Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,597,072	T→C	D73G (GAC→GGC)	b3460 ←	LivJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,597,072	0	T	C	100.0%	800.5 / NA	245	D73G (GAC→GGC)	b3460	LivJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (107/138); total (107/138)

Only 100 of 250 total aligned reads displayed.

GAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  NC_000913/3596982‑3597161

 aagaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCTGGTCACAGGCATCGCCat                                                                                        >  2:4461969/1‑93 (MQ=255)

 aagaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCat                                                                                        <  2:2338902/93‑1 (MQ=255)

  agaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCata                                                                                       >  1:1211421/1‑93 (MQ=255)

  agaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCata                                                                                       <  2:1518509/93‑1 (MQ=255)

  agaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCata                                                                                       <  1:5362611/93‑1 (MQ=255)

   gaaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACGTCGTGTTTCGGGTCACAGGCATCGCCatat                                                                                      <  2:1317591/93‑1 (MQ=255)

    aaCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAtt                                                                                     <  1:3421423/93‑1 (MQ=255)

     aCAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAttt                                                                                    >  1:3963366/1‑93 (MQ=255)

       agagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTa                                                                                  <  1:738777/93‑1 (MQ=255)

       agagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTa                                                                                  >  2:658219/1‑93 (MQ=255)

       agagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTa                                                                                  >  2:1998821/1‑93 (MQ=255)

        gagTTGACCAATCACATATTTACTGCCGTCGTTAACGTCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAc                                                                                 <  1:2049280/93‑1 (MQ=255)

        gagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAc                                                                                 >  1:1717461/1‑93 (MQ=255)

        aagGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAc                                                                                 <  2:4885650/92‑1 (MQ=255)

         agGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACg                                                                                >  1:5154980/1‑93 (MQ=255)

         agGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACg                                                                                >  1:6160693/1‑93 (MQ=255)

         agGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACg                                                                                >  1:1948251/1‑93 (MQ=255)

          ggTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGa                                                                               <  2:1174829/93‑1 (MQ=255)

          ggTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGa                                                                               >  1:1394779/1‑93 (MQ=255)

            tGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGAtt                                                                             <  1:5566265/93‑1 (MQ=255)

              aCCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTg                                                                           <  1:3328329/93‑1 (MQ=255)

              aCCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTg                                                                           >  1:4869009/1‑93 (MQ=255)

                 aaTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAg                                                                        >  2:6043893/1‑93 (MQ=255)

                 aaTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAg                                                                        >  2:2286340/1‑93 (MQ=255)

                 aaTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAg                                                                        >  2:4602333/1‑93 (MQ=255)

                 aaTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAg                                                                        >  2:5802762/1‑93 (MQ=255)

                 aaTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAg                                                                        >  1:4545118/1‑93 (MQ=255)

                  aTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGt                                                                       >  1:2982964/1‑93 (MQ=255)

                  aTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGt                                                                       <  1:3829903/93‑1 (MQ=255)

                  aTCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGt                                                                       >  1:247682/1‑93 (MQ=255)

                    cacaTATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGttt                                                                     <  1:2336496/93‑1 (MQ=255)

                     acaTATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttg                                                                    <  1:4511990/93‑1 (MQ=255)

                      caTATTTAATGCCGTCGTTAACGACTTTGTTCGCCACGGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttgt                                                                   <  2:2785612/93‑1 (MQ=255)

                      caTATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTttgt                                                                   >  1:4093078/1‑93 (MQ=255)

                         atTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGc                                                                >  1:1571189/1‑93 (MQ=255)

                           ttAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCt                                                              <  2:2762606/93‑1 (MQ=255)

                           ttAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCt                                                              <  2:541041/93‑1 (MQ=255)

                            tAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCtt                                                             <  2:324850/93‑1 (MQ=255)

                            tAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCtt                                                             >  2:2152926/1‑93 (MQ=255)

                             aaTGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCttt                                                            <  2:2524612/93‑1 (MQ=255)

                              aggCCGTCTTGAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTa                                                           <  2:4994328/91‑1 (MQ=255)

                               tGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCTCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTaa                                                          <  2:5632706/93‑1 (MQ=255)

                               tGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGTAGTTTGTTGCCTTTaa                                                          <  2:1464564/93‑1 (MQ=255)

                               tGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTaa                                                          <  2:2950008/93‑1 (MQ=255)

                               tGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTaa                                                          <  2:3376359/93‑1 (MQ=255)

                               tGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTaa                                                          <  2:5587824/93‑1 (MQ=255)

