Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,500,309	Δ1 bp	coding (333/363 nt)	b3372 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,500,308	0	C	.	100.0%	1055.4 / NA	228	coding (332/363 nt)	b3372	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (118/110); total (118/110)

Only 100 of 247 total aligned reads displayed.

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAA  >  NC_000913/3500216‑3500396

 gATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcg                                                                                         <  2:1818368/93‑2 (MQ=255)

 gATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcg                                                                                         <  1:1650614/93‑2 (MQ=255)

 gATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcg                                                                                         >  2:4951914/1‑92 (MQ=255)

 gATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcg                                                                                         >  1:2095781/1‑92 (MQ=255)

  aTGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcgg                                                                                        >  1:4755995/1‑91 (MQ=255)

   tGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCAGGTTATACGCTGATTTccgcggc                                                                                       >  2:3028628/1‑90 (MQ=255)

    gAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTccgcggcc                                                                                      >  2:6173019/1‑89 (MQ=255)

      aCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCa                                                                                   >  2:4838397/1‑93 (MQ=255)

      aCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCa                                                                                   >  2:1872742/1‑93 (MQ=255)

      aCATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCa                                                                                   >  2:1606961/1‑93 (MQ=255)

       cATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAc                                                                                  >  1:2472826/1‑93 (MQ=255)

       cATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAc                                                                                  <  1:2529271/93‑1 (MQ=255)

        atatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcg                                                                                 <  1:2376551/93‑1 (MQ=255)

        atatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcg                                                                                 >  2:818412/1‑93 (MQ=255)

        atatGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcg                                                                                 >  2:5366225/1‑93 (MQ=255)

        atatGCGGCGCGAAAGCCTCGACATGATCAAGCTGCCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAcg                                                                                 <  1:4826627/93‑1 (MQ=255)

           tGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCgg                                                                              >  1:3905790/1‑93 (MQ=255)

               tCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTa                                                                          >  1:554777/1‑93 (MQ=255)

               tCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTa                                                                          <  1:332067/93‑1 (MQ=255)

                 gcgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtc                                                                        >  1:2564596/1‑93 (MQ=255)

                  cgAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtct                                                                       <  2:1275104/93‑1 (MQ=255)

                   gAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAtctc                                                                      >  1:1431899/1‑93 (MQ=255)

                       gCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGc                                                                  <  1:6121989/93‑1 (MQ=255)

                        ccTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGcc                                                                 <  1:5069460/93‑1 (MQ=255)

                         cTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCa                                                                <  1:2008052/93‑1 (MQ=255)

                           cGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCAcc                                                              <  1:1744022/93‑1 (MQ=255)

                            gACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCt                                                             >  2:2628456/1‑93 (MQ=255)

                            gACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCt                                                             <  2:5121124/93‑1 (MQ=255)

                             aCATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTa                                                            >  2:3296926/1‑93 (MQ=255)

                             aCATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTa                                                            >  2:642765/1‑93 (MQ=255)

                             aCATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTa                                                            >  1:5202506/1‑93 (MQ=255)

                                tGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATg                                                         <  2:5579434/93‑1 (MQ=255)

                                tGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATg                                                         >  2:5053621/1‑93 (MQ=255)

                                tGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATg                                                         <  1:1212404/93‑1 (MQ=255)

                                 gATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGt                                                        >  1:4255799/1‑93 (MQ=255)

                                   tCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTa                                                      >  1:1103717/1‑93 (MQ=255)

                                   tCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTa                                                      <  1:3717582/93‑1 (MQ=255)

                                   tCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTa                                                      >  1:5983536/1‑93 (MQ=255)

                                    cAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAt                                                     >  2:5213978/1‑93 (MQ=255)

                                    cAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAt                                                     >  1:492315/1‑93 (MQ=255)

                                     aaGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATc                                                    >  1:4034326/1‑93 (MQ=255)

                                     aaGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATc                                                    <  2:4338355/93‑1 (MQ=255)

                                     aaGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATc                                                    >  1:1115824/1‑93 (MQ=255)

                                       gCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTg                                                  <  1:3872037/93‑1 (MQ=255)

                                        cTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTgg                                                 <  1:5327266/93‑1 (MQ=255)

                                        cTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTgg                                                 <  1:3037464/93‑1 (MQ=255)

                                         tGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTggg                                                >  2:1920804/1‑93 (MQ=255)

