Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,490,327	T→C	P41P (CCT→CCC)	yhfC →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,490,327	0	T	C	100.0%	865.1 / NA	266	P41P (CCT→CCC)	yhfC	putative transport
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (129/137); total (129/137)

Only 100 of 269 total aligned reads displayed.

GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC  >  NC_000913/3490237‑3490416

gATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGt                                                                                         >  2:6192529/1‑93 (MQ=255)

gATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGt                                                                                         >  2:2522124/1‑93 (MQ=255)

 aTTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGtt                                                                                        >  1:3070906/1‑93 (MQ=255)

  ttAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGttt                                                                                       <  1:1320390/93‑1 (MQ=255)

  ttAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGttt                                                                                       >  1:4382738/1‑93 (MQ=255)

   tAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTc                                                                                      >  2:5881652/1‑93 (MQ=255)

    aGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTcc                                                                                     >  2:2395333/1‑93 (MQ=255)

    aGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTcc                                                                                     <  1:3275144/93‑1 (MQ=255)

    aGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTcc                                                                                     >  1:3687824/1‑93 (MQ=255)

    aGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTcc                                                                                     <  2:5051602/93‑1 (MQ=255)

     gCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCa                                                                                    <  2:3740625/93‑1 (MQ=255)

     gCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCa                                                                                    <  1:3460267/93‑1 (MQ=255)

     gCTTCCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCa                                                                                    <  1:2270197/93‑1 (MQ=255)

       tttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGt                                                                                  <  2:5025192/93‑1 (MQ=255)

        ttCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTa                                                                                 >  1:487192/1‑93 (MQ=255)

          ctctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATg                                                                               <  1:931595/93‑1 (MQ=255)

           tctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGa                                                                              >  1:519484/1‑93 (MQ=255)

           tctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGa                                                                              <  2:5828303/93‑1 (MQ=255)

            ctcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAg                                                                             <  1:4350774/93‑1 (MQ=255)

             tcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGt                                                                            >  2:3873878/1‑93 (MQ=255)

             tcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGt                                                                            >  1:1053584/1‑93 (MQ=255)

             tcCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGt                                                                            <  2:5253740/93‑1 (MQ=255)

               cTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTaa                                                                          <  1:6007860/93‑1 (MQ=255)

                tACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAt                                                                         <  1:2063471/93‑1 (MQ=255)

                   gCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacc                                                                      <  1:5476450/93‑1 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     >  1:5447738/1‑93 (MQ=255)

                    cACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     <  1:6202415/93‑1 (MQ=255)

                    cACTGACTGGTACGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacct                                                                     <  1:4151998/93‑1 (MQ=255)

                     actgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATacctt                                                                    <  2:4163182/93‑1 (MQ=255)

                      ctgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttc                                                                   >  2:4631355/1‑93 (MQ=255)

                      ctgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttc                                                                   <  1:2796778/93‑1 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCTCGTTTCCAGTATGAGTAATaccttca                                                                  >  1:1681096/1‑93 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  <  1:5694583/93‑1 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  >  2:1038147/1‑93 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  >  1:1154366/1‑93 (MQ=255)

                       tgactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttca                                                                  >  2:334786/1‑93 (MQ=255)

                        gactgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcac                                                                 >  1:457250/1‑93 (MQ=255)

                          ctgGTGCGTTGGTTATTGTCACCGGGGTGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacct                                                               >  2:5730654/1‑93 (MQ=255)

                          ctgGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcacct                                                               <  1:3768339/93‑1 (MQ=255)

                            ggTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcaccttc                                                             <  2:2860119/93‑1 (MQ=255)

                            ggTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcaccttc                                                             <  2:1058146/93‑1 (MQ=255)

                            ggTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcaccttc                                                             <  1:1980744/93‑1 (MQ=255)

                            ggTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATaccttcaccttc                                                             >  2:5458976/1‑93 (MQ=255)

                             gTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTcc                                                            <  2:707858/93‑1 (MQ=255)

                                 gTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCaa                                                        <  2:1998072/93‑1 (MQ=255)

                                 gTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCaa                                                        <  2:5651491/93‑1 (MQ=255)

                                  ttGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAc                                                       >  2:1570870/1‑93 (MQ=255)

                                  ttGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAc                                                       >  1:4303551/1‑93 (MQ=255)

                                   tGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAcc                                                      >  2:3612238/1‑92 (MQ=255)

                                   tGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACg                                                      >  1:4669572/1‑93 (MQ=255)

                                    ggTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGc                                                     >  2:259676/1‑93 (MQ=255)

                                    ggTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGc                                                     <  2:2269580/93‑1 (MQ=255)

