Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,586,561 |
T→C |
N97S (AAC→AGC) |
ugpC ← |
ATP‑binding component of sn‑glycerol 3‑phosphate transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,586,561 | 0 | T | C | 99.6%
| 818.4
/ ‑4.8
| 257 | N97S (AAC→AGC) | ugpC | ATP‑binding component of sn‑glycerol 3‑phosphate transport system |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (133/123); total (133/124) |
| Fisher's exact test for biased strand distribution p-value = 4.82e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.45e-01 |
Only 100 of 272 total aligned reads displayed.
GCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGC > NC_000913/3586472‑3586650
|
gcTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGctct > 2:270420/1‑93 (MQ=255)
gcTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGctct > 1:5894558/1‑93 (MQ=255)
tCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTgg > 1:1080147/1‑93 (MQ=255)
tCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTgg < 2:4799869/93‑1 (MQ=255)
ggCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGaa > 1:3822184/1‑93 (MQ=255)
ggCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTATCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGaa < 2:6115114/93‑1 (MQ=255)
aaTTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAacac < 2:654338/93‑1 (MQ=255)
aaTTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAacac > 2:4970866/1‑93 (MQ=255)
aaTTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAacac > 2:5497870/1‑93 (MQ=255)
aTTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACAcc > 1:1448134/1‑93 (MQ=255)
tttGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCa > 2:2577069/1‑93 (MQ=255)
tttGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCa > 1:5798091/1‑93 (MQ=255)
ttGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCAt < 2:3290877/93‑1 (MQ=255)
ttGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCAt < 2:3121798/93‑1 (MQ=255)
ctgctTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGc < 2:2997629/93‑1 (MQ=255)
ctgctTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGc < 1:4513113/93‑1 (MQ=255)
gctTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTGTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCaa > 1:3388094/1‑93 (MQ=255)
gctTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCaa < 2:2476118/93‑1 (MQ=255)
ctTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAAt > 2:3433700/1‑93 (MQ=255)
ctTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAAt > 1:4933850/1‑93 (MQ=255)
ttGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATc > 2:5885200/1‑93 (MQ=255)
ttGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATc > 1:241052/1‑93 (MQ=255)
tGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATcc < 1:4041398/93‑1 (MQ=255)
gCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATccc < 1:5502708/93‑1 (MQ=255)
gCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATccc > 1:4349399/1‑93 (MQ=255)
cccATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCcg < 2:4318812/93‑1 (MQ=255)
ccATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCcgc > 1:4242121/1‑93 (MQ=255)
ccATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCcgc > 2:6297571/1‑93 (MQ=255)
ccATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCcgc > 1:1667956/1‑93 (MQ=255)
tGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGAt < 1:1324059/93‑1 (MQ=255)
tGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGAt > 2:2190013/1‑93 (MQ=255)
tGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGAt > 2:6254268/1‑93 (MQ=255)
ccGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCt > 1:692262/1‑93 (MQ=255)
gcgAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCttt < 2:163117/93‑1 (MQ=255)
gcgAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCttt < 2:1344886/93‑1 (MQ=255)
gcgAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCttt > 2:4877526/1‑93 (MQ=255)
cgAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCtttt > 2:3679797/1‑93 (MQ=255)
aaTTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTgg > 2:3971010/1‑93 (MQ=255)
ttttCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCt > 2:237617/1‑93 (MQ=255)
tCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTcct > 1:4421365/1‑92 (MQ=255)
tCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCa < 2:3346789/93‑1 (MQ=255)
aGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCAtt < 2:4614446/93‑1 (MQ=255)
cccACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAg > 2:683092/1‑93 (MQ=255)
cccACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAg < 2:2120295/93‑1 (MQ=255)
cccACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAg > 2:5169620/1‑93 (MQ=255)
cccACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAg > 1:6307603/1‑93 (MQ=255)
ccACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACCCCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGt < 1:2638816/93‑1 (MQ=255)
ccACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGt > 1:6184867/1‑93 (MQ=255)
cACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTc < 1:5171443/93‑1 (MQ=255)
cACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTc > 1:5280370/1‑93 (MQ=255)
cACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTc < 1:1892459/93‑1 (MQ=255)
aCGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCa < 2:4216214/93‑1 (MQ=255)
aCGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCa < 1:1783220/93‑1 (MQ=255)
gCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCAcg < 1:4815309/93‑1 (MQ=255)
ccATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCAcgc > 1:6282920/1‑93 (MQ=255)
ccATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCAcgc < 1:4629527/93‑1 (MQ=255)
ccATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCAcgc < 1:2831518/93‑1 (MQ=255)
ccATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCAcgc < 2:2829428/93‑1 (MQ=255)
cATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCAcgcg > 1:5047889/1‑93 (MQ=255)
aTGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACgcgc > 1:3013666/1‑93 (MQ=255)
aTGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACccgc > 1:4612255/1‑93 (MQ=255)
tGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCt < 2:3016686/93‑1 (MQ=255)
tGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCt > 2:902210/1‑93 (MQ=255)
tGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCt > 2:1193745/1‑93 (MQ=255)
gTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTg < 2:566247/93‑1 (MQ=255)
gTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTg < 1:3538345/93‑1 (MQ=255)
ttttCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTgg < 1:5619043/93‑1 (MQ=255)
tttCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGt < 2:2305851/93‑1 (MQ=255)
tttCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGt > 2:185320/1‑93 (MQ=255)
tttCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGt > 2:5984653/1‑93 (MQ=255)
tttCCTCGACACTCATATTGCGATAAAGCCCGTAACTCCGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGt < 1:1418682/93‑1 (MQ=255)
ttcttcGAGACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTc > 2:6162203/1‑93 (MQ=255)
ttcttcGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTc < 1:522424/93‑1 (MQ=255)
tcttcGACGCTCATATGCAGATAAAGCGCGTAGCTCTGGAACGCCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCg < 2:2278239/93‑1 (MQ=255)
gACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGAt < 1:1025705/93‑1 (MQ=255)
gACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGAt > 2:5836054/1‑93 (MQ=255)
cacTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATcc > 1:2545942/1‑93 (MQ=255)
acTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCa > 2:3231953/1‑93 (MQ=255)
acTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCa < 2:613129/93‑1 (MQ=255)
tCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGa > 2:509581/1‑93 (MQ=255)
cATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGat > 1:6012991/1‑93 (MQ=255)
tatGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGatat > 1:870928/1‑93 (MQ=255)
atGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATc > 2:1769748/1‑93 (MQ=255)
tGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCg > 2:1941101/1‑93 (MQ=255)
gCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGc < 1:4233848/93‑1 (MQ=255)
gCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGc > 1:4071590/1‑93 (MQ=255)
ggATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCt > 2:383041/1‑93 (MQ=255)
ggATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCt > 2:5773986/1‑93 (MQ=255)
gATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCtt > 2:1268027/1‑93 (MQ=255)
aTAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTc < 1:2880404/93‑1 (MQ=255)
tAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCt < 2:2447960/93‑1 (MQ=255)
tAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCt > 1:1819344/1‑93 (MQ=255)
tAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTCGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCt < 2:4349399/93‑1 (MQ=255)
tAAAGCGCATAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTACATTTCAGTCACGAGCTGGTCGTTGATCCAGATATCGCCTTCt < 1:3062532/93‑1 (MQ=255)
aaaGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTg > 2:1736520/1‑93 (MQ=255)
aaaGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTg > 2:744422/1‑93 (MQ=255)
aaGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGt < 1:3035774/93‑1 (MQ=255)
gcgcGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCa > 1:3445103/1‑93 (MQ=255)
gcgcGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCa < 2:5379737/93‑1 (MQ=255)
tAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGc > 2:5279558/1‑93 (MQ=255)
|
GCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGC > NC_000913/3586472‑3586650
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCA > NC_000913/3586471‑3586654
|
CGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCT > SRR4302533.5930159/1‑94 (MQ=60)
GCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTG > SRR4302533.4986728/1‑94 (MQ=60)
CTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGG > SRR4302533.1086516/1‑94 (MQ=60)
CTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGG > SRR4302533.426085/1‑94 (MQ=60)
TCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGA > SRR4302533.5203633/1‑94 (MQ=60)
CGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAA < SRR4302533.5464673/94‑1 (MQ=60)
CGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAA > SRR4302533.3845553/1‑94 (MQ=60)
CAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACAC > SRR4302533.5735346/1‑94 (MQ=60)
CAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACAC > SRR4302533.3066845/1‑94 (MQ=60)
AATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACC > SRR4302533.885149/1‑94 (MQ=60)
AATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACC > SRR4302533.4904854/1‑94 (MQ=60)
AATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACC > SRR4302533.1456871/1‑94 (MQ=60)
AATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACC > SRR4302533.1428572/1‑94 (MQ=60)
AATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACC > SRR4302533.724280/1‑94 (MQ=60)
ATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCA > SRR4302533.5238809/1‑94 (MQ=60)
ATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCA > SRR4302533.5833120/1‑94 (MQ=60)
TTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATC > SRR4302533.2961936/1‑94 (MQ=60)
TGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCG < SRR4302533.4862762/94‑1 (MQ=60)
TGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCG < SRR4302533.2413753/94‑1 (MQ=60)
TGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCG < SRR4302533.5876920/94‑1 (MQ=60)
GCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGC > SRR4302533.6254526/1‑94 (MQ=60)
CTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCA < SRR4302533.4540445/94‑1 (MQ=60)
TGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTGTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAA > SRR4302533.3409014/1‑94 (MQ=60)
TCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAAT < SRR4302533.5753692/94‑1 (MQ=60)
GCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAAT > SRR4302533.4963727/1‑94 (MQ=60)
CTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATC > SRR4302533.242549/1‑94 (MQ=60)
TGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCC < SRR4302533.4065994/94‑1 (MQ=60)
TGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCC > SRR4302533.4375621/1‑94 (MQ=60)
GCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCG > SRR4302533.1701744/1‑94 (MQ=60)
GCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCG < SRR4302533.5535910/94‑1 (MQ=60)
CCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGC > SRR4302533.4267736/1‑94 (MQ=60)
CCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGC > SRR4302533.1678032/1‑94 (MQ=60)
CCCATGCCGCGAATTTTCAGACCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGC > SRR4302533.2614459/1‑94 (MQ=60)
CCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCG > SRR4302533.4669812/1‑94 (MQ=60)
TGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATC > SRR4302533.6229734/1‑94 (MQ=60)
TGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATC < SRR4302533.1332000/94‑1 (MQ=60)
GCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCT > SRR4302533.440135/1‑94 (MQ=60)
GCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCT < SRR4302533.5617080/94‑1 (MQ=60)
GCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCT > SRR4302533.696351/1‑94 (MQ=60)
CCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTT > SRR4302533.6340808/1‑94 (MQ=60)
GAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGG > SRR4302533.2975998/1‑94 (MQ=60)
AATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGC < SRR4302533.3082424/94‑1 (MQ=60)
AATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGC < SRR4302533.3082423/94‑1 (MQ=60)
AATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGC < SRR4302533.4250973/94‑1 (MQ=60)
ATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCT > SRR4302533.1313870/1‑94 (MQ=60)
ATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCT > SRR4302533.2523207/1‑94 (MQ=60)
ATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCT > SRR4302533.4003580/1‑94 (MQ=60)
TTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTC > SRR4302533.646079/1‑94 (MQ=60)
TTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTC > SRR4302533.1797175/1‑94 (MQ=60)
TTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCT > SRR4302533.4448095/1‑94 (MQ=60)
AGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTT < SRR4302533.103543/94‑1 (MQ=60)
AGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTT > SRR4302533.3052668/1‑94 (MQ=60)
CCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCA < SRR4302533.5296147/94‑1 (MQ=60)
CCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAG > SRR4302533.499095/1‑94 (MQ=60)
CCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAG < SRR4302533.1394650/94‑1 (MQ=60)
CCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAG < SRR4302533.3440721/94‑1 (MQ=60)
CCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAG > SRR4302533.6345424/1‑94 (MQ=60)
CCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGT > SRR4302533.6221999/1‑94 (MQ=60)
CCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACCCCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTC < SRR4302533.2655037/94‑1 (MQ=60)
CCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTC > SRR4302533.1410341/1‑94 (MQ=60)
CCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTC > SRR4302533.5312012/1‑94 (MQ=60)
CCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTC > SRR4302533.447581/1‑94 (MQ=60)
CACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCA < SRR4302533.5202650/94‑1 (MQ=60)
CACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCA < SRR4302533.1904013/94‑1 (MQ=60)
ACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCAC < SRR4302533.1794067/94‑1 (MQ=60)
CGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACG > SRR4302533.4337924/1‑94 (MQ=60)
CGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACG < SRR4302533.4261550/94‑1 (MQ=60)
GCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGC < SRR4302533.4844495/94‑1 (MQ=60)
GCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGC > SRR4302533.6320414/1‑94 (MQ=60)
CCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCG > SRR4302533.5078425/1‑94 (MQ=60)
CCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCG > SRR4302533.3563899/1‑94 (MQ=60)
CCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCG > SRR4302533.2885488/1‑94 (MQ=60)
CCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCG < SRR4302533.2848940/94‑1 (MQ=60)
CCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCG < SRR4302533.2721711/94‑1 (MQ=60)
CCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCG < SRR4302533.3861058/94‑1 (MQ=60)
CCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCG < SRR4302533.4657588/94‑1 (MQ=60)
CATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGC > SRR4302533.3032100/1‑94 (MQ=60)
CATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACCCGC > SRR4302533.4640198/1‑94 (MQ=60)
ATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCT > SRR4302533.4763675/1‑94 (MQ=60)
TGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTG < SRR4302533.1495248/94‑1 (MQ=60)
TGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTG < SRR4302533.1801108/94‑1 (MQ=60)
GTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGG < SRR4302533.3560151/94‑1 (MQ=60)
TTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGT < SRR4302533.5271214/94‑1 (MQ=60)
TTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGT < SRR4302533.5653005/94‑1 (MQ=60)
TTTCCTCGACACTCATATTGCGATAAAGCCCGTAACTCCGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTC < SRR4302533.1427264/94‑1 (MQ=60)
TTCTTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCG < SRR4302533.525524/94‑1 (MQ=60)
TTCGACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTG < SRR4302533.1485916/94‑1 (MQ=60)
GACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATC > SRR4302533.3525247/1‑94 (MQ=60)
GACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATC < SRR4302533.1031732/94‑1 (MQ=60)
GACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATC < SRR4302533.4585067/94‑1 (MQ=60)
ACACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCC > SRR4302533.2561606/1‑94 (MQ=60)
CACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCA < SRR4302533.4652384/94‑1 (MQ=60)
ACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAG < SRR4302533.795567/94‑1 (MQ=60)
ACTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAG < SRR4302533.4579992/94‑1 (MQ=60)
CTCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGA > SRR4302533.585467/1‑94 (MQ=60)
TCATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGAT > SRR4302533.6049420/1‑94 (MQ=60)
CATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATA > SRR4302533.1931115/1‑94 (MQ=60)
CATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATA > SRR4302533.2855602/1‑94 (MQ=60)
ATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATAT > SRR4302533.876040/1‑94 (MQ=60)
ATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATAT > SRR4302533.4313614/1‑94 (MQ=60)
ATATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATAT < SRR4302533.2429604/94‑1 (MQ=60)
ATGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCG < SRR4302533.1709078/94‑1 (MQ=60)
TGCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGC > SRR4302533.4096377/1‑94 (MQ=60)
GCGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCC < SRR4302533.4259432/94‑1 (MQ=60)
CGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCT > SRR4302533.6116161/1‑94 (MQ=60)
CGGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCT < SRR4302533.356965/94‑1 (MQ=60)
TGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTT < SRR4302533.6083816/94‑1 (MQ=60)
GGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTT < SRR4302533.4189966/94‑1 (MQ=60)
GGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTT < SRR4302533.349836/94‑1 (MQ=60)
GGATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTT > SRR4302533.1170632/1‑94 (MQ=60)
ATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCT < SRR4302533.2898125/94‑1 (MQ=60)
ATAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCT > SRR4302533.1830459/1‑94 (MQ=60)
TAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTG < SRR4302533.3081332/94‑1 (MQ=60)
TAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTG < SRR4302533.635395/94‑1 (MQ=60)
TAAAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTG < SRR4302533.4493890/94‑1 (MQ=60)
TAAAGCGCATAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTACATTTCAGTCACGAGCTGGTCGTTGATCCAGATATCGCCTTCTG < SRR4302533.3081333/94‑1 (MQ=60)
AAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTC < SRR4302533.5990518/94‑1 (MQ=60)
AAGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTC < SRR4302533.3054350/94‑1 (MQ=60)
AGCGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCA > SRR4302533.3466377/1‑94 (MQ=60)
CGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACC < SRR4302533.5608946/94‑1 (MQ=60)
CGCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACC > SRR4302533.2847573/1‑94 (MQ=60)
GCGTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGCCACCC < SRR4302533.5144799/94‑1 (MQ=60)
GCGTAGCTCTGCAACACCATCGCAAGCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCC < SRR4302533.4084570/94‑1 (MQ=60)
GTAGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGC > SRR4302533.1867997/1‑94 (MQ=60)
AGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTC < SRR4302533.2656504/94‑1 (MQ=60)
AGCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTC < SRR4302533.2613059/94‑1 (MQ=60)
GCTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCC < SRR4302533.1860975/94‑1 (MQ=60)
CTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCA > SRR4302533.1886320/1‑94 (MQ=60)
|
CGCTCGGCAATTTGCTGCTTGCCCATGCCGCGAATTTTCAGCCCCCACGCCATGTTTTCTTCGACACTCATATGCGGATAAAGCGCGTAGTTCTGGAACACCATCGCAATCCCGCGATCTTTTGGCTCCATTTCAGTCACGCGCTGGTCGTTGATCCAGATATCGCCTTCTGTCACCCGCTCCA > NC_000913/3586471‑3586654
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