                                 ccGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATg                                                        <  1:2439448/93‑1 (MQ=255)

                                 ccGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATg                                                        <  1:2214168/93‑1 (MQ=255)

                                  cgtcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgc                                                       >  2:192768/1‑93 (MQ=255)

                                   gtcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgcc                                                      >  2:2242324/1‑93 (MQ=255)

                                    tcgtTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATgccg                                                     >  1:1530415/1‑93 (MQ=255)

                                       ttAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCt                                                  >  2:2061650/1‑93 (MQ=255)

                                       ttAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCt                                                  <  2:886643/93‑1 (MQ=255)

                                         aaCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCttt                                                >  1:1012437/1‑93 (MQ=255)

                                         aaCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCttt                                                >  2:801924/1‑93 (MQ=255)

                                         aaCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCttt                                                >  2:5209270/1‑93 (MQ=255)

                                         aaCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCttt                                                >  1:6109843/1‑93 (MQ=255)

                                         aaCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCttt                                                <  1:5733594/93‑1 (MQ=255)

                                         aaCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCttt                                                <  1:32286/93‑1 (MQ=255)

                                          aCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTa                                               <  1:2386355/93‑1 (MQ=255)

                                          aCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTa                                               <  2:3762196/93‑1 (MQ=255)

                                          aCGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTa                                               <  1:4286360/93‑1 (MQ=255)

                                           cGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAg                                              <  2:513649/93‑1 (MQ=255)

                                             aCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCg                                            >  1:910787/1‑93 (MQ=255)

                                             aCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCg                                            <  2:4163483/93‑1 (MQ=255)

                                              cTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGt                                           >  1:5970537/1‑93 (MQ=255)

                                               tttGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGtt                                          >  1:5097259/1‑93 (MQ=255)

                                                ttGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTg                                         <  1:973207/93‑1 (MQ=255)

                                                  gTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGat                                       <  2:4459436/93‑1 (MQ=255)

                                                   ttCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGata                                      >  1:399896/1‑93 (MQ=255)

                                                    tCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGatat                                     <  2:1738404/93‑1 (MQ=255)

                                                         aCCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCa                                >  2:68880/1‑93 (MQ=255)

                                                           cGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAAc                              <  2:5842926/93‑1 (MQ=255)

                                                           cGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAAc                              <  1:3756421/93‑1 (MQ=255)

                                                             cAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAAcag                            >  2:6197801/1‑91 (MQ=255)

                                                             cAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCg                            <  2:4753319/93‑1 (MQ=255)

                                                             cAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCg                            >  1:3012271/1‑93 (MQ=255)

                                                              aaCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGc                           <  1:624912/93‑1 (MQ=255)

                                                               aCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGcc                          >  2:4015471/1‑93 (MQ=255)

                                                               aCCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGcc                          >  1:3122281/1‑93 (MQ=255)

                                                                ccGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCt                         >  2:3146722/1‑93 (MQ=255)

                                                                ccGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCt                         >  2:2866087/1‑93 (MQ=255)

                                                                    cTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctc                     <  1:416174/93‑1 (MQ=255)

                                                                    cTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctc                     <  1:4705290/93‑1 (MQ=255)

                                                                     tGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGctct                    >  2:5295315/1‑93 (MQ=255)

                                                                      gTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTg                   <  1:547926/93‑1 (MQ=255)

                                                                      gTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTg                   <  1:2824714/93‑1 (MQ=255)

                                                                       tttCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTgc                  <  1:3565760/93‑1 (MQ=255)

                                                                       tttCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTgc                  <  1:3398759/93‑1 (MQ=255)

                                                                           gggTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCg              >  2:1602206/1‑93 (MQ=255)

                                                                              tCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTa           <  1:1807979/93‑1 (MQ=255)

                                                                               cacaGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTaa          >  2:2452020/1‑93 (MQ=255)

                                                                                 caGGCATCTCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATCCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGTTAAAc        <  2:1352313/93‑1 (MQ=255)

                                                                                 caGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAAc        <  1:525831/93‑1 (MQ=255)

                                                                                  aGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACt       <  1:3715973/93‑1 (MQ=255)

                                                                                  aGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACt       >  1:5207633/1‑93 (MQ=255)

                                                                                    gCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTcc     <  2:1103583/93‑1 (MQ=255)

                                                                                    gCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTcc     <  2:2358989/93‑1 (MQ=255)

                                                                                       tCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTgg  >  1:303796/1‑93 (MQ=255)

