Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,666,629 |
T→C |
T64A (ACG→GCG) |
yhjA ← |
putative cytochrome C peroxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,666,629 | 0 | T | C | 99.7%
| 917.0
/ NA
| 288 | T64A (ACG→GCG) | yhjA | putative cytochrome C peroxidase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (151/136); total (151/137) |
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 303 total aligned reads displayed.
TAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGTGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTAC > NC_000913/3666539‑3666718
|
aaaaGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGcgtg < 1:720043/93‑1 (MQ=255)
aaaaGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGcgtg < 2:3003914/93‑1 (MQ=255)
aaaGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTgg > 2:4998538/1‑93 (MQ=255)
aaaGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTgg > 1:5536200/1‑93 (MQ=255)
aaaGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTgg > 2:3575498/1‑93 (MQ=255)
aaGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGc > 2:5604330/1‑93 (MQ=255)
aaGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGc > 2:2054539/1‑93 (MQ=255)
gATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCaa < 1:5227029/93‑1 (MQ=255)
gATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCaa > 1:2309229/1‑93 (MQ=255)
tttATATCCAAGCTTAATGTCGTAATGCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATa > 1:5418260/1‑93 (MQ=255)
tataTCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAATGCGCGTGGCAATAGt < 2:5903717/93‑1 (MQ=255)
atatCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTc > 1:1102506/1‑93 (MQ=255)
atatCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTc < 2:2002680/93‑1 (MQ=255)
tctaaGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCa > 2:4375468/4‑93 (MQ=255)
tCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCa < 2:1026764/93‑1 (MQ=255)
tCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCa > 2:3799195/1‑93 (MQ=255)
tCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCa > 1:312526/1‑93 (MQ=255)
ccAAGCTTAATGTCGTAATCCATCAACTGTCTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCAt > 2:1438400/1‑93 (MQ=255)
cAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATc > 1:1578490/1‑93 (MQ=255)
aaGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATcc > 2:2323558/1‑93 (MQ=255)
gCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCtt < 2:3257555/93‑1 (MQ=255)
cTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCttt > 1:1874796/1‑93 (MQ=255)
cTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCttt < 1:4744163/93‑1 (MQ=255)
ttAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCtttt > 1:5778299/1‑93 (MQ=255)
ttAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCtttt > 2:1258417/1‑93 (MQ=255)
tAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCttttt > 2:2380286/1‑93 (MQ=255)
tAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCttttt < 1:322480/93‑1 (MQ=255)
aaTGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTc < 2:621578/93‑1 (MQ=255)
aTGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTcg > 1:4874796/1‑93 (MQ=255)
aTGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTcg > 2:4118487/1‑93 (MQ=255)
gTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTcgcg > 2:5524273/1‑93 (MQ=255)
tCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCgg > 2:4638714/1‑93 (MQ=255)
tCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCgg < 1:2095558/93‑1 (MQ=255)
tCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCgg > 1:4597258/1‑93 (MQ=255)
tAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGgaga > 2:2556830/1‑93 (MQ=255)
aaTCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGaa > 2:3463516/1‑93 (MQ=255)
aTCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGaaa < 1:2425281/93‑1 (MQ=255)
aTCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGaaa < 2:1105793/93‑1 (MQ=255)
ccATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGc < 2:5625195/93‑1 (MQ=255)
cATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGcc > 1:6284474/1‑93 (MQ=255)
aTCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCt > 2:3506253/1‑93 (MQ=255)
tCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTa > 2:4408828/1‑93 (MQ=255)
tCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTa > 1:5887233/1‑93 (MQ=255)
tCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTa > 1:1488584/1‑93 (MQ=255)
aaCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaa > 1:3329649/1‑93 (MQ=255)
aaCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaa > 2:1517925/1‑93 (MQ=255)
aaCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaa < 1:427185/93‑1 (MQ=255)
aCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaaa < 2:5091842/93‑1 (MQ=255)
aCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaaa < 1:3614264/93‑1 (MQ=255)
aCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaaa < 2:5797496/93‑1 (MQ=255)
aCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaaa < 2:288576/93‑1 (MQ=255)
aCTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTaaaa < 1:4028019/93‑1 (MQ=255)
cTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAc < 2:3533763/93‑1 (MQ=255)
cTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAc > 1:4530207/1‑93 (MQ=255)
cTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAc > 2:3154127/1‑93 (MQ=255)
tGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAcc < 2:5235181/93‑1 (MQ=255)
gTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCt > 1:6159822/1‑93 (MQ=255)
ttCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCtta < 1:534935/93‑1 (MQ=255)
tCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCttat < 1:3747405/93‑1 (MQ=255)
gcgcCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTTGCGGAGAAAGCCTAAAACCttatta > 2:7146/1‑93 (MQ=255)
gcgcCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCttatta < 1:3066182/93‑1 (MQ=255)
gcgcCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCttatta > 2:2635431/1‑93 (MQ=255)
gcgcCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCttatta < 2:1275211/93‑1 (MQ=255)
cgcCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTtattat < 1:5325346/93‑1 (MQ=255)
cgcCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTtattat > 1:5133504/1‑93 (MQ=255)
gcCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTattatt < 2:2154823/93‑1 (MQ=255)
ccAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTAttt > 2:3068161/1‑93 (MQ=255)
ccAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTAttt > 2:4273009/1‑93 (MQ=255)
cAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTAtttt > 2:3214526/1‑93 (MQ=255)
cAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTAtttt > 2:5424386/1‑93 (MQ=255)
aGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTc > 1:2548338/1‑93 (MQ=255)
gAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCAc > 2:4302202/1‑93 (MQ=255)
gAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCAc < 1:4681647/93‑1 (MQ=255)
tataATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGa > 1:1010855/1‑93 (MQ=255)
tataATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGa < 1:1693675/93‑1 (MQ=255)
taataataGGCGGGTAATTCTGCCGAAGGCGTGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGAca < 1:1264169/93‑1 (MQ=255)
taataataGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGAca < 2:4718894/93‑1 (MQ=255)
ataataGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGAcagc > 1:4436661/1‑93 (MQ=255)
aataGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGAcagcag < 2:3377761/93‑1 (MQ=255)
ataGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGa > 2:1498104/1‑93 (MQ=255)
ataGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGa < 1:977212/93‑1 (MQ=255)
aGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATg < 1:3434484/93‑1 (MQ=255)
gggTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTg > 1:1456271/1‑93 (MQ=255)
ggTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGa < 2:1703157/93‑1 (MQ=255)
tAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAAc < 2:2938656/93‑1 (MQ=255)
tAATTCTGCCGAAGGCGCGTGGCAATAGACGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAAc > 1:2504091/1‑93 (MQ=255)
aTTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACAt < 2:5353035/93‑1 (MQ=255)
aTTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACAt > 1:3171653/1‑93 (MQ=255)
aTTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACAt > 2:4936634/1‑93 (MQ=255)
aTTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACAt < 1:1769721/93‑1 (MQ=255)
ttCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATc < 1:4107240/93‑1 (MQ=255)
ttCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATc > 1:2662219/1‑93 (MQ=255)
tGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGc > 2:4811148/1‑93 (MQ=255)
tGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGc < 1:993540/93‑1 (MQ=255)
tGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGc < 1:2938364/93‑1 (MQ=255)
tGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGc < 1:2381693/93‑1 (MQ=255)
gAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGt > 2:5244205/1‑93 (MQ=255)
aaGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGtt > 2:5737642/1‑93 (MQ=255)
aGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGttt > 2:4894365/1‑93 (MQ=255)
ggCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTa > 1:1939633/1‑93 (MQ=255)
|
TAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGTGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTAC > NC_000913/3666539‑3666718
