Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,614,182	T→C	F124L (TTC→CTC)	nikC →	NikC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,614,182	0	T	C	100.0%	845.3 / NA	259	F124L (TTC→CTC)	nikC	NikC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (126/133); total (126/133)

Only 100 of 266 total aligned reads displayed.

GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTG  >  NC_000913/3614092‑3614271

ggcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCAACATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTc                                                                                         >  1:5298599/1‑93 (MQ=255)

 gcAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGctct                                                                                        <  2:1604571/93‑1 (MQ=255)

  cAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCtt                                                                                       <  2:4716063/93‑1 (MQ=255)

   aGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCttt                                                                                      >  1:5833788/1‑93 (MQ=255)

    gcgcCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCTCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTa                                                                                     <  1:2152049/93‑1 (MQ=255)

    gcgcCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTa                                                                                     <  1:4208376/93‑1 (MQ=255)

    gcgcCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTa                                                                                     >  1:5527902/1‑93 (MQ=255)

     cgcCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTAt                                                                                    <  1:3484619/93‑1 (MQ=255)

         gcgTTGATTGGCGGGCGCGTTGATCAGGCCACCAGGCGCGTCGCCGATATGTTTATGACCTGCCCGACCTCGATTCTGTCGCTCTTTATGGtt                                                                                <  2:4948851/91‑1 (MQ=255)

          ggTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTg                                                                               <  1:608887/93‑1 (MQ=255)

           gTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTgg                                                                              >  2:4048735/1‑93 (MQ=255)

           gTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTgg                                                                              >  2:5386174/1‑93 (MQ=255)

            ttGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGc                                                                             >  1:5640057/1‑93 (MQ=255)

            ttGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGc                                                                             <  1:1064888/93‑1 (MQ=255)

              taTTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGt                                                                           <  2:840357/92‑1 (MQ=255)

              gATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGt                                                                           >  1:3844024/1‑93 (MQ=255)

                 tGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCt                                                                        <  1:3776600/93‑1 (MQ=255)

                   gcgggcgCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCg                                                                      >  1:5765173/1‑93 (MQ=255)

                      ggcgCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCa                                                                   >  1:4512311/1‑93 (MQ=255)

                      ggcgCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCa                                                                   >  2:1955677/1‑93 (MQ=255)

                      ggcgCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCa                                                                   >  1:193845/1‑93 (MQ=255)

                        cgcgTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCAcc                                                                 <  1:263688/93‑1 (MQ=255)

                        cgcgTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCAcc                                                                 <  2:2338906/93‑1 (MQ=255)

                         gcgTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCg                                                                >  1:4992820/1‑93 (MQ=255)

                         gcgTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCg                                                                <  2:3013033/93‑1 (MQ=255)

                          cgTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCgg                                                               <  2:599568/93‑1 (MQ=255)

                           gTTGATCAGGCCCCCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCggg                                                              <  2:95938/93‑1 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             <  2:1161052/93‑1 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             <  2:1385105/93‑1 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             <  2:5154266/93‑1 (MQ=255)

                            ttGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGc                                                             <  2:6290172/93‑1 (MQ=255)

                               aTCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGa                                                          <  1:4027280/93‑1 (MQ=255)

                                tCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGAc                                                         >  2:1054468/1‑93 (MQ=255)

                                   ggCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGGTGACCaa                                                      >  2:4362033/1‑93 (MQ=255)

                                   ggCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCaa                                                      <  1:2744688/93‑1 (MQ=255)

                                    gCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAAc                                                     <  1:223784/93‑1 (MQ=255)

                                    gCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAAc                                                     >  2:1472586/1‑93 (MQ=255)

                                      caccaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGt                                                   >  1:4629321/1‑93 (MQ=255)

                                       accaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTa                                                  >  2:4783276/1‑93 (MQ=255)

                                       accaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTa                                                  >  1:4432791/1‑93 (MQ=255)

                                        ccaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTaa                                                 <  1:4265587/93‑1 (MQ=255)

                                        ccaTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTaa                                                 >  1:712627/1‑93 (MQ=255)

                                         caTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTatt                                                <  1:3558577/93‑3 (MQ=255)

                                         caTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAAt                                                <  2:3428127/93‑1 (MQ=255)

                                         caTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAAt                                                <  1:372698/93‑1 (MQ=255)

                                         caTGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAAt                                                <  2:718483/93‑1 (MQ=255)

                                           tGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTa                                              <  2:4109988/93‑1 (MQ=255)

                                            gcgcGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTat                                             <  1:2386795/93‑1 (MQ=255)