                                         tGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTggg                                                >  2:4197533/1‑93 (MQ=255)

                                         tGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTggg                                                <  2:4655325/93‑1 (MQ=255)

                                         tGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTggg                                                <  1:5406820/93‑1 (MQ=255)

                                          ggCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTgggg                                               >  2:2909474/1‑93 (MQ=255)

                                           gCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGa                                              <  2:4699999/93‑1 (MQ=255)

                                           gCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGa                                              <  2:507252/93‑1 (MQ=255)

                                           gCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGa                                              <  1:3634348/93‑1 (MQ=255)

                                            cGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAc                                             <  2:573322/93‑1 (MQ=255)

                                              aTGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACgg                                           >  1:5947747/1‑93 (MQ=255)

                                              aTGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACgg                                           >  1:5236893/1‑93 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                          <  1:747632/93‑1 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                          >  2:3847124/1‑93 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                          <  2:1989074/93‑1 (MQ=255)

                                               tGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGc                                          >  1:575139/1‑93 (MQ=255)

                                                 gATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTg                                        >  1:5537011/1‑93 (MQ=255)

                                                   tatGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGc                                      >  1:5770604/1‑93 (MQ=255)

                                                     tGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCag                                    >  2:2303463/1‑93 (MQ=255)

                                                      ggCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCaga                                   <  1:4593364/93‑1 (MQ=255)

                                                       gCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCagag                                  >  2:4512859/1‑93 (MQ=255)

                                                          aaaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAc                               >  1:1404831/1‑93 (MQ=255)

                                                          aaaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAc                               <  1:3273388/93‑1 (MQ=255)

                                                           aaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAcc                              <  2:4257893/93‑1 (MQ=255)

                                                           aaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAcc                              >  2:2809064/1‑93 (MQ=255)

                                                           aaGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAcc                              >  2:3926541/1‑93 (MQ=255)

                                                            agagATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCt                             >  1:623614/1‑93 (MQ=255)

                                                             gagaTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTa                            >  2:4025270/1‑93 (MQ=255)

                                                             gagaTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTa                            <  1:291047/93‑1 (MQ=255)

                                                               gaTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAg                          >  2:553762/1‑93 (MQ=255)

                                                               gaTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAg                          <  1:3828944/93‑1 (MQ=255)

                                                                aTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGc                         <  2:2649101/93‑1 (MQ=255)

                                                                aTGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGc                         <  2:2410468/93‑1 (MQ=255)

                                                                  gAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGa                       <  2:3090406/93‑1 (MQ=255)

                                                                     cgcgGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACt                    <  2:854242/93‑1 (MQ=255)

                                                                       cgGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgt                  >  1:2672536/1‑93 (MQ=255)

                                                                        gggTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtg                 <  1:179855/93‑1 (MQ=255)

                                                                         ggTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtgt                >  1:909218/1‑93 (MQ=255)

                                                                          gTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGTCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACtgtgtg               >  1:439840/1‑93 (MQ=255)

                                                                           ttATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa              <  1:3593455/93‑1 (MQ=255)

                                                                           ttATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGa              <  2:344939/93‑1 (MQ=255)

                                                                             ataCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGt            >  1:3162118/1‑93 (MQ=255)

                                                                              taCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGCACTGTGTGAGTa           >  2:4636050/1‑93 (MQ=255)

                                                                              taCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTa           >  2:2173446/1‑93 (MQ=255)

                                                                              taCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTa           >  2:312646/1‑93 (MQ=255)

                                                                              taCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTa           >  2:5824475/1‑93 (MQ=255)

                                                                               aCGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAc          <  1:992992/93‑1 (MQ=255)

                                                                                cGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcg         >  2:544116/1‑93 (MQ=255)

                                                                                cGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcg         >  1:2866249/1‑93 (MQ=255)

                                                                                cGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcg         >  2:3708713/1‑93 (MQ=255)

                                                                                  cTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTAcgcg       >  1:1837262/1‑93 (MQ=255)

                                                                                    gATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGa     >  2:5882088/1‑93 (MQ=255)

                                                                                     aTTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGaa    <  2:1286014/93‑1 (MQ=255)

                                                                                     aTTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGaa    >  1:318667/1‑93 (MQ=255)

                                                                                       ttCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGaaaa  <  2:5949892/93‑1 (MQ=255)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAA  >  NC_000913/3500216‑3500396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCGG  >  NC_000913/3500216‑3500402