                                    gcttATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGc                                                     >  1:222590/3‑93 (MQ=255)

                                      ttATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCg                                                   <  1:4216364/93‑1 (MQ=255)

                                      ttATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCg                                                   <  1:2144839/93‑1 (MQ=255)

                                       tATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCgg                                                  <  2:5354740/93‑1 (MQ=255)

                                       tATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCgg                                                  <  1:5059517/93‑1 (MQ=255)

                                        aTTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCACCGCCGGc                                                 >  2:5803884/1‑93 (MQ=255)

                                         ttGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCa                                                <  2:4931404/93‑1 (MQ=255)

                                          tGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAt                                               >  1:5117399/1‑93 (MQ=255)

                                           gTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtt                                              >  2:3112697/1‑93 (MQ=255)

                                             cACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtttt                                            >  2:3936350/1‑93 (MQ=255)

                                             cACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAtttt                                            <  2:4780112/93‑1 (MQ=255)

                                              aCCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTa                                           >  2:146800/1‑93 (MQ=255)

                                              aCCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTa                                           >  2:3280131/1‑93 (MQ=255)

                                               ccGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTaa                                          >  2:1732514/1‑93 (MQ=255)

                                                 gggATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtc                                        <  1:1603507/93‑1 (MQ=255)

                                                 gggATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGCATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtc                                        <  1:4428823/93‑1 (MQ=255)

                                                  ggATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtct                                       <  1:2673872/93‑1 (MQ=255)

                                                   gATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAAtctc                                      <  1:2349360/93‑1 (MQ=255)

                                                      ggTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTAt                                   <  1:4691163/93‑1 (MQ=255)

                                                        tGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCt                                 >  1:4522311/1‑93 (MQ=255)

                                                        tGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCt                                 >  1:586314/1‑93 (MQ=255)

                                                          aTGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTc                               <  1:2522124/93‑1 (MQ=255)

                                                          aTGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTc                               >  1:1893940/1‑93 (MQ=255)

                                                           tGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTcc                              >  2:4201567/1‑93 (MQ=255)

                                                           tGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTcc                              <  1:4053870/93‑1 (MQ=255)

                                                             ggAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTc                            <  1:3670525/93‑1 (MQ=255)

                                                               aaaTATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCaa                          <  2:5987147/93‑1 (MQ=255)

                                                                aaTATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAc                         <  2:748411/93‑1 (MQ=255)

                                                                 atatCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACg                        >  2:1261638/1‑93 (MQ=255)

                                                                  tatCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTTCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGc                       <  1:738996/93‑1 (MQ=255)

                                                                  tatCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGc                       >  2:2158033/1‑93 (MQ=255)

                                                                      gCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTgg                   >  2:1792903/1‑93 (MQ=255)

                                                                       ccGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGc                  <  2:3859723/93‑1 (MQ=255)

                                                                        cGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCt                 >  2:4442566/1‑93 (MQ=255)

                                                                         gATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTg                >  1:1024889/1‑93 (MQ=255)

                                                                           ttattTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCGACGCCTGGCTGAt              <  2:1488943/93‑1 (MQ=255)

                                                                             attTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATgg            <  2:5136319/93‑1 (MQ=255)

                                                                              tttCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGa           >  2:909955/1‑93 (MQ=255)

                                                                               ttCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGaa          >  1:757706/1‑93 (MQ=255)

                                                                               ttCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGaa          >  1:3118273/1‑93 (MQ=255)

                                                                                 cAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAt        <  1:2019918/93‑1 (MQ=255)

                                                                                 cAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAt        <  2:1655077/93‑1 (MQ=255)

                                                                                  aaTCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATc       <  1:6162268/93‑1 (MQ=255)

                                                                                    tCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGt     <  2:3070906/93‑1 (MQ=255)

                                                                                    tCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGt     >  1:5268399/1‑93 (MQ=255)

                                                                                     cTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTc    <  2:6280799/93‑1 (MQ=255)

                                                                                      tGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTcc   <  1:1408148/93‑1 (MQ=255)

                                                                                       gCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTccc  >  2:3382874/1‑93 (MQ=255)

GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC  >  NC_000913/3490237‑3490416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTTG  >  NC_000913/3490234‑3490420

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCC                                                                                               >  SRR4302533.5432977/1‑94 (MQ=60)

   GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTT                                                                                            >  SRR4302533.3089760/1‑94 (MQ=60)

   GATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTT                                                                                            >  SRR4302533.7491/1‑94 (MQ=60)

    ATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTT                                                                                           >  SRR4302533.1051059/1‑94 (MQ=60)

    ATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTT                                                                                           >  SRR4302533.2549865/1‑94 (MQ=60)

    ATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTT                                                                                           >  SRR4302533.4409198/1‑94 (MQ=60)

     TTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTC                                                                                          <  SRR4302533.1328317/94‑1 (MQ=60)

      TAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCC                                                                                         <  SRR4302533.3697278/94‑1 (MQ=60)

      TAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCC                                                                                         >  SRR4302533.3710487/1‑94 (MQ=60)

       AGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCA                                                                                        <  SRR4302533.3295362/94‑1 (MQ=60)

       AGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCA                                                                                        <  SRR4302533.5095221/94‑1 (MQ=60)

        GCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAG                                                                                       <  SRR4302533.3481626/94‑1 (MQ=60)

        GCTTCCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAG                                                                                       <  SRR4302533.2284241/94‑1 (MQ=60)

         CTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGT                                                                                      >  SRR4302533.3128146/1‑94 (MQ=60)

         CTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGT                                                                                      <  SRR4302533.1556787/94‑1 (MQ=60)

          TTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTA                                                                                     >  SRR4302533.490108/1‑94 (MQ=60)

           TTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAT                                                                                    <  SRR4302533.2022709/94‑1 (MQ=60)

            TCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATG                                                                                   >  SRR4302533.2356109/1‑94 (MQ=60)

             CTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGA                                                                                  >  SRR4302533.522571/1‑94 (MQ=60)

             CTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGA                                                                                  <  SRR4302533.3102456/94‑1 (MQ=60)

             CTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGA                                                                                  <  SRR4302533.937064/94‑1 (MQ=60)

              TCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAG                                                                                 <  SRR4302533.2474845/94‑1 (MQ=60)

              TCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAG                                                                                 <  SRR4302533.4987909/94‑1 (MQ=60)

               CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                                <  SRR4302533.4377028/94‑1 (MQ=60)

               CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                                >  SRR4302533.1059790/1‑94 (MQ=60)

               CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGT                                                                                >  SRR4302533.6037571/1‑94 (MQ=60)

               CTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCACGTTTCCAGTATGAGT                                                                                >  SRR4302533.5483073/1‑94 (MQ=60)

                TCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTA                                                                               <  SRR4302533.1077001/94‑1 (MQ=60)

                 CCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                              <  SRR4302533.5445997/94‑1 (MQ=60)

                 CCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                              >  SRR4302533.1108602/1‑94 (MQ=60)

                 CCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                              >  SRR4302533.4357901/1‑94 (MQ=60)

                 CCTACGCACTGACTGGTGCGTTGGCTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAA                                                                              >  SRR4302533.5180519/1‑94 (MQ=60)

                  CTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAT                                                                             <  SRR4302533.6044261/94‑1 (MQ=60)

                  CTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAT                                                                             <  SRR4302533.4247845/94‑1 (MQ=60)

                  CTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAAT                                                                             <  SRR4302533.2659769/94‑1 (MQ=60)

                   TACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATA                                                                            <  SRR4302533.2076191/94‑1 (MQ=60)

                      GCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCT                                                                         <  SRR4302533.3578722/94‑1 (MQ=60)

                      GCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCT                                                                         >  SRR4302533.5480557/1‑94 (MQ=60)

                      GCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCT                                                                         <  SRR4302533.5509463/94‑1 (MQ=60)

                       CACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTT                                                                        >  SRR4302533.2108348/1‑94 (MQ=60)

                       CACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTT                                                                        <  SRR4302533.6239614/94‑1 (MQ=60)

                       CACTGACTGGTACGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTT                                                                        <  SRR4302533.4177154/94‑1 (MQ=60)

                        ACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTC                                                                       <  SRR4302533.967965/94‑1 (MQ=60)

                         CTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCTCGTTTCCAGTATGAGTAATACCTTCA                                                                      >  SRR4302533.1691279/1‑94 (MQ=60)

                         CTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCA                                                                      >  SRR4302533.2720049/1‑94 (MQ=60)

                         CTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCA                                                                      <  SRR4302533.2813978/94‑1 (MQ=60)

                         CTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCA                                                                      >  SRR4302533.1161286/1‑94 (MQ=60)

                          TGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCAC                                                                     >  SRR4302533.459985/1‑94 (MQ=60)

                          TGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCAC                                                                     <  SRR4302533.5728973/94‑1 (MQ=60)

                          TGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCAC                                                                     <  SRR4302533.5734371/94‑1 (MQ=60)

                             CTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTT                                                                  <  SRR4302533.3791446/94‑1 (MQ=60)