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTTAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGTGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCG > NC_000913/3666536‑3666722
|
GGTTAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGC < SRR4302533.4061098/94‑1 (MQ=60)
GTTAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCG > SRR4302533.3505980/1‑94 (MQ=60)
TTAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGT > SRR4302533.1465408/1‑94 (MQ=60)
TAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTG < SRR4302533.2234074/94‑1 (MQ=60)
TAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTG > SRR4302533.4571427/1‑94 (MQ=60)
TAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTG < SRR4302533.5729416/94‑1 (MQ=60)
AAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGG < SRR4302533.724290/94‑1 (MQ=60)
AAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGG > SRR4302533.4379972/1‑94 (MQ=60)
AAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGG < SRR4302533.1372744/94‑1 (MQ=60)
AAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGG > SRR4302533.5569626/1‑94 (MQ=60)
AAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCA > SRR4302533.1957771/1‑94 (MQ=60)
AGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAA > SRR4302533.5488581/1‑94 (MQ=60)
AGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAA > SRR4302533.1228919/1‑94 (MQ=60)
AGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAA > SRR4302533.2323534/1‑94 (MQ=60)
GATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAAT < SRR4302533.5258480/94‑1 (MQ=60)
ATTTATATCCAAGCTTAATGTCGTAATGCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATA > SRR4302533.5450853/1‑94 (MQ=60)
ATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATA < SRR4302533.3614079/94‑1 (MQ=60)
ATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATA < SRR4302533.1674458/94‑1 (MQ=60)
TTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAG < SRR4302533.3160704/94‑1 (MQ=60)
TTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGT > SRR4302533.1911736/1‑94 (MQ=60)
TATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTC > SRR4302533.1109035/1‑94 (MQ=60)
ATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCG < SRR4302533.3062852/94‑1 (MQ=60)
TATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGC < SRR4302533.4722709/94‑1 (MQ=60)
ATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCA > SRR4302533.5321718/1‑94 (MQ=60)
ATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCA > SRR4302533.1558269/1‑94 (MQ=60)
ATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCA > SRR4302533.314436/1‑94 (MQ=60)
TCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCAT < SRR4302533.949713/94‑1 (MQ=60)
CCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATC > SRR4302533.1587996/1‑94 (MQ=60)
CCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATC > SRR4302533.5843111/1‑94 (MQ=60)
CCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATC < SRR4302533.4599793/94‑1 (MQ=60)
CAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCC < SRR4302533.2104923/94‑1 (MQ=60)
AAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATCGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCT < SRR4302533.4459138/94‑1 (MQ=60)
AAGCTTAATGTCGTAATACATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATACT > SRR4302533.2417304/1‑94 (MQ=60)
AGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTT > SRR4302533.1706577/1‑94 (MQ=60)
AGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTT < SRR4302533.5224110/94‑1 (MQ=60)
GCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTT > SRR4302533.1886219/1‑94 (MQ=60)
GCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTT < SRR4302533.5635240/94‑1 (MQ=60)
CTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTT > SRR4302533.911650/1‑94 (MQ=60)
CTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTT > SRR4302533.3315689/1‑94 (MQ=60)
CTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTT > SRR4302533.5813200/1‑94 (MQ=60)
CTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTT > SRR4302533.3273780/1‑94 (MQ=60)
CTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTT < SRR4302533.5374865/94‑1 (MQ=60)
CTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTT < SRR4302533.4772923/94‑1 (MQ=60)
TTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTT > SRR4302533.1336896/1‑94 (MQ=60)
TAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTC < SRR4302533.4539167/94‑1 (MQ=60)
TAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTC < SRR4302533.324450/94‑1 (MQ=60)
AATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCG > SRR4302533.528767/1‑94 (MQ=60)
AATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCG > SRR4302533.4904331/1‑94 (MQ=60)
AATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCG > SRR4302533.1901017/1‑94 (MQ=60)
ATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGC > SRR4302533.6224909/1‑94 (MQ=60)
GTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGG > SRR4302533.4625106/1‑94 (MQ=60)
TCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGA < SRR4302533.2108462/94‑1 (MQ=60)
GTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGA > SRR4302533.2539928/1‑94 (MQ=60)
AATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGGAA > SRR4302533.1024551/1‑94 (MQ=60)
ATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAG < SRR4302533.4685871/94‑1 (MQ=60)
ATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAG < SRR4302533.2440253/94‑1 (MQ=60)
CCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCC < SRR4302533.6279347/94‑1 (MQ=60)
CCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCC > SRR4302533.6321975/1‑94 (MQ=60)
CCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCC < SRR4302533.4216272/94‑1 (MQ=60)
CATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCT < SRR4302533.3093267/94‑1 (MQ=60)
CATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCT < SRR4302533.2910824/94‑1 (MQ=60)
ATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTA > SRR4302533.5922802/1‑94 (MQ=60)
ATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTA > SRR4302533.1497562/1‑94 (MQ=60)
ATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTA > SRR4302533.4801014/1‑94 (MQ=60)
ATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTA < SRR4302533.3391110/94‑1 (MQ=60)
TCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAA < SRR4302533.1828474/94‑1 (MQ=60)
CAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAA > SRR4302533.2613653/1‑94 (MQ=60)
CAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAA > SRR4302533.3350229/1‑94 (MQ=60)
AACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAA < SRR4302533.429733/94‑1 (MQ=60)
AACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAA > SRR4302533.6344027/1‑94 (MQ=60)
ACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAC < SRR4302533.3636503/94‑1 (MQ=60)
ACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAC > SRR4302533.4557640/1‑94 (MQ=60)
ACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAC < SRR4302533.403931/94‑1 (MQ=60)
ACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAC < SRR4302533.4052537/94‑1 (MQ=60)
ACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAAC > SRR4302533.4058034/1‑94 (MQ=60)
CTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACC > SRR4302533.1767260/1‑94 (MQ=60)
TGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCT < SRR4302533.349423/94‑1 (MQ=60)
TGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCT > SRR4302533.6196867/1‑94 (MQ=60)
TTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTAT < SRR4302533.538114/94‑1 (MQ=60)
TCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATT < SRR4302533.3770381/94‑1 (MQ=60)
TCGCGCCAGGAATATAATAATAGGCGCGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATT > SRR4302533.3115094/1‑94 (MQ=60)
CGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTA < SRR4302533.3173518/94‑1 (MQ=60)
GCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTAT > SRR4302533.5164515/1‑94 (MQ=60)
GCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTAT < SRR4302533.3085016/94‑1 (MQ=60)
GCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTAT > SRR4302533.5935416/1‑94 (MQ=60)
CGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATT < SRR4302533.5357259/94‑1 (MQ=60)
GCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTT < SRR4302533.5429457/94‑1 (MQ=60)
GCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTT > SRR4302533.1553439/1‑94 (MQ=60)
CCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTT < SRR4302533.1494049/94‑1 (MQ=60)
CCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTT > SRR4302533.3766275/1‑94 (MQ=60)
CAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTC > SRR4302533.3666446/1‑94 (MQ=60)
CAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTC > SRR4302533.2564023/1‑94 (MQ=60)
AGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCA > SRR4302533.4859558/1‑94 (MQ=60)
GGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCAC < SRR4302533.5841221/94‑1 (MQ=60)
GGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCAC > SRR4302533.5491566/1‑94 (MQ=60)
GAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACT < SRR4302533.4710015/94‑1 (MQ=60)
GAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACT > SRR4302533.2393895/1‑94 (MQ=60)
GAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACT < SRR4302533.1059590/94‑1 (MQ=60)
GAATATAATAATAGGCGGGTAAGTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACT < SRR4302533.1855215/94‑1 (MQ=60)
ATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGA > SRR4302533.4813488/1‑94 (MQ=60)
ATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGA < SRR4302533.6054784/94‑1 (MQ=60)
ATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGA > SRR4302533.2551940/1‑94 (MQ=60)
ATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGA > SRR4302533.1016769/1‑94 (MQ=60)
ATATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGA < SRR4302533.2965383/94‑1 (MQ=60)
TATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGAC < SRR4302533.1703935/94‑1 (MQ=60)
ATAATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACA < SRR4302533.5362661/94‑1 (MQ=60)
TAATAATAGGCGGGTAATTCTGCCGAAGGCGTGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAG < SRR4302533.1271735/94‑1 (MQ=60)
AATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGC > SRR4302533.5394909/1‑94 (MQ=60)
AATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGC > SRR4302533.4463481/1‑94 (MQ=60)
AATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGC > SRR4302533.5010709/1‑94 (MQ=60)
ATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCA < SRR4302533.4703855/94‑1 (MQ=60)
ATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCA > SRR4302533.4736928/1‑94 (MQ=60)
ATAATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCA > SRR4302533.5064638/1‑94 (MQ=60)
AATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGA < SRR4302533.1652513/94‑1 (MQ=60)
ATAGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGAT < SRR4302533.982944/94‑1 (MQ=60)
ATAGACGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGAT < SRR4302533.243082/94‑1 (MQ=60)
AGGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGC < SRR4302533.3455699/94‑1 (MQ=60)
GGCGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCC > SRR4302533.264257/1‑94 (MQ=60)
CGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTG < SRR4302533.2124585/94‑1 (MQ=60)
CGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTG > SRR4302533.991725/1‑94 (MQ=60)
CGGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTG > SRR4302533.1465052/1‑94 (MQ=60)
GGGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGA < SRR4302533.337418/94‑1 (MQ=60)
GGTAATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAC > SRR4302533.3225589/1‑94 (MQ=60)
GTAATTCTGCCGAAGGCGCGTGGCAATAGACGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAAC > SRR4302533.2519530/1‑94 (MQ=60)
AATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACAT > SRR4302533.3191175/1‑94 (MQ=60)
AATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACAT > SRR4302533.402503/1‑94 (MQ=60)
ATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATC < SRR4302533.1780497/94‑1 (MQ=60)
ATTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATC > SRR4302533.2678563/1‑94 (MQ=60)
TTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCG > SRR4302533.4554000/1‑94 (MQ=60)
TTCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCG < SRR4302533.4132213/94‑1 (MQ=60)
TCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGG > SRR4302533.2744669/1‑94 (MQ=60)
TCTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACAGACAGCAGATGCCTGAACATCGG < SRR4302533.994253/94‑1 (MQ=60)
CTGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGC < SRR4302533.5224665/94‑1 (MQ=60)
TGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCC < SRR4302533.999347/94‑1 (MQ=60)
TGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCC < SRR4302533.2396424/94‑1 (MQ=60)
TGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCC > SRR4302533.2468280/1‑94 (MQ=60)
TGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCC < SRR4302533.24776/94‑1 (MQ=60)
TGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCC < SRR4302533.4177463/94‑1 (MQ=60)
TGCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCC < SRR4302533.2956319/94‑1 (MQ=60)
GCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCT < SRR4302533.2376921/94‑1 (MQ=60)
GCCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCT > SRR4302533.1222536/1‑94 (MQ=60)
CCGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTG < SRR4302533.4064101/94‑1 (MQ=60)
CGAAGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGT < SRR4302533.639402/94‑1 (MQ=60)
AGGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTA > SRR4302533.1951464/1‑94 (MQ=60)
GGCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTAC < SRR4302533.3197207/94‑1 (MQ=60)
GCGCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACT > SRR4302533.2029012/1‑94 (MQ=60)
GCGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGC > SRR4302533.1115661/1‑94 (MQ=60)
CGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCG < SRR4302533.4260107/94‑1 (MQ=60)
CGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCG < SRR4302533.3962957/94‑1 (MQ=60)
|
GGTTAAAAGATTTATATCCAAGCTTAATGTCGTAATCCATCAACTGTTTCGCGCCAGGAATATAATAATAGGCGGGTAATTCTGCCGAAGGCGTGTGGCAATAGTCGCATCCTTTTTCGCGGAGAAAGCCTAAAACCTTATTATTTTCACTGACAGCAGATGCCTGAACATCGGCCTGTTTACTGCG > NC_000913/3666536‑3666722
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