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCG                                                                                               >  SRR4302533.3739582/1‑94 (MQ=60)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCG                                                                                               <  SRR4302533.3616258/94‑1 (MQ=60)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCG                                                                                               >  SRR4302533.2565387/1‑94 (MQ=60)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCG                                                                                               <  SRR4302533.3310508/94‑1 (MQ=60)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCG                                                                                               >  SRR4302533.2108686/1‑94 (MQ=60)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCG                                                                                               <  SRR4302533.146878/94‑1 (MQ=60)

 GATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGG                                                                                              >  SRR4302533.6016317/1‑94 (MQ=60)

 GATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGG                                                                                              >  SRR4302533.1387270/1‑94 (MQ=60)

 GATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGG                                                                                              >  SRR4302533.4784858/1‑94 (MQ=60)

 GATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCGG                                                                                              <  SRR4302533.1660613/94‑1 (MQ=60)

     AACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCA                                                                                         >  SRR4302533.3257590/1‑94 (MQ=60)

      ACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAC                                                                                        >  SRR4302533.2488074/1‑94 (MQ=60)

      ACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAC                                                                                        <  SRR4302533.1774851/94‑1 (MQ=60)

      ACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCAC                                                                                        <  SRR4302533.3192048/94‑1 (MQ=60)

       CATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACG                                                                                       <  SRR4302533.2544843/94‑1 (MQ=60)

        ATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGC                                                                                      <  SRR4302533.2391256/94‑1 (MQ=60)

        ATATGCGGCGCGAAAGCCTCGACATGATCAAGCTGCCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGC                                                                                      <  SRR4302533.4855875/94‑1 (MQ=60)

          ATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGG                                                                                    >  SRR4302533.3929646/1‑94 (MQ=60)

          ATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGG                                                                                    <  SRR4302533.4160233/94‑1 (MQ=60)

              GTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTA                                                                                >  SRR4302533.1862418/1‑94 (MQ=60)

              GTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTA                                                                                >  SRR4302533.558065/1‑94 (MQ=60)

               TCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTAT                                                                               <  SRR4302533.334098/94‑1 (MQ=60)

                CGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATC                                                                              >  SRR4302533.2580378/1‑94 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            >  SRR4302533.1440550/1‑94 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            >  SRR4302533.1186130/1‑94 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            >  SRR4302533.3340335/1‑94 (MQ=60)

                  CGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTC                                                                            <  SRR4302533.2127458/94‑1 (MQ=60)

                     AAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACG                                                                         >  SRR4302533.4947672/1‑94 (MQ=60)

                       GCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCC                                                                       <  SRR4302533.6158902/94‑1 (MQ=60)

                        CCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCA                                                                      <  SRR4302533.2664455/94‑1 (MQ=60)

                        CCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCA                                                                      >  SRR4302533.2852872/1‑94 (MQ=60)

                        CCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCA                                                                      >  SRR4302533.291468/1‑94 (MQ=60)

                        CCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCA                                                                      <  SRR4302533.5100070/94‑1 (MQ=60)

                         CTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCAC                                                                     <  SRR4302533.2020422/94‑1 (MQ=60)

                          TCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACC                                                                    <  SRR4302533.4263781/94‑1 (MQ=60)

                           CGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCT                                                                   <  SRR4302533.1754626/94‑1 (MQ=60)

                            GACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTA                                                                  >  SRR4302533.5233859/1‑94 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                >  SRR4302533.3849979/1‑94 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                >  SRR4302533.813099/1‑94 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                >  SRR4302533.2994090/1‑94 (MQ=60)

                              CATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAAT                                                                >  SRR4302533.3493700/1‑94 (MQ=60)

                               ATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATG                                                               <  SRR4302533.3909357/94‑1 (MQ=60)

                                TGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGT                                                              >  SRR4302533.4281458/1‑94 (MQ=60)

                                TGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGT                                                              <  SRR4302533.1219696/94‑1 (MQ=60)

                                TGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGT                                                              >  SRR4302533.4962380/1‑94 (MQ=60)

                                TGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGT                                                              <  SRR4302533.5417524/94‑1 (MQ=60)

                                TGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGT                                                              >  SRR4302533.149948/1‑94 (MQ=60)

                                 GATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTT                                                             <  SRR4302533.4922968/94‑1 (MQ=60)