                              TGGTGCATTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTC                                                                 <  SRR4302533.4249832/94‑1 (MQ=60)

                               GGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCC                                                                <  SRR4302533.1992869/94‑1 (MQ=60)

                                GTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCT                                                               <  SRR4302533.460606/94‑1 (MQ=60)

                                  GCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCA                                                             >  SRR4302533.4560019/1‑94 (MQ=60)

                                   CGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAA                                                            <  SRR4302533.326416/94‑1 (MQ=60)

                                   CGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAA                                                            <  SRR4302533.4976566/94‑1 (MQ=60)

                                    GTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAC                                                           >  SRR4302533.2400325/1‑94 (MQ=60)

                                    GTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAAC                                                           >  SRR4302533.4329442/1‑94 (MQ=60)

                                    GTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGGTTCCAGTATGAGTAATACCTTCACCTTCCTCAAC                                                           >  SRR4302533.3782643/1‑94 (MQ=60)

                                     TTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACG                                                          >  SRR4302533.4697870/1‑94 (MQ=60)

                                      TGCTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGC                                                         >  SRR4302533.223981/1‑94 (MQ=60)

                                        GTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCG                                                       <  SRR4302533.2256697/94‑1 (MQ=60)

                                        GTTATTGTCACCGGGATGGTGATGAGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTAGGAGTAATACCTTCTCCTTCCTCAACGCCG                                                       <  SRR4302533.5651772/94‑1 (MQ=60)

                                         TTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGG                                                      <  SRR4302533.2158051/94‑1 (MQ=60)

                                         TTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGG                                                      <  SRR4302533.4241869/94‑1 (MQ=60)

                                          TATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGC                                                     <  SRR4302533.5090091/94‑1 (MQ=60)

                                            TTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCAT                                                   >  SRR4302533.5148323/1‑94 (MQ=60)

                                                CACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTA                                               <  SRR4302533.1206774/94‑1 (MQ=60)

                                                   CGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATC                                            <  SRR4302533.892356/94‑1 (MQ=60)

                                                    GGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCT                                           <  SRR4302533.1613215/94‑1 (MQ=60)

                                                    GGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGCATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCT                                           <  SRR4302533.4455597/94‑1 (MQ=60)

                                                     GGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTC                                          >  SRR4302533.4531481/1‑94 (MQ=60)

                                                     GGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTC                                          <  SRR4302533.2690273/94‑1 (MQ=60)

                                                      GATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCT                                         <  SRR4302533.5786906/94‑1 (MQ=60)

                                                      GATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCT                                         <  SRR4302533.2363894/94‑1 (MQ=60)

                                                         GGTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATC                                      <  SRR4302533.4719598/94‑1 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     <  SRR4302533.4184763/94‑1 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     <  SRR4302533.2307756/94‑1 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     >  SRR4302533.589774/1‑94 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     >  SRR4302533.4549689/1‑94 (MQ=60)

                                                          GTGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGCAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCT                                     <  SRR4302533.4459987/94‑1 (MQ=60)

                                                           TGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTT                                    >  SRR4302533.5925511/1‑94 (MQ=60)

                                                           TGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTT                                    >  SRR4302533.4028730/1‑94 (MQ=60)

                                                           TGATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTT                                    >  SRR4302533.3444648/1‑94 (MQ=60)

                                                            GATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTC                                   <  SRR4302533.4389361/94‑1 (MQ=60)

                                                            GATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTC                                   >  SRR4302533.4361841/1‑94 (MQ=60)

                                                            GATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTC                                   >  SRR4302533.1905502/1‑94 (MQ=60)

                                                             ATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCC                                  <  SRR4302533.2537665/94‑1 (MQ=60)

                                                             ATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCC                                  <  SRR4302533.4654922/94‑1 (MQ=60)

                                                             ATGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCC                                  >  SRR4302533.4439157/1‑94 (MQ=60)

                                                              TGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCT                                 <  SRR4302533.4078556/94‑1 (MQ=60)

                                                              TGGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCT                                 >  SRR4302533.4711314/1‑94 (MQ=60)

                                                               GGGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTC                                >  SRR4302533.4202143/1‑94 (MQ=60)

                                                                GGAAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCA                               <  SRR4302533.3693085/94‑1 (MQ=60)

                                                                  AAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAC                             >  SRR4302533.1925444/1‑94 (MQ=60)

                                                                  AAATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAAC                             <  SRR4302533.5234393/94‑1 (MQ=60)

                                                                   AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                            >  SRR4302533.2893653/1‑94 (MQ=60)

                                                                   AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                            >  SRR4302533.5267847/1‑94 (MQ=60)

                                                                   AATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACG                            >  SRR4302533.445142/1‑94 (MQ=60)

