Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,469,772 A→G G460G (GGT→GGC)  fusA ← GTP‑binding protein chain elongation factor EF‑G

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,469,7720AG100.0% 873.4 / NA 268G460G (GGT→GGC) fusAGTP‑binding protein chain elongation factor EF‑G
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (134/134);  total (134/134)

Only 100 of 274 total aligned reads displayed.

GTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATACCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCAT  >  NC_000913/3469682‑3469861
                                                                                          |                                                                                         
gTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGcc                                                                                         >  2:5461007/1‑93 (MQ=255)
  aaGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCcg                                                                                       >  1:5170666/1‑93 (MQ=255)
   aGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCcgc                                                                                      <  1:4455872/93‑1 (MQ=255)
   aGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCcgc                                                                                      <  2:3958007/93‑1 (MQ=255)
    gCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCcgcg                                                                                     >  2:4839212/1‑93 (MQ=255)
     cAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCga                                                                                    <  1:4022786/93‑1 (MQ=255)
      aaCCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCgat                                                                                   >  2:2130257/1‑93 (MQ=255)
      aaCCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCgat                                                                                   >  1:3188743/1‑93 (MQ=255)
      aaCCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCgat                                                                                   >  2:4885918/1‑93 (MQ=255)
       aCCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCgatg                                                                                  >  2:5200728/1‑93 (MQ=255)
        ccTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCgatga                                                                                 <  2:4115668/93‑1 (MQ=255)
         cTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCTCgatgat                                                                                >  1:6087579/1‑93 (MQ=255)
         cTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCgatgat                                                                                >  2:4617439/1‑93 (MQ=255)
         cTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCgatgat                                                                                <  2:3792419/93‑1 (MQ=255)
          tGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGatgatg                                                                               >  1:739327/1‑93 (MQ=255)
          tGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGatgatg                                                                               >  1:975439/1‑93 (MQ=255)
          tGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGatgatg                                                                               >  1:3785265/1‑93 (MQ=255)
          tGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGatgatg                                                                               <  2:4455147/93‑1 (MQ=255)
           gCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATgg                                                                              <  2:2422147/93‑1 (MQ=255)
           gCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATgg                                                                              <  1:1269779/93‑1 (MQ=255)
             ggTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTc                                                                            <  2:2734659/93‑1 (MQ=255)
              gTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCt                                                                           >  2:964783/1‑93 (MQ=255)
               tttACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTg                                                                          >  1:4903916/1‑93 (MQ=255)
               tttACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTg                                                                          <  1:3255504/93‑1 (MQ=255)
                 tACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGt                                                                        >  2:726079/1‑93 (MQ=255)
                   ccTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGCTGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATCGTCTGGGTa                                                                      >  2:5859921/1‑93 (MQ=255)
                   ccTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTa                                                                      <  2:2503548/93‑1 (MQ=255)
                     tACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGa                                                                    <  1:1043023/93‑1 (MQ=255)
                     tACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGa                                                                    >  2:1487158/1‑93 (MQ=255)
                     tACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGa                                                                    >  2:1950576/1‑93 (MQ=255)
                     tACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGa                                                                    <  2:5071104/93‑1 (MQ=255)
                     tACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGa                                                                    >  1:5484246/1‑93 (MQ=255)
                     tACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGa                                                                    >  2:108752/1‑93 (MQ=255)
                         ttCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGAttct                                                                >  2:3568354/1‑93 (MQ=255)
                           cGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGAttcttt                                                              <  1:5944084/93‑2 (MQ=255)
                           cGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGAttcttc                                                              <  1:5660545/93‑1 (MQ=255)
                           cGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGAttcttc                                                              <  2:5803464/93‑1 (MQ=255)
                            gCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCg                                                             >  1:2938495/1‑93 (MQ=255)
                            gCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCg                                                             >  2:4094217/1‑93 (MQ=255)