                                            gcgcGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTat                                             <  2:2667962/93‑1 (MQ=255)

                                              gcgTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcg                                           <  1:1757884/93‑1 (MQ=255)

                                               cgTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgc                                          >  2:3320869/1‑93 (MQ=255)

                                               cgTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgc                                          <  1:5718588/93‑1 (MQ=255)

                                                gTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgcc                                         >  2:2028319/1‑93 (MQ=255)

                                                gTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgcc                                         <  1:4055872/93‑1 (MQ=255)

                                                 tCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTTGCGTGCTCGGCACCGGGCTGACCGACGTGATTatcgcca                                        >  2:5707139/1‑93 (MQ=255)

                                                  cGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccat                                       <  1:2560165/93‑1 (MQ=255)

                                                   gctgATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatc                                      >  1:485735/4‑93 (MQ=255)

                                                   gCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatc                                      <  2:902481/93‑1 (MQ=255)

                                                   gCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatc                                      <  2:2990969/93‑1 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   >  2:2253369/1‑93 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   <  2:3218279/93‑1 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   >  2:2871883/1‑93 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   <  2:331259/93‑1 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   >  2:1748920/1‑93 (MQ=255)

                                                      gATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTatcgccatcgcc                                   >  1:6238372/1‑93 (MQ=255)

                                                       atatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGccc                                  >  1:5862670/1‑93 (MQ=255)

                                                       atatGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGccc                                  <  2:4566516/93‑1 (MQ=255)

                                                         atGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTg                                <  2:4381152/93‑1 (MQ=255)

                                                          tGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGt                               >  2:220040/1‑93 (MQ=255)

                                                          tGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGt                               <  1:5057863/93‑1 (MQ=255)

                                                           gTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGACATCGCCCTGTc                              >  2:3705567/1‑93 (MQ=255)

                                                               aTGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCAc                          <  1:309186/93‑1 (MQ=255)

                                                                tGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACt                         <  1:902381/93‑1 (MQ=255)

                                                                 gACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTg                        <  2:2902897/93‑1 (MQ=255)

                                                                  aCCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGCCCAACGTAATTATCGCCATCGCCCTGTCGCACTgg                       >  1:592094/1‑93 (MQ=255)

                                                                  aCCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTgg                       >  2:3623303/1‑93 (MQ=255)

                                                                  aCCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTgg                       <  1:6119958/93‑1 (MQ=255)

                                                                   ccTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTggg                      <  2:3184454/93‑1 (MQ=255)

                                                                    cTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGc                     <  2:355910/93‑1 (MQ=255)

                                                                     ttCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCg                    <  1:5363547/93‑1 (MQ=255)

                                                                      tCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGt                   <  2:221698/93‑1 (MQ=255)

                                                                      tCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGt                   >  1:3368629/1‑93 (MQ=255)

                                                                       cccGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTg                  >  1:1354745/1‑93 (MQ=255)

                                                                          gACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTa               >  2:3473545/1‑93 (MQ=255)

                                                                           aCCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAt              >  1:5168338/1‑93 (MQ=255)

                                                                           aCCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAt              >  2:616862/1‑93 (MQ=255)

                                                                            ccTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATg             >  1:1566076/1‑93 (MQ=255)

                                                                              tCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCa           <  1:2335504/93‑1 (MQ=255)

                                                                              tCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCa           >  1:3912111/1‑93 (MQ=255)

                                                                               cGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAc          <  1:795184/93‑1 (MQ=255)

                                                                                gATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCATCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACg         >  1:4790605/1‑93 (MQ=255)

                                                                                gATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACg         >  1:1913110/1‑93 (MQ=255)

                                                                                gATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACg         >  2:5443246/1‑93 (MQ=255)

                                                                                 aTTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGc        >  2:5501535/1‑93 (MQ=255)

                                                                                 aTTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGc        >  1:1543864/1‑93 (MQ=255)

                                                                                  ttCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCa       >  1:321341/1‑93 (MQ=255)

                                                                                   tCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGcct      >  2:2514521/1‑91 (MQ=255)

                                                                                    cTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATg     <  2:3909540/93‑1 (MQ=255)

                                                                                      gTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGt   >  2:4003176/1‑93 (MQ=255)

                                                                                      gTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGt   <  2:3121104/93‑1 (MQ=255)

GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTG  >  NC_000913/3614092‑3614271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  >  NC_000913/3614090‑3614275

GCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCT                                                                                              <  SRR4302533.5136318/94‑1 (MQ=60)

GCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCT                                                                                              <  SRR4302533.4300335/94‑1 (MQ=60)

 CGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTC                                                                                             >  SRR4302533.2913814/1‑94 (MQ=60)

 CGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCAACATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTC                                                                                             >  SRR4302533.5330340/1‑94 (MQ=60)

  GGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCT                                                                                            >  SRR4302533.3629625/1‑94 (MQ=60)

   GCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTT                                                                                           <  SRR4302533.2674272/94‑1 (MQ=60)

    CAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTT                                                                                          >  SRR4302533.5869045/1‑94 (MQ=60)

     AGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTA                                                                                         >  SRR4302533.889614/1‑94 (MQ=60)

     AGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTA                                                                                         >  SRR4302533.5561275/1‑94 (MQ=60)

      GCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCTCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTAT                                                                                        <  SRR4302533.2165303/94‑1 (MQ=60)

      GCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTAT                                                                                        <  SRR4302533.1685010/94‑1 (MQ=60)

      GCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTAT                                                                                        <  SRR4302533.4233836/94‑1 (MQ=60)

       CGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATG                                                                                       <  SRR4302533.3506108/94‑1 (MQ=60)

         CCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGT                                                                                     >  SRR4302533.908033/1‑94 (MQ=60)

          CGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTT                                                                                    >  SRR4302533.5614277/1‑94 (MQ=60)

           GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTG                                                                                   <  SRR4302533.3441772/94‑1 (MQ=60)

           GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTG                                                                                   >  SRR4302533.485495/1‑94 (MQ=60)

           GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTG                                                                                   <  SRR4302533.1439439/94‑1 (MQ=60)

           GGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGGTG                                                                                   >  SRR4302533.5459/1‑94 (MQ=60)

            GGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGG                                                                                  <  SRR4302533.3593548/94‑1 (MQ=60)

            GGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGG                                                                                  <  SRR4302533.6173136/94‑1 (MQ=60)

            GGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGG                                                                                  <  SRR4302533.612470/94‑1 (MQ=60)

             GTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGC                                                                                 >  SRR4302533.5674149/1‑94 (MQ=60)

              TTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCG                                                                                <  SRR4302533.1071142/94‑1 (MQ=60)

               TGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGT                                                                               >  SRR4302533.3867502/1‑94 (MQ=60)

                   TGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTC                                                                           >  SRR4302533.585069/1‑94 (MQ=60)

                   TGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTC                                                                           <  SRR4302533.3799746/94‑1 (MQ=60)

                    GGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCG                                                                          >  SRR4302533.6108762/1‑94 (MQ=60)

                    GGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCG                                                                          >  SRR4302533.5799964/1‑94 (MQ=60)

                      GGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGC                                                                        <  SRR4302533.1535459/94‑1 (MQ=60)

                      CGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGC                                                                        >  SRR4302533.5562633/1‑94 (MQ=60)

                      CGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGC                                                                        <  SRR4302533.3942907/94‑1 (MQ=60)

                       GGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCA                                                                       >  SRR4302533.195069/1‑94 (MQ=60)

                       GGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCA                                                                       >  SRR4302533.4539634/1‑94 (MQ=60)

                       GGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCA                                                                       <  SRR4302533.4733642/94‑1 (MQ=60)

                          CGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCG                                                                    <  SRR4302533.265288/94‑1 (MQ=60)

                          CGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCG                                                                    >  SRR4302533.5023090/1‑94 (MQ=60)

                          CGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCG                                                                    >  SRR4302533.5150664/1‑94 (MQ=60)

                           GCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGG                                                                   <  SRR4302533.737320/94‑1 (MQ=60)

                            CGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGG                                                                  >  SRR4302533.4515721/1‑94 (MQ=60)

                             GTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGC                                                                 >  SRR4302533.5997816/1‑94 (MQ=60)

                                 ATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGAC                                                             <  SRR4302533.4051796/94‑1 (MQ=60)

                                  TCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACC                                                            >  SRR4302533.3878141/1‑94 (MQ=60)

                                     GGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAAC                                                         >  SRR4302533.1818194/1‑94 (MQ=60)

                                     GGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAAC                                                         <  SRR4302533.2761512/94‑1 (MQ=60)

                                      GCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACG                                                        <  SRR4302533.225181/94‑1 (MQ=60)

                                       CCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGT                                                       >  SRR4302533.2362072/1‑94 (MQ=60)

                                       CCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGT                                                       >  SRR4302533.4657379/1‑94 (MQ=60)

                                        CACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTA                                                      <  SRR4302533.5182467/94‑1 (MQ=60)

