Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,620,852	A→G	T1344A (ACT→GCT)	rhsB →	RhsB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,620,852	0	A	G	100.0%	1040.0 / NA	314	T1344A (ACT→GCT)	rhsB	RhsB
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (126/188); total (126/188)

Only 100 of 316 total aligned reads displayed.

TCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATC  >  NC_000913/3620762‑3620941

tcAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCt                                                                                         <  1:6050290/93‑1 (MQ=255)

tcAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCt                                                                                         <  2:3667690/93‑1 (MQ=255)

tcAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCt                                                                                         >  2:2420421/1‑93 (MQ=255)

  aaCAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTAGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCa                                                                                       <  1:4732935/93‑1 (MQ=255)

      gCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGt                                                                                   >  2:1566168/1‑93 (MQ=255)

      gCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGt                                                                                   >  1:4462856/1‑93 (MQ=255)

      gCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGt                                                                                   <  1:401856/93‑1 (MQ=255)

         ccTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCa                                                                                >  2:3777965/1‑93 (MQ=255)

           tAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGa                                                                              >  2:3485380/1‑93 (MQ=255)

           tAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGa                                                                              <  1:893698/93‑1 (MQ=255)

            aaCCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGAt                                                                             >  1:2274852/1‑93 (MQ=255)

             aCCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATa                                                                            <  2:3074876/93‑1 (MQ=255)

               cGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGt                                                                          >  2:3314344/1‑93 (MQ=255)

                gaggagAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTc                                                                         >  1:5657302/1‑93 (MQ=255)

                  ggagAAAGAAAAGGATCATATCCGTTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCATCTTATCATGCTCATGGTGCAGATAGTCAt                                                                       >  1:3627683/1‑93 (MQ=255)

                   gagaAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATg                                                                      <  2:1123375/93‑1 (MQ=255)

                   gagaAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATg                                                                      >  2:4077893/1‑93 (MQ=255)

                     gaaagaaaAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGga                                                                    <  2:2737177/93‑1 (MQ=255)

                      aaagaaaAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGgag                                                                   >  1:3265707/1‑93 (MQ=255)

                      aaagaaaAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGgag                                                                   >  2:3026965/1‑93 (MQ=255)

                      aaagaaaAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGgag                                                                   >  1:5369382/1‑93 (MQ=255)

                        agaaaAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGaa                                                                 <  1:3786177/93‑1 (MQ=255)

                        agaaaAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGaa                                                                 >  1:3933225/1‑93 (MQ=255)

                          aaaaGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAata                                                               <  1:2137778/93‑1 (MQ=255)

                           aaaGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAatat                                                              <  2:2594297/93‑1 (MQ=255)

                            aaGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATAtt                                                             >  2:2175614/1‑93 (MQ=255)

                             aGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTg                                                            >  1:5341233/1‑93 (MQ=255)

                              ggATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTgg                                                           <  1:978423/93‑1 (MQ=255)

                              ggATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTgg                                                           <  2:34396/93‑1 (MQ=255)

                              ggATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTgg                                                           >  1:6033918/1‑93 (MQ=255)

                              ggATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTgg                                                           >  2:503417/1‑93 (MQ=255)

                               gATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTggg                                                          <  1:4080156/93‑1 (MQ=255)

                               gATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTggg                                                          >  2:4612996/1‑93 (MQ=255)

                                 tCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGAc                                                        <  2:4484077/93‑1 (MQ=255)

                                  cATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACg                                                       >  1:1508645/1‑93 (MQ=255)

                                    tatCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaa                                                     >  2:782537/1‑93 (MQ=255)

                                    tatCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaa                                                     <  1:5192713/93‑1 (MQ=255)

                                    tatCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaa                                                     <  1:3570251/93‑1 (MQ=255)

                                     atCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaaa                                                    <  2:1442975/93‑1 (MQ=255)

                                     atCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGaaa                                                    >  1:2956993/1‑93 (MQ=255)

                                      tCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAat                                                   <  2:1684322/93‑1 (MQ=255)

                                       ccATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAata                                                  <  2:4811111/93‑1 (MQ=255)

                                        caatCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAatat                                                 >  1:4323579/4‑93 (MQ=255)