                             cTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGt                                                            <  1:5571177/93‑1 (MQ=255)
                             cTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGt                                                            <  2:1737562/93‑1 (MQ=255)
                              ttCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTc                                                           >  1:2469734/1‑93 (MQ=255)
                              ttCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTc                                                           >  2:6238765/1‑93 (MQ=255)
                               tCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCa                                                          <  2:1669682/93‑1 (MQ=255)
                                cAACGTTGAATTCATGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAg                                                         <  2:2851124/93‑1 (MQ=255)
                                 aaCGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGt                                                        <  2:1928780/93‑1 (MQ=255)
                                  aCGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTc                                                       >  1:52628/1‑93 (MQ=255)
                                    gTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCa                                                     <  1:4224446/93‑1 (MQ=255)
                                    gTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCa                                                     >  1:1859236/1‑93 (MQ=255)
                                     ttGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCAt                                                    >  1:2343357/1‑93 (MQ=255)
                                      tGAATTCACTCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCAtt                                                   <  2:3469938/93‑2 (MQ=255)
                                      tGAATTCACTCTACATACGGTCAACGATGATGTCGAGGTGCAGTGCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATa                                                   <  2:4781829/93‑1 (MQ=255)
                                      tGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATa                                                   <  1:6031255/93‑1 (MQ=255)
                                       gAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATac                                                  >  1:2779288/1‑93 (MQ=255)
                                        aaTTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATaca                                                 <  1:796523/93‑1 (MQ=255)
                                         aTTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATacac                                                <  1:2110875/93‑1 (MQ=255)
                                            cACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGa                                             >  1:3915481/1‑93 (MQ=255)
                                             aCGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGaa                                            <  2:207392/93‑1 (MQ=255)
                                             aCGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGaa                                            <  1:301530/93‑1 (MQ=255)
                                              cGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGaaa                                           <  1:3869558/93‑1 (MQ=255)
                                              cGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGaaa                                           <  2:403383/93‑1 (MQ=255)
                                               gCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAg                                          >  1:6236494/1‑93 (MQ=255)
                                               gCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAg                                          >  1:138763/1‑93 (MQ=255)
                                                 ttCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGAc                                        <  2:5572160/93‑1 (MQ=255)
                                                  tCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACg                                       >  1:4834660/1‑93 (MQ=255)
                                                  tCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACg                                       <  1:1335760/93‑1 (MQ=255)
                                                   cATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACgg                                      >  2:5025271/1‑93 (MQ=255)
                                                      aCGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGtc                                   <  2:5056036/93‑1 (MQ=255)
                                                       cGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGtct                                  >  1:584668/1‑93 (MQ=255)
                                                        ggTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGtctt                                 >  2:2683178/1‑93 (MQ=255)
                                                           cAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTcttctt                              <  2:3420474/93‑1 (MQ=255)
                                                            aaCGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCttt                             >  2:5887088/1‑93 (MQ=255)
                                                            aaCGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCttt                             <  2:4179869/93‑1 (MQ=255)
                                                            aaCGATGATGTCGAGGTGCAGTCCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCttt                             <  1:2641002/93‑1 (MQ=255)
                                                             aCGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTa                            >  2:4638000/1‑93 (MQ=255)
                                                             aCGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTa                            >  1:161815/1‑93 (MQ=255)
                                                             aCGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTa                            <  1:2012459/93‑1 (MQ=255)
                                                              cGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAg                           <  1:3781261/93‑1 (MQ=255)
                                                               gatgatGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGc                          <  1:1968134/93‑1 (MQ=255)
                                                                 tgatgTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCa                        >  2:5684775/1‑93 (MQ=255)
                                                                   atgTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGa                      <  2:435406/93‑1 (MQ=255)
                                                                   atgTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGa                      <  1:89477/93‑1 (MQ=255)