                                        CACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTA                                                      >  SRR4302533.4247330/1‑94 (MQ=60)

                                        CACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTA                                                      >  SRR4302533.4459587/1‑94 (MQ=60)

                                        CACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTA                                                      >  SRR4302533.2111669/1‑94 (MQ=60)

                                         ACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAA                                                     >  SRR4302533.716833/1‑94 (MQ=60)

                                          CCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAAT                                                    <  SRR4302533.3839000/94‑1 (MQ=60)

                                          CCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAAT                                                    <  SRR4302533.4291274/94‑1 (MQ=60)

                                           CATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATT                                                   <  SRR4302533.374949/94‑1 (MQ=60)

                                           CATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATT                                                   >  SRR4302533.4643930/1‑94 (MQ=60)

                                           CATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGT‑ATTA                                                  <  SRR4302533.3580505/94‑1 (MQ=60)

                                            ATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTA                                                  >  SRR4302533.290575/1‑94 (MQ=60)

                                              GCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATC                                                <  SRR4302533.2401542/94‑1 (MQ=60)

                                              GCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTCTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATC                                                <  SRR4302533.5674737/94‑1 (MQ=60)

                                               CGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCG                                               >  SRR4302533.5054666/1‑94 (MQ=60)

                                               CGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCG                                               >  SRR4302533.6284284/1‑94 (MQ=60)

                                                GCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGC                                              <  SRR4302533.1768598/94‑1 (MQ=60)

                                                 CGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCC                                             <  SRR4302533.5753119/94‑1 (MQ=60)

                                                  GTCGCCGATATGTTTATGACCTTCCCGCCCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            <  SRR4302533.426426/94‑1 (MQ=60)

                                                  GTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            <  SRR4302533.4080563/94‑1 (MQ=60)

                                                  GTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            <  SRR4302533.2217502/94‑1 (MQ=60)

                                                  GTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCA                                            <  SRR4302533.848626/94‑1 (MQ=60)

                                                    CGCTGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302533.488641/1‑94 (MQ=60)

                                                    CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302533.2575934/94‑1 (MQ=60)

                                                    CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302533.4498270/1‑94 (MQ=60)

                                                    CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302533.6308120/1‑94 (MQ=60)

                                                    CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          >  SRR4302533.1630943/1‑94 (MQ=60)

                                                    CGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATC                                          <  SRR4302533.5314039/94‑1 (MQ=60)

                                                     GCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCG                                         >  SRR4302533.5762219/1‑94 (MQ=60)

                                                     GCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCG                                         >  SRR4302533.4108460/1‑94 (MQ=60)

                                                     GCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGCAATTATCGCCATCG                                         >  SRR4302533.1562601/1‑94 (MQ=60)

                                                       CGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCC                                       >  SRR4302533.6275725/1‑94 (MQ=60)

                                                        GATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCC                                      >  SRR4302533.3277520/1‑94 (MQ=60)

                                                        GATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCC                                      >  SRR4302533.5946362/1‑94 (MQ=60)

                                                        GATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCC                                      >  SRR4302533.5269007/1‑94 (MQ=60)

                                                        GATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCC                                      >  SRR4302533.5898116/1‑94 (MQ=60)

                                                        GATATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCC                                      >  SRR4302533.3996079/1‑94 (MQ=60)

                                                          TATTTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTG                                    <  SRR4302533.4336980/94‑1 (MQ=60)

                                                           ATGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGT                                   <  SRR4302533.3432643/94‑1 (MQ=60)

                                                            TGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTC                                  >  SRR4302533.3757707/1‑94 (MQ=60)

                                                            TGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTC                                  >  SRR4302533.48582/1‑94 (MQ=60)

                                                            TGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTC                                  <  SRR4302533.2294137/94‑1 (MQ=60)

                                                            TGTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTC                                  <  SRR4302533.5088429/94‑1 (MQ=60)

                                                             GTTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCG                                 <  SRR4302533.4211415/94‑1 (MQ=60)

                                                              TTTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGC                                <  SRR4302533.2687285/94‑1 (MQ=60)

                                                               TTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCA                               >  SRR4302533.4566580/1‑94 (MQ=60)

                                                               TTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCA                               >  SRR4302533.5935360/1‑94 (MQ=60)

                                                               TTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCA                               <  SRR4302533.5895420/94‑1 (MQ=60)

                                                               TTATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCA                               >  SRR4302533.5004497/1‑94 (MQ=60)

                                                                TATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCAC                              >  SRR4302533.925940/1‑94 (MQ=60)

                                                                 ATGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACT                             <  SRR4302533.311080/94‑1 (MQ=60)