                                                                    ATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGC                           >  SRR4302533.2155227/1‑94 (MQ=60)

                                                                    ATATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGC                           >  SRR4302533.3360873/1‑94 (MQ=60)

                                                                     TATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTTCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCC                          <  SRR4302533.743349/94‑1 (MQ=60)

                                                                     TATCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCC                          <  SRR4302533.2989295/94‑1 (MQ=60)

                                                                       TCGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTG                        <  SRR4302533.6270667/94‑1 (MQ=60)

                                                                        CGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGG                       <  SRR4302533.4703136/94‑1 (MQ=60)

                                                                        CGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGG                       <  SRR4302533.1930511/94‑1 (MQ=60)

                                                                        CGCCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGG                       >  SRR4302533.5620695/1‑94 (MQ=60)

                                                                          CCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCT                     >  SRR4302533.5127235/1‑94 (MQ=60)

                                                                          CCGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGACTGGCT                     >  SRR4302533.4177006/1‑94 (MQ=60)

                                                                           CGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTG                    >  SRR4302533.1030914/1‑94 (MQ=60)

                                                                           CGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTG                    >  SRR4302533.643669/1‑94 (MQ=60)

                                                                           CGATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTG                    >  SRR4302533.1230580/1‑94 (MQ=60)

                                                                            GATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGA                   >  SRR4302533.1627329/1‑94 (MQ=60)

                                                                            GATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGA                   <  SRR4302533.6230104/94‑1 (MQ=60)

                                                                            GATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGA                   >  SRR4302533.4809766/1‑94 (MQ=60)

                                                                             ATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGAT                  >  SRR4302533.2173499/1‑94 (MQ=60)

                                                                             ATTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGAT                  <  SRR4302533.1714310/94‑1 (MQ=60)

                                                                              TTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATG                 <  SRR4302533.3586930/94‑1 (MQ=60)

                                                                              TTATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATG                 <  SRR4302533.99770/94‑1 (MQ=60)

                                                                               TATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGG                <  SRR4302533.2010971/94‑1 (MQ=60)

                                                                               TATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGG                <  SRR4302533.1519284/94‑1 (MQ=60)

                                                                                ATTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGA               >  SRR4302533.3723906/1‑94 (MQ=60)

                                                                                 TTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAA              >  SRR4302533.3137446/1‑94 (MQ=60)

                                                                                 TTTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAA              >  SRR4302533.762167/1‑94 (MQ=60)

                                                                                  TTCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAA             <  SRR4302533.3899394/94‑1 (MQ=60)

                                                                                   TCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAT            >  SRR4302533.1363050/1‑94 (MQ=60)

                                                                                   TCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAT            >  SRR4302533.773179/1‑94 (MQ=60)

                                                                                   TCAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAAT            <  SRR4302533.6086511/94‑1 (MQ=60)

                                                                                    CAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATC           >  SRR4302533.6205757/1‑94 (MQ=60)

                                                                                    CAATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATC           <  SRR4302533.2032359/94‑1 (MQ=60)

                                                                                     AATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCG          <  SRR4302533.6199321/94‑1 (MQ=60)

                                                                                     AATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCG          >  SRR4302533.5447727/1‑94 (MQ=60)

                                                                                      ATCTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGT         >  SRR4302533.5300002/1‑94 (MQ=60)

                                                                                        CTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCC       <  SRR4302533.2198965/94‑1 (MQ=60)

                                                                                        CTGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCC       >  SRR4302533.1640754/1‑94 (MQ=60)

                                                                                         TGCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCC      <  SRR4302533.1416661/94‑1 (MQ=60)

                                                                                          GCCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCG     <  SRR4302533.2035122/94‑1 (MQ=60)

                                                                                           CCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGT    >  SRR4302533.6329068/1‑94 (MQ=60)

                                                                                           CCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGT    >  SRR4302533.1271086/1‑94 (MQ=60)

                                                                                           CCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGT    >  SRR4302533.892472/1‑94 (MQ=60)

                                                                                           CCCGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGT    >  SRR4302533.4877132/1‑94 (MQ=60)

                                                                                             CGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTTG  <  SRR4302533.1195281/94‑1 (MQ=60)

ATGGATTAGCTTTCTCTCCTACGCACTGACTGGTGCGTTGGTTATTGTCACCGGGATGGTGATGGGAAATATCGCCGATTATTTCAATCTGCCTGTTTCCAGTATGAGTAATACCTTCACCTTCCTCAACGCCGGCATTTTAATCTCTATCTTCCTCAACGCCTGGCTGATGGAAATCGTCCCGTTG  >  NC_000913/3490234‑3490420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`