                                  ATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTA                                                            >  SRR4302533.1110251/1‑94 (MQ=60)

                                  ATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTA                                                            >  SRR4302533.6019772/1‑94 (MQ=60)

                                   TCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAT                                                           >  SRR4302533.495257/1‑94 (MQ=60)

                                   TCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAT                                                           <  SRR4302533.2537888/94‑1 (MQ=60)

                                   TCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTAT                                                           <  SRR4302533.3740401/94‑1 (MQ=60)

                                    CAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATC                                                          >  SRR4302533.4058883/1‑94 (MQ=60)

                                    CAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATC                                                          >  SRR4302533.5488214/1‑94 (MQ=60)

                                    CAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATC                                                          >  SRR4302533.1122445/1‑94 (MQ=60)

                                     AAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCT                                                         >  SRR4302533.1281755/1‑94 (MQ=60)

                                     AAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCT                                                         >  SRR4302533.5279732/1‑94 (MQ=60)

                                       GCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGG                                                       <  SRR4302533.3895670/94‑1 (MQ=60)

                                       GCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGG                                                       <  SRR4302533.712258/94‑1 (MQ=60)

                                       GCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGG                                                       <  SRR4302533.5236891/94‑1 (MQ=60)

                                       GCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGG                                                       <  SRR4302533.4634754/94‑1 (MQ=60)

                                        CTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGG                                                      <  SRR4302533.5359191/94‑1 (MQ=60)

                                        CTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGG                                                      >  SRR4302533.1119507/1‑94 (MQ=60)

                                        CTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGG                                                      <  SRR4302533.3056049/94‑1 (MQ=60)

                                         TGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGG                                                     <  SRR4302533.5439311/94‑1 (MQ=60)

                                          GGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGA                                                    <  SRR4302533.4557147/94‑1 (MQ=60)

                                           GCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAC                                                   <  SRR4302533.3656702/94‑1 (MQ=60)

                                           GCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGAC                                                   <  SRR4302533.2076896/94‑1 (MQ=60)

                                            CGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACG                                                  <  SRR4302533.5221350/94‑1 (MQ=60)

                                            CGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACG                                                  >  SRR4302533.1888333/1‑94 (MQ=60)

                                             GATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑TGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGG                                                 >  SRR4302533.4588635/1‑94 (MQ=60)

                                             GATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGG                                                 >  SRR4302533.5983722/1‑94 (MQ=60)

                                             GATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGG                                                 >  SRR4302533.5268380/1‑94 (MQ=60)

                                              ATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGC                                                <  SRR4302533.741785/94‑1 (MQ=60)

                                              ATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGC                                                >  SRR4302533.578532/1‑94 (MQ=60)

                                               TGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCT                                               <  SRR4302533.4312402/94‑1 (MQ=60)

                                               TGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCT                                               <  SRR4302533.752034/94‑1 (MQ=60)

                                                GGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTG                                              >  SRR4302533.5570447/1‑94 (MQ=60)

                                                  ATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGC                                            >  SRR4302533.5805445/1‑94 (MQ=60)

                                                    ATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAG                                          >  SRR4302533.3903077/1‑94 (MQ=60)

                                                     TGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGA                                         <  SRR4302533.384902/94‑1 (MQ=60)

                                                      GGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAG                                        <  SRR4302533.948923/94‑1 (MQ=60)

                                                      GGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAG                                        <  SRR4302533.4621189/94‑1 (MQ=60)

                                                      GGCAAAAGAGATGAACGCGGGTGATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAG                                        <  SRR4302533.5620517/94‑1 (MQ=60)

                                                       GCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGA                                       <  SRR4302533.3168258/94‑1 (MQ=60)

                                                         AAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAC                                     <  SRR4302533.5339445/94‑1 (MQ=60)

                                                         AAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAC                                     <  SRR4302533.1426661/94‑1 (MQ=60)

                                                         AAAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAAC                                     >  SRR4302533.1413331/1‑94 (MQ=60)

                                                          AAAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACC                                    <  SRR4302533.3293594/94‑1 (MQ=60)

                                                           AAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCT                                   >  SRR4302533.627276/1‑94 (MQ=60)

                                                           AAGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCT                                   >  SRR4302533.5475101/1‑94 (MQ=60)

                                                            AGAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTA                                  >  SRR4302533.5804649/1‑94 (MQ=60)

                                                             GAGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAA                                 <  SRR4302533.292817/94‑1 (MQ=60)