                                                                   atgTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGa                      <  1:1377181/93‑1 (MQ=255)
                                                                     gTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACg                    <  2:802968/93‑1 (MQ=255)
                                                                       cGAGGTCCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGc                  <  1:5766507/93‑1 (MQ=255)
                                                                        gAGGTGCAGTTCGCCCATGCCCGCGATGATGATCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGcc                 >  2:117776/1‑93 (MQ=255)
                                                                         aGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGccc                <  2:319463/93‑1 (MQ=255)
                                                                          ggTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCa               <  2:1276507/93‑1 (MQ=255)
                                                                            tGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCaga             <  1:4505279/93‑1 (MQ=255)
                                                                            ggCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCaga             <  1:4310427/92‑1 (MQ=255)
                                                                               aGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGcc          >  1:3315719/1‑93 (MQ=255)
                                                                               aGTTCGCCCATGCCCGAGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGcc          <  2:2827259/93‑1 (MQ=255)
                                                                                gTTCGTCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCa         <  1:1520391/93‑1 (MQ=255)
                                                                                gTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCa         <  1:3544760/93‑1 (MQ=255)
                                                                                gTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCa         >  1:6175841/1‑93 (MQ=255)
                                                                                     cccATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGAccc    <  2:2583153/93‑1 (MQ=255)
                                                                                     cccATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGAccc    >  1:1121055/1‑93 (MQ=255)
                                                                                      ccATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCa   >  2:1427849/1‑93 (MQ=255)
                                                                                       cATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCAt  <  1:1580033/93‑1 (MQ=255)
                                                                                       cATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCAt  >  2:611256/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATACCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCAT  >  NC_000913/3469682‑3469861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATACCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCATTTTT  >  NC_000913/3469680‑3469865
                                                                                            |                                                                                             
CGGTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGC                                                                                              >  SRR4302533.1635743/1‑94 (MQ=60)
CAGTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGC                                                                                              <  SRR4302533.2471100/94‑1 (MQ=60)
  GTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCC                                                                                            >  SRR4302533.3315622/1‑94 (MQ=60)
  GTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCC                                                                                            >  SRR4302533.3835858/1‑94 (MQ=60)
   TAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCG                                                                                           >  SRR4302533.5201871/1‑94 (MQ=60)
   TAAGCAACCTGCGGATTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCG                                                                                           >  SRR4302533.5811727/1‑94 (MQ=60)
     AGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCG                                                                                         <  SRR4302533.4482817/94‑1 (MQ=60)
     AGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCG                                                                                         <  SRR4302533.2115765/94‑1 (MQ=60)
     AGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCG                                                                                         >  SRR4302533.4870410/1‑94 (MQ=60)
     AGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCG                                                                                         >  SRR4302533.6164926/1‑94 (MQ=60)
       CAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGAT                                                                                       <  SRR4302533.4047280/94‑1 (MQ=60)
       CAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGAT                                                                                       >  SRR4302533.3208359/1‑94 (MQ=60)
        AACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATG                                                                                      <  SRR4302533.2834850/94‑1 (MQ=60)
         ACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGA                                                                                     >  SRR4302533.2715498/1‑94 (MQ=60)
         ACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGA                                                                                     >  SRR4302533.1672761/1‑94 (MQ=60)
          CCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCTCGATGAT                                                                                    >  SRR4302533.6124379/1‑94 (MQ=60)
          CCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGAT                                                                                    >  SRR4302533.1333083/1‑94 (MQ=60)
          CCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGAT                                                                                    <  SRR4302533.1347672/94‑1 (MQ=60)
          CCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGAT                                                                                    <  SRR4302533.6035779/94‑1 (MQ=60)
          CCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGAT                                                                                    >  SRR4302533.3805431/1‑94 (MQ=60)
           CTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATG                                                                                   >  SRR4302533.981162/1‑94 (MQ=60)
           CTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATG                                                                                   >  SRR4302533.3808441/1‑94 (MQ=60)
           CTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATG                                                                                   >  SRR4302533.652081/1‑94 (MQ=60)
           CTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATG                                                                                   >  SRR4302533.743680/1‑94 (MQ=60)
           CTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATG                                                                                   >  SRR4302533.887897/1‑94 (MQ=60)
           CTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATCATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATG                                                                                   >  SRR4302533.978993/1‑94 (MQ=60)
            TGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGG                                                                                  <  SRR4302533.4486895/94‑1 (MQ=60)
             GCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGT                                                                                 <  SRR4302533.1277378/94‑1 (MQ=60)
              CGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTC                                                                                >  SRR4302533.1167002/1‑94 (MQ=60)
               GGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCT                                                                               <  SRR4302533.3569762/94‑1 (MQ=60)
               GGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCT                                                                               >  SRR4302533.4347369/1‑94 (MQ=60)
                GTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTG                                                                              >  SRR4302533.2013545/1‑94 (MQ=60)
                GTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTG                                                                              >  SRR4302533.4933632/1‑94 (MQ=60)
                 TTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGG                                                                             <  SRR4302533.3275580/94‑1 (MQ=60)
                  TTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGT                                                                            >  SRR4302533.4989435/1‑94 (MQ=60)
                   TACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTT                                                                           <  SRR4302533.1427724/94‑1 (MQ=60)
                     CCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAG                                                                         >  SRR4302533.6075104/1‑94 (MQ=60)
                      CTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGA                                                                        >  SRR4302533.6258917/1‑94 (MQ=60)
                      CTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGA                                                                        >  SRR4302533.4776264/1‑94 (MQ=60)
                      CTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGA                                                                        >  SRR4302533.3913626/1‑94 (MQ=60)
                      CTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGA                                                                        >  SRR4302533.5517299/1‑94 (MQ=60)
                       TACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGAT                                                                       >  SRR4302533.1176502/1‑94 (MQ=60)
                       TACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGAT                                                                       <  SRR4302533.1049156/94‑1 (MQ=60)
                       TACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGAT                                                                       >  SRR4302533.5370016/1‑94 (MQ=60)
                        ACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATT                                                                      >  SRR4302533.1628748/1‑94 (MQ=60)
                         CGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTC                                                                     >  SRR4302533.4147485/1‑94 (MQ=60)
                         CGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTC                                                                     >  SRR4302533.225823/1‑94 (MQ=60)
                          GTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCT                                                                    >  SRR4302533.3514424/1‑94 (MQ=60)
                          GTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCT                                                                    >  SRR4302533.596429/1‑94 (MQ=60)
                           TTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTT                                                                   >  SRR4302533.2015807/1‑94 (MQ=60)
                            TCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTC                                                                  <  SRR4302533.4681518/94‑1 (MQ=60)
                            TCGCTGCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTC                                                                  <  SRR4302533.6030615/94‑1 (MQ=60)
                             CGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTTG                                                                 <  SRR4302533.5980033/94‑1 (MQ=60)
                             CGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCG                                                                 <  SRR4302533.5694747/94‑1 (MQ=60)
                             CGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCG                                                                 >  SRR4302533.2956450/1‑94 (MQ=60)
                             CGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCG                                                                 <  SRR4302533.5395556/94‑1 (MQ=60)
                              GCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGT                                                                <  SRR4302533.4881039/94‑1 (MQ=60)
                              GCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGT                                                                <  SRR4302533.817559/94‑1 (MQ=60)
                               CTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTC                                                               >  SRR4302533.2484969/1‑94 (MQ=60)
                               CTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTC                                                               <  SRR4302533.5604850/94‑1 (MQ=60)
                                TTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCA                                                              <  SRR4302533.3875767/94‑1 (MQ=60)
                                  CACCGTAGAAGTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTGCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGT                                                            <  SRR4302533.3638895/94‑1 (MQ=60)