                                                                                       tCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTgg  >  1:5506419/1‑93 (MQ=255)

GAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  NC_000913/3596982‑3597161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  NC_000913/3596980‑3597161

ATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCTCCTGTTTCGGGTCACAGGCATCGCC                                                                                          <  SRR4302533.3127468/94‑1 (MQ=60)

ATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCC                                                                                          >  SRR4302533.5632319/1‑94 (MQ=60)

AAGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCC                                                                                          >  SRR4302533.2073458/1‑94 (MQ=60)

  GAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCAT                                                                                        <  SRR4302533.2380563/94‑1 (MQ=60)

   AAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATA                                                                                       >  SRR4302533.1218708/1‑94 (MQ=60)

    AGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAT                                                                                      <  SRR4302533.5531459/94‑1 (MQ=60)

    AGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATAT                                                                                      <  SRR4302533.5394818/94‑1 (MQ=60)

      AACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTT                                                                                    >  SRR4302533.3820870/1‑94 (MQ=60)

      AACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTT                                                                                    >  SRR4302533.3987512/1‑94 (MQ=60)

      AACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTT                                                                                    <  SRR4302533.3442562/94‑1 (MQ=60)

         AGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAC                                                                                 <  SRR4302533.743129/94‑1 (MQ=60)

         AGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAC                                                                                 >  SRR4302533.5529575/1‑94 (MQ=60)

         AGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAC                                                                                 >  SRR4302533.1727872/1‑94 (MQ=60)

         AGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTAC                                                                                 >  SRR4302533.2731817/1‑94 (MQ=60)

          GAGTTGACCAATCACATATTTACTGCCGTCGTTAACGTCTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACG                                                                                <  SRR4302533.2061920/94‑1 (MQ=60)

          GAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACG                                                                                <  SRR4302533.1568017/94‑1 (MQ=60)

          GAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACG                                                                                >  SRR4302533.6197742/1‑94 (MQ=60)

          GAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACG                                                                                >  SRR4302533.1960128/1‑94 (MQ=60)

          GAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACG                                                                                >  SRR4302533.5186110/1‑94 (MQ=60)

           AGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGA                                                                               >  SRR4302533.2067666/1‑94 (MQ=60)

           AGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGA                                                                               >  SRR4302533.1403184/1‑94 (MQ=60)

             GTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATT                                                                             >  SRR4302533.4177727/1‑94 (MQ=60)

              TGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTT                                                                            <  SRR4302533.4088261/94‑1 (MQ=60)

              TGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTT                                                                            <  SRR4302533.5599910/94‑1 (MQ=60)

               GACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTG                                                                           >  SRR4302533.4898511/1‑94 (MQ=60)

               GACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTG                                                                           >  SRR4302533.1246578/1‑94 (MQ=60)

                ACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGGTTTGC                                                                          >  SRR4302533.3127521/1‑94 (MQ=60)

                ACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGC                                                                          <  SRR4302533.3348896/94‑1 (MQ=60)

                ACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGC                                                                          <  SRR4302533.2487747/94‑1 (MQ=60)

                 CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATCTTTTACGATTTGCA                                                                         >  SRR4302533.1750021/1‑94 (MQ=60)

                 CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                         <  SRR4302533.4557083/94‑1 (MQ=60)

                 CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                         <  SRR4302533.1950182/94‑1 (MQ=60)

                 CCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                         >  SRR4302533.3046579/1‑94 (MQ=60)

                 CCAATCACATATTAAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCA                                                                         <  SRR4302533.6065738/94‑1 (MQ=60)

                  CAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAG                                                                        >  SRR4302533.4572644/1‑94 (MQ=60)

                   AATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGT                                                                       >  SRR4302533.249211/1‑94 (MQ=60)

                   AATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGT                                                                       >  SRR4302533.4209750/1‑94 (MQ=60)

                   AATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGT                                                                       >  SRR4302533.3001211/1‑94 (MQ=60)

                    ATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTT                                                                      <  SRR4302533.3853316/94‑1 (MQ=60)

                    ATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTT                                                                      <  SRR4302533.3030215/94‑1 (MQ=60)

                     TCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTT                                                                     <  SRR4302533.4142524/94‑1 (MQ=60)

                      CACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTG                                                                    <  SRR4302533.2350958/94‑1 (MQ=60)

                      CACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTG                                                                    <  SRR4302533.5385778/94‑1 (MQ=60)

                       ACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGT                                                                   >  SRR4302533.4117993/1‑94 (MQ=60)

                       ACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGT                                                                   <  SRR4302533.4539311/94‑1 (MQ=60)