                                                              AGATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAG                                >  SRR4302533.3854569/1‑94 (MQ=60)

                                                               GATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGC                               <  SRR4302533.3852355/94‑1 (MQ=60)

                                                                ATGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCG                              <  SRR4302533.5779411/94‑1 (MQ=60)

                                                                 TGAACGCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGA                             >  SRR4302533.3633314/1‑94 (MQ=60)

                                                                      GCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGT                        >  SRR4302533.237742/1‑94 (MQ=60)

                                                                      GCGGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGT                        >  SRR4302533.2688931/1‑94 (MQ=60)

                                                                        GGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGT                      <  SRR4302533.5933914/94‑1 (MQ=60)

                                                                        GGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGT                      >  SRR4302533.914551/1‑94 (MQ=60)

                                                                        GGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGT                      <  SRR4302533.180979/94‑1 (MQ=60)

                                                                        GGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGT                      <  SRR4302533.1812228/94‑1 (MQ=60)

                                                                        GGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGT                      <  SRR4302533.318290/94‑1 (MQ=60)

                                                                        GGGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGT                      <  SRR4302533.557267/94‑1 (MQ=60)

                                                                         GGTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGTCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTG                     >  SRR4302533.442464/1‑94 (MQ=60)

                                                                          GTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGA                    <  SRR4302533.4848761/94‑1 (MQ=60)

                                                                          GTTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGA                    <  SRR4302533.5911175/94‑1 (MQ=60)

                                                                           TTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAG                   <  SRR4302533.3615567/94‑1 (MQ=60)

                                                                           TTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAG                   <  SRR4302533.1707140/94‑1 (MQ=60)

                                                                           TTATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCAGGCAGAGAACCTAAGCGAACTGTGTGAG                   >  SRR4302533.6095895/1‑94 (MQ=60)

                                                                            TATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGT                  >  SRR4302533.3181579/1‑94 (MQ=60)

                                                                             ATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGGACTGTGTGAGTA                 >  SRR4302533.180383/1‑94 (MQ=60)

                                                                             ATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTA                 >  SRR4302533.2408430/1‑94 (MQ=60)

                                                                             ATACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTA                 >  SRR4302533.2652925/1‑94 (MQ=60)

                                                                               ACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACG               <  SRR4302533.6048551/94‑1 (MQ=60)

                                                                               ACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACG               <  SRR4302533.998797/94‑1 (MQ=60)

                                                                               ACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACG               <  SRR4302533.6228767/94‑1 (MQ=60)

                                                                               ACGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACG               >  SRR4302533.2883885/1‑94 (MQ=60)

                                                                                CGCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGC              >  SRR4302533.4004015/1‑94 (MQ=60)

                                                                                 GCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCG             <  SRR4302533.3026950/94‑1 (MQ=60)

                                                                                 GCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCG             >  SRR4302533.1848468/1‑94 (MQ=60)

                                                                                 GCTGATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCG             >  SRR4302533.5228888/1‑94 (MQ=60)

                                                                                    GATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAA          >  SRR4302533.320621/1‑94 (MQ=60)

                                                                                    GATTTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGCACGCGGAA          >  SRR4302533.253189/1‑94 (MQ=60)

                                                                                       TTCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCAGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAAA       >  SRR4302533.3398702/1‑94 (MQ=60)

                                                                                        TCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACA      <  SRR4302533.3714901/94‑1 (MQ=60)

                                                                                        TCCG‑CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACA      >  SRR4302533.4513285/1‑94 (MQ=60)

                                                                                           cgCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATC    <  SRR4302533.5544899/92‑1 (MQ=60)

                                                                                           cgCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATC    <  SRR4302533.5091042/92‑1 (MQ=60)

                                                                                            GCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCG   <  SRR4302533.406203/94‑1 (MQ=60)

                                                                                             CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCGG  <  SRR4302533.417467/94‑1 (MQ=60)

                                                                                             CGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCGG  >  SRR4302533.5129237/1‑94 (MQ=60)

CGATGAACATATGCGTCGCGAAAGCCTCGACATGATCAAGCTGGCGATGGATATGGCAAAAGAGATGAACGCGGGTTATACGCTGATTTCCGCCGGCCCACGCGGGCTATCTCACGCCACCTAATGTTATCTGGGGACGGCTGGCAGAGAACCTAAGCGAACTGTGTGAGTACGCGGAAAACATCGG  >  NC_000913/3500216‑3500402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`