                                  CAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGT                                                            <  SRR4302533.1582337/94‑1 (MQ=60)
                                   AACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTC                                                           <  SRR4302533.159720/94‑1 (MQ=60)
                                   AACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTC                                                           >  SRR4302533.3117987/1‑94 (MQ=60)
                                   AACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTC                                                           >  SRR4302533.52984/1‑94 (MQ=60)
                                   AACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTC                                                           >  SRR4302533.1393411/1‑94 (MQ=60)
                                    ACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCC                                                          >  SRR4302533.1328469/1‑94 (MQ=60)
                                     CGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTGGATTCTTCGTCAGTCCA                                                         >  SRR4302533.1510538/1‑94 (MQ=60)
                                     CGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCA                                                         >  SRR4302533.1870577/1‑94 (MQ=60)
                                      GTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCAT                                                        >  SRR4302533.2357862/1‑94 (MQ=60)
                                      GTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCAT                                                        <  SRR4302533.4249986/94‑1 (MQ=60)
                                        TGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATAC                                                      <  SRR4302533.5734878/94‑1 (MQ=60)
                                        TGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATAC                                                      >  SRR4302533.2796362/1‑94 (MQ=60)
                                        TGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATAC                                                      <  SRR4302533.6067806/94‑1 (MQ=60)
                                        TGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGGCTGGTTAGATTCTTCGTCAGTCCATAC                                                      >  SRR4302533.2796363/1‑94 (MQ=60)
                                          AATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACAC                                                    <  SRR4302533.801210/94‑1 (MQ=60)
                                           ATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACG                                                   <  SRR4302533.2123894/94‑1 (MQ=60)
                                           ATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCACCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACG                                                   >  SRR4302533.4454906/1‑94 (MQ=60)
                                            TTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGG                                                  >  SRR4302533.3287522/1‑94 (MQ=60)
                                             TCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGA                                                 >  SRR4302533.3939396/1‑94 (MQ=60)
                                               ACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAA                                               <  SRR4302533.303373/94‑1 (MQ=60)
                                               ACGCTTCATACGGACAACGATGAAGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGATAAATTCTTCGTCAGTCCATACACGGAAA                                               <  SRR4302533.6341975/94‑1 (MQ=60)
                                                CGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAG                                              >  SRR4302533.139645/1‑94 (MQ=60)
                                                CGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAG                                              <  SRR4302533.613145/94‑1 (MQ=60)
                                                CGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAG                                              >  SRR4302533.6273839/1‑94 (MQ=60)
                                                CGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAG                                              <  SRR4302533.3893182/94‑1 (MQ=60)
                                                CGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAG                                              <  SRR4302533.1091753/94‑1 (MQ=60)
                                                 GCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGA                                             <  SRR4302533.1387425/94‑1 (MQ=60)
                                                  CTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGAC                                            <  SRR4302533.2961281/94‑1 (MQ=60)
                                                   TTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACG                                           >  SRR4302533.4863962/1‑94 (MQ=60)
                                                    TCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGG                                          <  SRR4302533.1343777/94‑1 (MQ=60)
                                                    TCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGG                                          <  SRR4302533.3539782/94‑1 (MQ=60)
                                                     CAGACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGG                                         <  SRR4302533.592479/94‑1 (MQ=60)
                                                      ATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGT                                        >  SRR4302533.156553/1‑94 (MQ=60)
                                                      ATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGT                                        <  SRR4302533.4010304/94‑1 (MQ=60)
                                                       TACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTC                                       >  SRR4302533.5102910/1‑94 (MQ=60)
                                                        ACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCT                                      >  SRR4302533.588116/1‑94 (MQ=60)
                                                         CGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTT                                     <  SRR4302533.2490158/94‑1 (MQ=60)
                                                          GGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTC                                    <  SRR4302533.3118704/94‑1 (MQ=60)
                                                          GGTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTC                                    <  SRR4302533.2469628/94‑1 (MQ=60)
                                                           GTCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCT                                   <  SRR4302533.1939805/94‑1 (MQ=60)