                                        cATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAatat                                                 >  1:3966767/1‑93 (MQ=255)

                                        cATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAatat                                                 <  1:4222613/93‑1 (MQ=255)

                                        cATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAatat                                                 >  2:4651901/1‑93 (MQ=255)

                                        cATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAatat                                                 <  1:3495978/93‑1 (MQ=255)

                                         aTTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAtt                                                >  1:5564992/1‑93 (MQ=255)

                                          ttCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAttt                                               >  2:39301/1‑93 (MQ=255)

                                          ttCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAttt                                               >  2:3983356/1‑93 (MQ=255)

                                           tCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATTGAGAATATTGGGACGAAATAtttt                                              >  1:5629532/1‑93 (MQ=255)

                                           tCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAtttt                                              <  2:4552518/93‑1 (MQ=255)

                                              aTAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAg                                           <  2:4978121/93‑1 (MQ=255)

                                              aTAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAg                                           <  2:4350370/93‑1 (MQ=255)

                                                  cccTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTaa                                       >  2:6231323/1‑93 (MQ=255)

                                                   ccTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTaaa                                      >  1:5750198/1‑93 (MQ=255)

                                                    cTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAg                                     <  2:3238823/93‑1 (MQ=255)

                                                    cTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAg                                     >  1:4822309/1‑93 (MQ=255)

                                                     ttGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGa                                    <  1:1378709/93‑1 (MQ=255)

                                                       gCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAGTATTGGGACGAAATATTTTCAGGTAAAGATg                                  >  1:3132706/1‑93 (MQ=255)

                                                       gCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATg                                  <  1:752377/93‑1 (MQ=255)

                                                       gCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATg                                  <  1:2760956/93‑1 (MQ=255)

                                                         ccTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATgag                                <  2:6288407/93‑1 (MQ=255)

                                                         ccTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATgag                                <  2:4878193/93‑1 (MQ=255)

                                                         ccTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATgag                                <  1:2551356/93‑1 (MQ=255)

                                                           tAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGaa                              >  1:4504959/1‑93 (MQ=255)

                                                            aaTGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGaaa                             <  2:2532774/93‑1 (MQ=255)

                                                              tGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGCAAAt                           >  1:5060138/1‑93 (MQ=255)

                                                              tGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAAt                           <  2:2792566/93‑1 (MQ=255)

                                                              tGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAAt                           <  2:2876890/93‑1 (MQ=255)

                                                               ggTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATa                          <  2:1775071/93‑1 (MQ=255)

                                                                gTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAg                         <  1:1912517/93‑1 (MQ=255)

                                                                gTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAg                         <  2:3874442/93‑1 (MQ=255)

                                                                 tACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGt                        <  2:2308507/93‑1 (MQ=255)

                                                                 tACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGt                        >  1:467689/1‑93 (MQ=255)

                                                                 tACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGt                        <  2:4293959/93‑1 (MQ=255)

                                                                  aCTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGtt                       <  1:7984/93‑1 (MQ=255)

                                                                    tGAGAAAGTATCAGCTTATCGTGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTaa                     >  2:6064938/1‑93 (MQ=255)

                                                                    tGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTaa                     <  2:2357115/93‑1 (MQ=255)

                                                                     gagaAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTaaa                    <  2:5829223/93‑1 (MQ=255)

                                                                     gagaAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTaaa                    >  1:1140215/1‑93 (MQ=255)

                                                                      agaAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTaaaa                   <  1:1750797/93‑1 (MQ=255)

                                                                       gaAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAg                  <  2:3401812/93‑1 (MQ=255)

                                                                         aaGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTa                <  2:4200101/93‑1 (MQ=255)

                                                                          ggTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTaa               >  1:5940706/2‑93 (MQ=255)

                                                                           gTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTaaa              <  2:1497888/93‑1 (MQ=255)

                                                                           gTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTaaa              <  2:616058/93‑1 (MQ=255)

                                                                              tCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGAt           <  1:630846/93‑1 (MQ=255)

                                                                               cAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATa          <  1:1027123/93‑1 (MQ=255)

                                                                               cAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATa          <  2:3149917/93‑1 (MQ=255)

                                                                                aGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATaa         <  2:5584096/93‑1 (MQ=255)