                         ATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTG                                                                 <  SRR4302533.2952199/94‑1 (MQ=60)

                          TATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGC                                                                >  SRR4302533.1580654/1‑94 (MQ=60)

                          TATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGC                                                                <  SRR4302533.5548738/94‑1 (MQ=60)

                           ATTTAATGCCGTCGTTAACGACTTTGTTCGCCAGCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCT                                                               >  SRR4302533.3299788/1‑94 (MQ=60)

                            TTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCT                                                              <  SRR4302533.3639261/94‑1 (MQ=60)

                             TTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTT                                                             >  SRR4302533.4916131/1‑94 (MQ=60)

                                AGGCCGTCGTTAACGACTTTGTTCGCCGCCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAA                                                          <  SRR4302533.523059/94‑1 (MQ=60)

                                 TGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCTCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAAT                                                         <  SRR4302533.3989409/94‑1 (MQ=60)

                                 TGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAAT                                                         <  SRR4302533.701981/94‑1 (MQ=60)

                                 TGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAAT                                                         <  SRR4302533.6281752/94‑1 (MQ=60)

                                  GCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATG                                                        >  SRR4302533.1683011/1‑94 (MQ=60)

                                   CCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGC                                                       >  SRR4302533.1491516/1‑94 (MQ=60)

                                   CCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGC                                                       <  SRR4302533.2454512/94‑1 (MQ=60)

                                   CCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGC                                                       <  SRR4302533.2227831/94‑1 (MQ=60)

                                    CGTCGTTAACGACTTTGTTCGCNACCGCAACCGCCTGTTTCGGGTCACAGGCATNGCCATATTNTACGATTNGCNGTTTGTTGCTNTNANTNCC                                                      >  SRR4302533.1923503/1‑94 (MQ=60)

                                     GTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCG                                                     <  SRR4302533.5209082/94‑1 (MQ=60)

                                     GTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCG                                                     >  SRR4302533.1539615/1‑94 (MQ=60)

                                     GTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCG                                                     >  SRR4302533.3007220/1‑94 (MQ=60)

                                     GTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCG                                                     <  SRR4302533.883430/94‑1 (MQ=60)

                                       CGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCC                                                   <  SRR4302533.3785401/94‑1 (MQ=60)

                                       CGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCC                                                   >  SRR4302533.98568/1‑94 (MQ=60)

                                          TAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTT                                                >  SRR4302533.1018362/1‑94 (MQ=60)

                                          TAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTT                                                <  SRR4302533.2623308/94‑1 (MQ=60)

                                          TAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTT                                                >  SRR4302533.6146726/1‑94 (MQ=60)

                                          TAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTT                                                >  SRR4302533.34303/1‑94 (MQ=60)

                                           AACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTA                                               <  SRR4302533.32508/94‑1 (MQ=60)

                                           AACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTA                                               <  SRR4302533.5768210/94‑1 (MQ=60)

                                            ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                              >  SRR4302533.3621325/1‑94 (MQ=60)

                                            ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                              <  SRR4302533.6190091/94‑1 (MQ=60)

                                            ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                              <  SRR4302533.2401101/94‑1 (MQ=60)

                                            ACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAG                                              <  SRR4302533.4312133/94‑1 (MQ=60)

                                             CGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGC                                             <  SRR4302533.4929808/94‑1 (MQ=60)

                                              GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                            >  SRR4302533.916129/1‑94 (MQ=60)

                                              GACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCG                                            >  SRR4302533.2044420/1‑94 (MQ=60)

                                               ACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGT                                           >  SRR4302533.6006681/1‑94 (MQ=60)

                                               ACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGT                                           >  SRR4302533.1174970/1‑94 (MQ=60)

                                                CTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTT                                          >  SRR4302533.3438576/1‑94 (MQ=60)

                                                CTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTT                                          <  SRR4302533.5749591/94‑1 (MQ=60)

                                                CTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTT                                          >  SRR4302533.5128054/1‑94 (MQ=60)

                                                 TTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTG                                         <  SRR4302533.445187/94‑1 (MQ=60)

                                                 TTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTCTGTTGCCTTTAATGCCGCCTTTAGCGTTG                                         <  SRR4302533.609167/94‑1 (MQ=60)

                                                  TTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGA                                        <  SRR4302533.978921/94‑1 (MQ=60)

                                                    GTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATA                                      >  SRR4302533.402309/1‑94 (MQ=60)

                                                    GTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATA                                      >  SRR4302533.3952478/1‑94 (MQ=60)

                                                      TCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATC                                    <  SRR4302533.5314603/94‑1 (MQ=60)

