQ=60)
CCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATAT < SRR4302533.1529168/94‑1 (MQ=60)
CGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATC < SRR4302533.4196762/94‑1 (MQ=60)
CGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATC > SRR4302533.4414755/1‑94 (MQ=60)
CGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATC < SRR4302533.3101444/94‑1 (MQ=60)
GTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGA < SRR4302533.1495970/94‑1 (MQ=60)
TAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGAT < SRR4302533.1067207/94‑1 (MQ=60)
AAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATC < SRR4302533.5248877/94‑1 (MQ=60)
AAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATC > SRR4302533.3609588/1‑94 (MQ=60)
AACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCG < SRR4302533.3082669/94‑1 (MQ=60)
AACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCG < SRR4302533.3067421/94‑1 (MQ=60)
AACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCG < SRR4302533.2941594/94‑1 (MQ=60)
AACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCG > SRR4302533.5784776/1‑94 (MQ=60)
AACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCAGTGGTATTGATATCGATCCG > SRR4302533.3978125/1‑94 (MQ=60)
CAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCA > SRR4302533.3344535/1‑94 (MQ=60)
CAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCA > SRR4302533.2504272/1‑94 (MQ=60)
CAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCA > SRR4302533.3171946/1‑94 (MQ=60)
CAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCA > SRR4302533.5283084/1‑94 (MQ=60)
AGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAG > SRR4302533.2125317/1‑94 (MQ=60)
AGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAG > SRR4302533.504005/1‑94 (MQ=60)
AGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAG < SRR4302533.3800126/94‑1 (MQ=60)
AGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAG > SRR4302533.1102992/1‑94 (MQ=60)
AGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAG > SRR4302533.3394565/1‑94 (MQ=60)
TCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGC < SRR4302533.3440576/94‑1 (MQ=60)
CATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCG > SRR4302533.5645650/1‑94 (MQ=60)
CATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCG < SRR4302533.5324916/94‑1 (MQ=60)
CATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCG > SRR4302533.1593224/1‑94 (MQ=60)
CATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCG > SRR4302533.179792/1‑94 (MQ=60)
CTCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGA < SRR4302533.867683/94‑1 (MQ=60)
ATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGA < SRR4302533.2566970/94‑1 (MQ=60)
ACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCA > SRR4302533.1788998/1‑94 (MQ=60)
CTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAG < SRR4302533.3803458/94‑1 (MQ=60)
CTTTGGCTGTGGTTCCGGCATTCTGGCGATCACGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAG > SRR4302533.4435841/1‑94 (MQ=60)
TTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGG > SRR4302533.1853542/1‑94 (MQ=60)
TTGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGC < SRR4302533.2558314/94‑1 (MQ=60)
TGGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCC > SRR4302533.692341/1‑94 (MQ=60)
GGCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCA < SRR4302533.4577534/94‑1 (MQ=60)
GCTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAG < SRR4302533.5914673/94‑1 (MQ=60)
CTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGC > SRR4302533.6250567/1‑94 (MQ=60)
CTGTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGC > SRR4302533.3078326/1‑94 (MQ=60)
GTGGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGGCG > SRR4302533.916393/1‑94 (MQ=60)
GGTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCG > SRR4302533.1675284/1‑94 (MQ=60)
GTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGA > SRR4302533.5096475/1‑94 (MQ=60)
GTTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGA > SRR4302533.1653714/1‑94 (MQ=60)
TTCCGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGAT < SRR4302533.1167553/94‑1 (MQ=60)
CGGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAAC < SRR4302533.5649501/94‑1 (MQ=60)
CGGCATTCTGGCGATCGCGACGCTGAAACGGGGTGCAGCAAAAGCCATTGGTATTGATATCGACCCGCAGGCGATTCAGCCCAGCCGCGATAAC < SRR4302533.5044619/94‑1 (MQ=60)
GGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACG > SRR4302533.4850415/1‑94 (MQ=60)
GGCATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACG < SRR4302533.5796601/94‑1 (MQ=60)
CATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCC > SRR4302533.4842981/1‑94 (MQ=60)
CATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCC > SRR4302533.795246/1‑94 (MQ=60)
CATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCC < SRR4302533.2132478/94‑1 (MQ=60)
CATTCTGGCGATCGCGACGCCGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCC > SRR4302533.2487115/1‑94 (MQ=60)
ATTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCG > SRR4302533.4413215/1‑94 (MQ=60)
TTCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGA > SRR4302533.2542782/1‑94 (MQ=60)
TCTGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAA > SRR4302533.5102712/1‑94 (MQ=60)
CTGGCGATCGCGAGGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAAC < SRR4302533.5515366/94‑1 (MQ=60)
TGGCTATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACG < SRR4302533.375559/94‑1 (MQ=60)
TGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACG > SRR4302533.4724101/1‑94 (MQ=60)
TGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACG > SRR4302533.103852/1‑94 (MQ=60)
TGGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGACAGCCGCGATAACGCCGAACG > SRR4302533.3666112/1‑94 (MQ=60)
GGCGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGT < SRR4302533.1278786/94‑1 (MQ=60)
CGATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAA > SRR4302533.2226179/1‑94 (MQ=60)
GATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAT < SRR4302533.3813464/94‑1 (MQ=60)
GATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAT > SRR4302533.1216131/1‑94 (MQ=60)
GATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAAT < SRR4302533.973330/94‑1 (MQ=60)
ATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATG < SRR4302533.1386324/94‑1 (MQ=60)
ATCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATG < SRR4302533.522785/94‑1 (MQ=60)
TCGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGG < SRR4302533.4898167/94‑1 (MQ=60)
CGCGACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGC < SRR4302533.3038286/94‑1 (MQ=60)
GACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTT > SRR4302533.1100385/1‑94 (MQ=60)
ACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT < SRR4302533.1614869/94‑1 (MQ=60)
ACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT < SRR4302533.3058708/94‑1 (MQ=60)
ACGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT < SRR4302533.3372547/94‑1 (MQ=60)
|
CCTCTCTGTGCCTGCAATGGCTCGACAGCCTCGATTTAACCGGTAAAACAGTCATCGACTTTGGCTGTGGTTCCGGCATTCTGGCGATCGCGGCGCTGAAACTGGGTGCAGCAAAAGCCATTGGTATTGATATCGATCCGCAGGCGATTCAGGCCAGCCGCGATAACGCCGAACGTAATGGCGTTT > NC_000913/3407140‑3407325
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