                                                                                aGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATaa         <  2:1219701/93‑1 (MQ=255)

                                                                                aGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATaa         >  1:1109856/1‑93 (MQ=255)

                                                                                  cTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACa       >  2:1855313/1‑93 (MQ=255)

                                                                                  cTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACa       <  1:1627633/93‑1 (MQ=255)

                                                                                   ttATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACaa      <  2:4431979/93‑1 (MQ=255)

                                                                                   ttATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACaa      >  1:2218931/1‑93 (MQ=255)

                                                                                    tATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAat     >  1:5293585/1‑93 (MQ=255)

                                                                                       cATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATc  <  2:5368815/93‑1 (MQ=255)

                                                                                       cATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATc  <  1:1260532/93‑1 (MQ=255)

TCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATC  >  NC_000913/3620762‑3620941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGT  >  NC_000913/3620759‑3620945

TTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATG                                                                                               >  SRR4302533.878864/1‑94 (MQ=60)

  CTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCT                                                                                             >  SRR4302533.3638435/1‑94 (MQ=60)

  CTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCT                                                                                             >  SRR4302533.6203773/1‑94 (MQ=60)

   TCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTC                                                                                            <  SRR4302533.5673813/94‑1 (MQ=60)

   TCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTC                                                                                            <  SRR4302533.6086940/94‑1 (MQ=60)

     AACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTAGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCAT                                                                                          <  SRR4302533.4761627/94‑1 (MQ=60)

        AGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGT                                                                                       >  SRR4302533.4489849/1‑94 (MQ=60)

        AGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGT                                                                                       >  SRR4302533.6121690/1‑94 (MQ=60)

         GCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTG                                                                                      <  SRR4302533.404279/94‑1 (MQ=60)

            CCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAG                                                                                   <  SRR4302533.4309608/94‑1 (MQ=60)

              TAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGAT                                                                                 <  SRR4302533.898950/94‑1 (MQ=60)

              TAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGAT                                                                                 <  SRR4302533.3171370/94‑1 (MQ=60)

              TAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGAT                                                                                 >  SRR4302533.1481518/1‑94 (MQ=60)

              TAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGAT                                                                                 >  SRR4302533.2288938/1‑94 (MQ=60)

               AACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATA                                                                                >  SRR4302533.3959861/1‑94 (MQ=60)

                ACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAG                                                                               <  SRR4302533.905350/94‑1 (MQ=60)

                ACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAG                                                                               <  SRR4302533.110009/94‑1 (MQ=60)

                ACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAG                                                                               <  SRR4302533.2773759/94‑1 (MQ=60)

                 CCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGT                                                                              <  SRR4302533.2114603/94‑1 (MQ=60)

                  CGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTC                                                                             >  SRR4302533.5691487/1‑94 (MQ=60)

                   GAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCA                                                                            >  SRR4302533.3704667/1‑94 (MQ=60)

                    AGGAGAAAGAAAAGGATCATATCCGTTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCATCTTATCATGCTCATGGTGCAGATAGTCAT                                                                           >  SRR4302533.3650005/1‑94 (MQ=60)

                    AGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCAT                                                                           <  SRR4302533.1325284/94‑1 (MQ=60)

                     GGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATG                                                                          <  SRR4302533.1071381/94‑1 (MQ=60)

                      GAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGG                                                                         <  SRR4302533.4077988/94‑1 (MQ=60)

                       AGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGA                                                                        >  SRR4302533.6268276/1‑94 (MQ=60)

                       AGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGA                                                                        >  SRR4302533.4796471/1‑94 (MQ=60)

                        GAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAG                                                                       >  SRR4302533.5401638/1‑94 (MQ=60)

                        GAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAG                                                                       <  SRR4302533.6022755/94‑1 (MQ=60)

                        GAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAG                                                                       >  SRR4302533.3285859/1‑94 (MQ=60)

                         AAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGA                                                                      <  SRR4302533.1891233/94‑1 (MQ=60)

                          AAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAA                                                                     <  SRR4302533.4706011/94‑1 (MQ=60)

                          AAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAA                                                                     >  SRR4302533.3957234/1‑94 (MQ=60)

                           AGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAAT                                                                    <  SRR4302533.3809360/94‑1 (MQ=60)