                                                       CGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCC                                   <  SRR4302533.3118103/94‑1 (MQ=60)

                                                       CGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCC                                   <  SRR4302533.314936/94‑1 (MQ=60)

                                                          CACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCA                                <  SRR4302533.5246395/94‑1 (MQ=60)

                                                          CACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCA                                >  SRR4302533.4536644/1‑94 (MQ=60)

                                                           ACCGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAA                               <  SRR4302533.1323734/94‑1 (MQ=60)

                                                             CGCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACC                             <  SRR4302533.3779447/94‑1 (MQ=60)

                                                              GCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCG                            <  SRR4302533.948350/94‑1 (MQ=60)

                                                              GCAACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCG                            >  SRR4302533.3030700/1‑94 (MQ=60)

                                                                AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                          <  SRR4302533.628581/94‑1 (MQ=60)

                                                                AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                          >  SRR4302533.3995137/1‑94 (MQ=60)

                                                                AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                          >  SRR4302533.3141476/1‑94 (MQ=60)

                                                                AACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCC                          <  SRR4302533.5688822/94‑1 (MQ=60)

                                                                 ACCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCT                         >  SRR4302533.5453543/1‑94 (MQ=60)

                                                                  CCGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTG                        >  SRR4302533.1795237/1‑94 (MQ=60)

                                                                   CGCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGC                       >  SRR4302533.620354/1‑94 (MQ=60)

                                                                    GCCTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCT                      >  SRR4302533.2349766/1‑94 (MQ=60)

                                                                      CTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCT                    >  SRR4302533.3349493/1‑94 (MQ=60)

                                                                      CTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCT                    >  SRR4302533.3741280/1‑94 (MQ=60)

                                                                      CTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCT                    <  SRR4302533.418674/94‑1 (MQ=60)

                                                                      CTGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCT                    <  SRR4302533.4733808/94‑1 (MQ=60)

                                                                       TGTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTG                   >  SRR4302533.2258964/1‑94 (MQ=60)

                                                                        GTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGC                  <  SRR4302533.551178/94‑1 (MQ=60)

                                                                        GTTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGC                  <  SRR4302533.2842097/94‑1 (MQ=60)

                                                                         TTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCG                 <  SRR4302533.3419748/94‑1 (MQ=60)

                                                                         TTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCG                 <  SRR4302533.4634686/94‑1 (MQ=60)

                                                                         TTTCGGGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCG                 <  SRR4302533.3587737/94‑1 (MQ=60)

                                                                              GGTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGT            <  SRR4302533.814904/94‑1 (MQ=60)

                                                                               GTCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTA           <  SRR4302533.1560037/94‑1 (MQ=60)

                                                                                TCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAA          >  SRR4302533.5134040/1‑94 (MQ=60)

                                                                                TCACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAA          <  SRR4302533.1818979/94‑1 (MQ=60)

                                                                                 CACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAA         >  SRR4302533.4820106/1‑94 (MQ=60)

                                                                                  ACAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAAC        >  SRR4302533.2437903/1‑94 (MQ=60)

                                                                                   CAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACT       >  SRR4302533.5239007/1‑94 (MQ=60)

                                                                                   CAGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACT       <  SRR4302533.528947/94‑1 (MQ=60)

                                                                                    AGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTC      <  SRR4302533.3738784/94‑1 (MQ=60)

                                                                                    AGGCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTC      >  SRR4302533.4645775/1‑94 (MQ=60)

                                                                                      GCATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCT    <  SRR4302533.1992602/94‑1 (MQ=60)

                                                                                       CATCGCCATATTTTACGATTTGCATTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTG   <  SRR4302533.5909414/94‑1 (MQ=60)

                                                                                       CATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTG   <  SRR4302533.358009/94‑1 (MQ=60)

                                                                                        ATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  <  SRR4302533.325161/94‑1 (MQ=60)

                                                                                        ATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  SRR4302533.305651/1‑94 (MQ=60)

                                                                                        ATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  <  SRR4302533.2440933/94‑1 (MQ=60)

                                                                                        ATCGCCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  SRR4302533.5539647/1‑94 (MQ=60)

ATGAAGAACAGAGGTGACCAATCACATATTTAATGCCGTCGTTAACGACTTTGTTCGCCACCGCAACCGCCTGTTTCGGGTCACAGGCATCGTCATATTTTACGATTTGCAGTTTGTTGCCTTTAATGCCGCCTTTAGCGTTGATATCCGCAACCGCCTGCTCTGCGCCGGTAAACTCCTGG  >  NC_000913/3596980‑3597161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`