                                                            TCAACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTT                                  >  SRR4302533.4322665/1‑94 (MQ=60)
                                                              AACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTA                                >  SRR4302533.162846/1‑94 (MQ=60)
                                                              AACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTA                                >  SRR4302533.5644377/1‑94 (MQ=60)
                                                              AACGATGATGTCGAGGTGCAGTCCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTA                                <  SRR4302533.2657232/94‑1 (MQ=60)
                                                               ACGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAG                               <  SRR4302533.2024856/94‑1 (MQ=60)
                                                                CGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGC                              <  SRR4302533.3804422/94‑1 (MQ=60)
                                                                CGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGC                              <  SRR4302533.2167223/94‑1 (MQ=60)
                                                                CGATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGC                              >  SRR4302533.5546954/1‑94 (MQ=60)
                                                                 GATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCC                             >  SRR4302533.787193/1‑94 (MQ=60)
                                                                 GATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCC                             <  SRR4302533.1980168/94‑1 (MQ=60)
                                                                 GATGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCC                             >  SRR4302533.3935801/1‑94 (MQ=60)
                                                                   TGATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAG                           <  SRR4302533.5663784/94‑1 (MQ=60)
                                                                     tcaTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGAC                         <  SRR4302533.4161655/91‑1 (MQ=60)
                                                                     ATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGAC                         <  SRR4302533.1385466/94‑1 (MQ=60)
                                                                     ATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGAC                         <  SRR4302533.625770/94‑1 (MQ=60)
                                                                     ATGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGAC                         <  SRR4302533.90044/94‑1 (MQ=60)
                                                                      TGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACG                        <  SRR4302533.2995613/94‑1 (MQ=60)
                                                                      TGTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACG                        <  SRR4302533.5533464/94‑1 (MQ=60)
                                                                       GTCGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGG                       <  SRR4302533.2520562/94‑1 (MQ=60)
                                                                         CGAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCC                     >  SRR4302533.3568718/1‑94 (MQ=60)
                                                                         CGAGGTCCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCC                     <  SRR4302533.5801320/94‑1 (MQ=60)
                                                                          GAGGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCC                    <  SRR4302533.937443/94‑1 (MQ=60)
                                                                            GGTGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAG                  <  SRR4302533.3275385/94‑1 (MQ=60)
                                                                              TGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGTCAGACGGCCCAGCG                >  SRR4302533.5811962/1‑94 (MQ=60)
                                                                              TGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAG                <  SRR4302533.4532569/94‑1 (MQ=60)
                                                                              GGCAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAG                <  SRR4302533.4336375/94‑1 (MQ=60)
                                                                                CAGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCC              >  SRR4302533.3336193/1‑94 (MQ=60)
                                                                                 AGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCA             >  SRR4302533.2396517/1‑94 (MQ=60)
                                                                                 AGTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCA             >  SRR4302533.6212947/1‑94 (MQ=60)
                                                                                  GTTCGTCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAG            <  SRR4302533.1529545/94‑1 (MQ=60)
                                                                                  GTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAG            <  SRR4302533.3566608/94‑1 (MQ=60)
                                                                                  GTTCGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAG            <  SRR4302533.4271964/94‑1 (MQ=60)
                                                                                     CGCGCATGCCCGCTATGATGGTCTGGTTAGATCCTTCTGCAGTCCATACACGGAAAGACGGCTCTTCTTTAGCCAGACGGCCCAGAGCCAGACC         <  SRR4302533.527378/94‑1 (MQ=60)
                                                                                     CGCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACC         >  SRR4302533.1965656/1‑94 (MQ=60)
                                                                                      GCCCATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCC        >  SRR4302533.1127706/1‑94 (MQ=60)
                                                                                         CATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCATT     <  SRR4302533.1589551/94‑1 (MQ=60)
                                                                                          ATGCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCATTT    >  SRR4302533.1236005/1‑94 (MQ=60)
                                                                                            GCCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCATTTTT  <  SRR4302533.5784092/94‑1 (MQ=60)
                                                                                            |                                                                                             
CGGTAAGCAACCTGCGGTTTACCTACGTTCGCTTCAACGTTGAATTCACGCTTCATACGGTCAACGATGATGTCGAGGTGCAGTTCGCCCATACCCGCGATGATGGTCTGGTTAGATTCTTCGTCAGTCCATACACGGAAAGACGGGTCTTCTTTAGCCAGACGGCCCAGAGCCAGACCCATTTTT  >  NC_000913/3469680‑3469865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