                           AGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAAT                                                                    <  SRR4302533.1131781/94‑1 (MQ=60)

                           AGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAAT                                                                    >  SRR4302533.5996897/1‑94 (MQ=60)

                             AAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATAT                                                                  <  SRR4302533.2150962/94‑1 (MQ=60)

                             AAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATAT                                                                  >  SRR4302533.5149377/1‑94 (MQ=60)

                             AAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATAT                                                                  <  SRR4302533.6071734/94‑1 (MQ=60)

                              AAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATT                                                                 <  SRR4302533.5281736/94‑1 (MQ=60)

                              AAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATT                                                                 >  SRR4302533.3014747/1‑94 (MQ=60)

                               AAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTG                                                                >  SRR4302533.5373264/1‑94 (MQ=60)

                               AAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTG                                                                >  SRR4302533.27367/1‑94 (MQ=60)

                               AAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTG                                                                >  SRR4302533.5599261/1‑94 (MQ=60)

                               AAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTG                                                                <  SRR4302533.5036179/94‑1 (MQ=60)

                                AGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGG                                                               <  SRR4302533.5371826/94‑1 (MQ=60)

                                AGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGG                                                               >  SRR4302533.6070482/1‑94 (MQ=60)

                                AGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGG                                                               <  SRR4302533.1214994/94‑1 (MQ=60)

                                 GGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGG                                                              <  SRR4302533.984160/94‑1 (MQ=60)

                                 GGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGG                                                              >  SRR4302533.1315044/1‑94 (MQ=60)

                                  GATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGA                                                             <  SRR4302533.4104993/94‑1 (MQ=60)

                                  GATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGA                                                             <  SRR4302533.3854381/94‑1 (MQ=60)

                                    TCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACG                                                           >  SRR4302533.1517741/1‑94 (MQ=60)

                                      ATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAA                                                         >  SRR4302533.2665352/1‑94 (MQ=60)

                                      ATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAA                                                         <  SRR4302533.3614102/94‑1 (MQ=60)

                                       TATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAA                                                        <  SRR4302533.5224035/94‑1 (MQ=60)

                                       TATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAA                                                        >  SRR4302533.2975066/1‑94 (MQ=60)

                                       TATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAA                                                        <  SRR4302533.3592255/94‑1 (MQ=60)

                                        ATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAAT                                                       >  SRR4302533.2989556/1‑94 (MQ=60)

                                        ATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAAT                                                       <  SRR4302533.2272293/94‑1 (MQ=60)

                                        ATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAAT                                                       >  SRR4302533.2792871/1‑94 (MQ=60)

                                        ATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAAT                                                       <  SRR4302533.2897659/94‑1 (MQ=60)

                                         TCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATA                                                      >  SRR4302533.3621663/1‑94 (MQ=60)

                                          CCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAT                                                     >  SRR4302533.3990930/1‑94 (MQ=60)

                                          CCAATCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATAT                                                     >  SRR4302533.4349616/1‑94 (MQ=60)

                                           CATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATT                                                    <  SRR4302533.3517537/94‑1 (MQ=60)

                                           CATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATT                                                    <  SRR4302533.4248143/94‑1 (MQ=60)

                                           CATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATT                                                    >  SRR4302533.5598630/1‑94 (MQ=60)

                                            ATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTT                                                   <  SRR4302533.5937729/94‑1 (MQ=60)

                                            ATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTT                                                   >  SRR4302533.2260819/1‑94 (MQ=60)

                                             TTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATTGAGAATATTGGGACGAAATATTTT                                                  >  SRR4302533.5663576/1‑94 (MQ=60)

                                              TCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTC                                                 <  SRR4302533.333344/94‑1 (MQ=60)

                                               CAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCA                                                >  SRR4302533.1406679/1‑94 (MQ=60)

                                               CAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCA                                                >  SRR4302533.4820053/1‑94 (MQ=60)

                                                 ATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGG                                              >  SRR4302533.4347129/1‑94 (MQ=60)

                                                  TAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGT                                             <  SRR4302533.4514689/94‑1 (MQ=60)

                                                     CCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAA                                          <  SRR4302533.5619529/94‑1 (MQ=60)