                                                                  TGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTG                            <  SRR4302533.907673/94‑1 (MQ=60)

                                                                  TGACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTG                            >  SRR4302533.3381119/1‑94 (MQ=60)

                                                                   GACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGCCCAACGTAATTATCGCCATCGCCCTGTCGCACTGG                           >  SRR4302533.595589/1‑94 (MQ=60)

                                                                   GACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGG                           <  SRR4302533.2579898/94‑1 (MQ=60)

                                                                   GACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGG                           >  SRR4302533.2407517/1‑94 (MQ=60)

                                                                   GACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGG                           <  SRR4302533.5803666/94‑1 (MQ=60)

                                                                    ACCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGG                          <  SRR4302533.6156864/94‑1 (MQ=60)

                                                                     CCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGC                         <  SRR4302533.3131978/94‑1 (MQ=60)

                                                                     CCTTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGC                         <  SRR4302533.625790/94‑1 (MQ=60)

                                                                       TTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGT                       >  SRR4302533.3389434/1‑94 (MQ=60)

                                                                       TTCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGT                       <  SRR4302533.5395766/94‑1 (MQ=60)

                                                                        TCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTG                      >  SRR4302533.1362887/1‑94 (MQ=60)

                                                                        TCCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTG                      <  SRR4302533.4898383/94‑1 (MQ=60)

                                                                         CCCGACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGG                     <  SRR4302533.6135777/94‑1 (MQ=60)

                                                                            GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  >  SRR4302533.1792993/1‑94 (MQ=60)

                                                                            GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  >  SRR4302533.3912553/1‑94 (MQ=60)

                                                                            GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  >  SRR4302533.5199535/1‑94 (MQ=60)

                                                                            GACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTAT                  >  SRR4302533.5363458/1‑94 (MQ=60)

                                                                             ACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTTATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATG                 >  SRR4302533.1944911/1‑94 (MQ=60)

                                                                             ACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATG                 >  SRR4302533.1178707/1‑94 (MQ=60)

                                                                             ACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATG                 >  SRR4302533.1575506/1‑94 (MQ=60)

                                                                             ACCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATG                 <  SRR4302533.5795677/94‑1 (MQ=60)

                                                                              CCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGC                >  SRR4302533.4059615/1‑94 (MQ=60)

                                                                              CCTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGC                <  SRR4302533.3515982/94‑1 (MQ=60)

                                                                               CTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCA               >  SRR4302533.3936001/1‑94 (MQ=60)

                                                                               CTCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCA               >  SRR4302533.2143211/1‑94 (MQ=60)

                                                                                TCGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCAC              <  SRR4302533.2349960/94‑1 (MQ=60)

                                                                                 CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCATCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             >  SRR4302533.4819629/1‑94 (MQ=60)

                                                                                 CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             >  SRR4302533.1924785/1‑94 (MQ=60)

                                                                                 CGATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACG             <  SRR4302533.799862/94‑1 (MQ=60)

                                                                                  GATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGC            >  SRR4302533.1553164/1‑94 (MQ=60)

                                                                                  GATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGC            <  SRR4302533.5467898/94‑1 (MQ=60)

                                                                                   ATTCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCA           >  SRR4302533.323306/1‑94 (MQ=60)

                                                                                     TCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATG         <  SRR4302533.2250312/94‑1 (MQ=60)

                                                                                     TCTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATG         <  SRR4302533.3751173/94‑1 (MQ=60)

                                                                                      CTGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGG        <  SRR4302533.235642/94‑1 (MQ=60)

                                                                                       TGTCGCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGG       >  SRR4302533.249091/1‑94 (MQ=60)

                                                                                           GCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGC   <  SRR4302533.3053341/94‑1 (MQ=60)

                                                                                           GCTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGC   >  SRR4302533.6054382/1‑94 (MQ=60)

                                                                                            CTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  <  SRR4302533.2238936/94‑1 (MQ=60)

                                                                                            CTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  >  SRR4302533.728693/1‑94 (MQ=60)

                                                                                            CTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  >  SRR4302533.302790/1‑94 (MQ=60)

GCGGCAGCGCCGGGTTGATTGGCGGGCGCGTTGATCAGGCCACCATGCGCGTCGCCGATATGTTTATGACCTTCCCGACCTCGATTCTGTCGTTCTTTATGGTTGGCGTGCTCGGCACCGGGCTGACCAACGTAATTATCGCCATCGCCCTGTCGCACTGGGCGTGGTATGCACGCATGGTGCGCA  >  NC_000913/3614090‑3614275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`