                                                     CCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAA                                          >  SRR4302533.5784887/1‑94 (MQ=60)

                                                      CCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAG                                         <  SRR4302533.4164620/94‑1 (MQ=60)

                                                      CCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAG                                         >  SRR4302533.4851528/1‑94 (MQ=60)

                                                      CCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAG                                         <  SRR4302533.699079/94‑1 (MQ=60)

                                                       CTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGA                                        <  SRR4302533.5377246/94‑1 (MQ=60)

                                                       CTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGA                                        <  SRR4302533.5635850/94‑1 (MQ=60)

                                                       CTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGA                                        >  SRR4302533.5673290/1‑94 (MQ=60)

                                                        TTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGAT                                       <  SRR4302533.1387004/94‑1 (MQ=60)

                                                        TTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGAT                                       <  SRR4302533.673138/94‑1 (MQ=60)

                                                         TGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAGTATTGGGACGAAATATTTTCAGGTAAAGATG                                      >  SRR4302533.3151967/1‑94 (MQ=60)

                                                         TGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATG                                      <  SRR4302533.175185/94‑1 (MQ=60)

                                                          GCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGA                                     <  SRR4302533.2777878/94‑1 (MQ=60)

                                                          GCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGA                                     >  SRR4302533.3901196/1‑94 (MQ=60)

                                                          GCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGA                                     <  SRR4302533.756811/94‑1 (MQ=60)

                                                          GCCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGA                                     <  SRR4302533.1734168/94‑1 (MQ=60)

                                                           CCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAG                                    >  SRR4302533.1522417/1‑94 (MQ=60)

                                                           CCCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAG                                    >  SRR4302533.3803035/1‑94 (MQ=60)

                                                            CCTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGA                                   <  SRR4302533.2567059/94‑1 (MQ=60)

                                                             CTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAA                                  >  SRR4302533.4532249/1‑94 (MQ=60)

                                                             CTAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAA                                  >  SRR4302533.4205830/1‑94 (MQ=60)

                                                              TAATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAA                                 <  SRR4302533.5713257/94‑1 (MQ=60)

                                                               AATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAA                                <  SRR4302533.4103230/94‑1 (MQ=60)

                                                                ATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGCAAAT                               >  SRR4302533.5090714/1‑94 (MQ=60)

                                                                ATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAAT                               >  SRR4302533.6073681/1‑94 (MQ=60)

                                                                ATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAAT                               <  SRR4302533.4036063/94‑1 (MQ=60)

                                                                ATGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAAT                               <  SRR4302533.2534601/94‑1 (MQ=60)

                                                                 TGGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATA                              >  SRR4302533.466903/1‑94 (MQ=60)

                                                                  GGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAG                             >  SRR4302533.3588649/1‑94 (MQ=60)

                                                                  GGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAG                             <  SRR4302533.3156117/94‑1 (MQ=60)

                                                                  GGTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATAGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAG                             <  SRR4302533.4938897/94‑1 (MQ=60)

                                                                   GTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGT                            >  SRR4302533.470483/1‑94 (MQ=60)

                                                                   GTACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGT                            <  SRR4302533.1924185/94‑1 (MQ=60)

                                                                    TACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTT                           >  SRR4302533.5712797/1‑94 (MQ=60)

                                                                    TACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTT                           >  SRR4302533.1639036/1‑94 (MQ=60)

                                                                     ACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTA                          <  SRR4302533.8055/94‑1 (MQ=60)

                                                                     ACTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTA                          <  SRR4302533.781276/94‑1 (MQ=60)

                                                                      CTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAA                         >  SRR4302533.4480224/1‑94 (MQ=60)

                                                                      CTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAA                         <  SRR4302533.4882576/94‑1 (MQ=60)

                                                                      CTGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAA                         <  SRR4302533.3968719/94‑1 (MQ=60)

                                                                       TGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAA                        <  SRR4302533.2515347/94‑1 (MQ=60)

                                                                       TGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAA                        >  SRR4302533.5290036/1‑94 (MQ=60)

                                                                       TGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAA                        >  SRR4302533.1146998/1‑94 (MQ=60)

                                                                       TGAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAA                        >  SRR4302533.904675/1‑94 (MQ=60)

                                                                        GAGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAA                       <  SRR4302533.3565013/94‑1 (MQ=60)

                                                                         AGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAG                      <  SRR4302533.1761458/94‑1 (MQ=60)

                                                                         AGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAG                      <  SRR4302533.4031070/94‑1 (MQ=60)

                                                                         AGAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAG                      <  SRR4302533.8459/94‑1 (MQ=60)

                                                                          GAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGT                     <  SRR4302533.1561110/94‑1 (MQ=60)

                                                                          GAAAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGT                     <  SRR4302533.1196715/94‑1 (MQ=60)

                                                                            AGGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAA                   >  SRR4302533.5976630/1‑94 (MQ=60)

                                                                            AAGTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAA                   <  SRR4302533.5338111/94‑1 (MQ=60)

                                                                            AAGTATCAGATTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAA                   <  SRR4302533.42294/94‑1 (MQ=60)

                                                                              GTATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAG                 <  SRR4302533.5539304/94‑1 (MQ=60)

                                                                               TATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGA                <  SRR4302533.474452/94‑1 (MQ=60)

                                                                                ATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGAT               <  SRR4302533.5094057/94‑1 (MQ=60)

                                                                                ATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGAT               <  SRR4302533.3426814/94‑1 (MQ=60)

                                                                                ATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGAT               <  SRR4302533.5844395/94‑1 (MQ=60)

                                                                                ATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGAT               <  SRR4302533.800227/94‑1 (MQ=60)

                                                                                ATCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGAT               <  SRR4302533.889351/94‑1 (MQ=60)

                                                                                 TCAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATA              <  SRR4302533.634555/94‑1 (MQ=60)

                                                                                  CAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAA             >  SRR4302533.1116440/1‑94 (MQ=60)

                                                                                  CAGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAA             <  SRR4302533.1033155/94‑1 (MQ=60)

                                                                                   AGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAAC            >  SRR4302533.4529291/1‑94 (MQ=60)

                                                                                   AGCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAAC            <  SRR4302533.2167827/94‑1 (MQ=60)

                                                                                    GCTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACA           <  SRR4302533.18986/94‑1 (MQ=60)

                                                                                     CTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAA          <  SRR4302533.1637492/94‑1 (MQ=60)

                                                                                     CTTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAA          >  SRR4302533.2232630/1‑94 (MQ=60)

                                                                                      TTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAAT         <  SRR4302533.2222431/94‑1 (MQ=60)

                                                                                      TTATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAAT         >  SRR4302533.5325273/1‑94 (MQ=60)

                                                                                       TATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATA        <  SRR4302533.1991806/94‑1 (MQ=60)

                                                                                       TATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATA        >  SRR4302533.5391181/1‑94 (MQ=60)

                                                                                       TATCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATA        <  SRR4302533.4623013/94‑1 (MQ=60)

                                                                                         TCATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATC      <  SRR4302533.4484303/94‑1 (MQ=60)

                                                                                          CATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCA     <  SRR4302533.1268072/94‑1 (MQ=60)

                                                                                          CATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCA     <  SRR4302533.5489358/94‑1 (MQ=60)

                                                                                          CATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCA     >  SRR4302533.2365319/1‑94 (MQ=60)

                                                                                          CATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCA     <  SRR4302533.1133068/94‑1 (MQ=60)

                                                                                          CATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCA     >  SRR4302533.3992007/1‑94 (MQ=60)

                                                                                           ATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAA    <  SRR4302533.1623691/94‑1 (MQ=60)

                                                                                           ATGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAA    <  SRR4302533.4037609/94‑1 (MQ=60)

                                                                                            TGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAG   <  SRR4302533.5248125/94‑1 (MQ=60)

                                                                                            TGCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAG   <  SRR4302533.2879129/94‑1 (MQ=60)

                                                                                             GCTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGT  <  SRR4302533.3095826/94‑1 (MQ=60)

TTCTCAACAGCACCTAACCGAGGAGAAAGAAAAGGATCATATCCATTCAATAGCCCTTGCCCTAATGGTACTGAGAAAGTATCAGCTTATCATACTCATGGTGCAGATAGTCATGGAGAATATTGGGACGAAATATTTTCAGGTAAAGATGAGAAAATAGTTAAAAGTAAAGATAACAATATCAAGT  >  NC_000913/3620759‑3620945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`