Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,678,204	G→A	P456L (CCG→CTG)	yhjJ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,678,204	0	G	A	100.0%	1003.2 / NA	268	P456L (CCG→CTG)	yhjJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (125/143); total (125/143)

Only 100 of 271 total aligned reads displayed.

TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTA  >  NC_000913/3678114‑3678293

tCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGc                                                                                         >  2:3246834/1‑93 (MQ=255)

    ccGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGc                                                                                     >  2:36235/1‑93 (MQ=255)

     cGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCTAGCTCGct                                                                                    >  1:944773/1‑92 (MQ=255)

     cGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGcc                                                                                    >  2:5904901/1‑93 (MQ=255)

     cGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGcc                                                                                    >  2:5453911/1‑93 (MQ=255)

       tGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCtt                                                                                  >  1:2747761/1‑93 (MQ=255)

        ggCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCttt                                                                                 <  1:5365130/93‑1 (MQ=255)

            aCAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGc                                                                             >  2:136367/1‑93 (MQ=255)

               gagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgc                                                                          >  2:448094/1‑93 (MQ=255)

               gagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgc                                                                          >  2:4697819/1‑93 (MQ=255)

                agGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgca                                                                         <  2:2778709/93‑1 (MQ=255)

                 ggtggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgtag                                                                        >  2:5330705/1‑93 (MQ=255)

                 ggtggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcag                                                                        >  1:3019637/1‑93 (MQ=255)

                  gtggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcagc                                                                       <  2:2624816/93‑1 (MQ=255)

                   tggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGTTCGCCTTTCGGCTgcagca                                                                      <  2:6121035/93‑1 (MQ=255)

                    ggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGcagcag                                                                     <  2:357302/93‑1 (MQ=255)

                     gtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGt                                                                    <  1:6070183/93‑1 (MQ=255)

                     gtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGt                                                                    <  1:468283/93‑1 (MQ=255)

                        gCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTAtt                                                                 >  1:5866967/1‑93 (MQ=255)

                        gCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTAtt                                                                 <  1:3871117/93‑1 (MQ=255)

                         cAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATACCAGCTCGCCTTTCGGCTGCAGCAGTATTa                                                                >  2:1505195/1‑93 (MQ=255)

                          aGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTaa                                                               <  2:5920232/93‑1 (MQ=255)

                          aGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTaa                                                               >  1:74235/1‑93 (MQ=255)

                           gcggcgGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                              >  1:5800076/1‑93 (MQ=255)

                           gcggcgGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                              >  1:3281642/1‑93 (MQ=255)

                           gcggcgGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                              >  1:4896391/1‑93 (MQ=255)

                           gcggcgGTAGATGGGGCCATGATTTGATCCCAGACCGCATGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                              <  1:4528883/93‑1 (MQ=255)

                             ggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGc                                                            <  2:2279973/93‑1 (MQ=255)

                               cggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCa                                                          <  1:6128862/93‑1 (MQ=255)

                               cggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCa                                                          >  1:5505224/1‑93 (MQ=255)

                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                        <  2:1107225/93‑1 (MQ=255)

                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                        >  1:1477680/1‑93 (MQ=255)

                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                        <  1:5647686/93‑1 (MQ=255)

                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                     <  1:6147588/93‑1 (MQ=255)

                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                     <  2:1617164/93‑1 (MQ=255)

                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                     <  1:5077607/93‑1 (MQ=255)

                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                    <  2:4332032/93‑1 (MQ=255)

                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                    >  2:3019194/1‑93 (MQ=255)

                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                   >  2:6155884/1‑93 (MQ=255)

                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                   <  2:3960847/93‑1 (MQ=255)

                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                   <  2:4105482/93‑1 (MQ=255)

                                       ggggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTc                                                  <  1:1895069/93‑1 (MQ=255)

                                        gggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCg                                                 >  2:1717541/1‑93 (MQ=255)

                                         ggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGa                                                <  2:569874/93‑1 (MQ=255)

                                         ggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGa                                                >  2:4259455/1‑93 (MQ=255)

                                          gCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGAc                                               <  1:3194252/93‑1 (MQ=255)

                                           ccATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTTGACa                                              >  2:5569283/1‑93 (MQ=255)

                                           ccATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACa                                              >  2:490363/1‑93 (MQ=255)

                                            cATGATTTGATCCTAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACaa                                             >  1:3745616/1‑93 (MQ=255)

                                             aTGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAAc                                            >  1:3466448/1‑93 (MQ=255)

                                             aTGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAAc                                            >  2:5065548/1‑93 (MQ=255)

                                              tGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGGCAACt                                           <  2:5416197/93‑1 (MQ=255)

                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                        >  1:4608457/1‑93 (MQ=255)

                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                        >  1:401631/1‑93 (MQ=255)

                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTTTTAACGCCATATCATTCGACAACTGTTg                                       <  2:4004890/93‑1 (MQ=255)

                                                    gATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAc                                     <  1:2648542/93‑1 (MQ=255)

                                                    gATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAc                                     <  2:2496933/93‑1 (MQ=255)

                                                    gATACCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAc                                     <  1:4253262/93‑1 (MQ=255)

                                                     aTCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACg                                    >  2:5222726/1‑93 (MQ=255)

                                                      tCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGc                                   <  2:3735676/93‑1 (MQ=255)

                                                       cccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCa                                  <  1:1161976/93‑1 (MQ=255)

                                                        ccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAg                                 <  2:2570631/93‑1 (MQ=255)

                                                         cAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGa                                >  2:2112342/1‑93 (MQ=255)

                                                          aGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAt                               >  1:1430498/1‑93 (MQ=255)

                                                          aGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATAATTCGACAACTGTTGACGCAGAt                               >  1:1001809/1‑93 (MQ=255)

                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                              >  1:1508983/1‑93 (MQ=255)

                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                              >  2:5791738/1‑93 (MQ=255)

                                                            aCCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATcc                             <  2:281330/93‑1 (MQ=255)

                                                             ccGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCt                            >  2:1858388/1‑93 (MQ=255)

                                                              cGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTg                           >  1:30488/1‑93 (MQ=255)

                                                              cGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTg                           <  2:3830818/93‑1 (MQ=255)

                                                                  tGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAttt                       <  1:1790025/93‑1 (MQ=255)

                                                                   gCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTa                      >  1:3125589/1‑93 (MQ=255)

                                                                   gCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTa                      <  1:4364727/93‑1 (MQ=255)

                                                                    cAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTaa                     <  2:252851/93‑1 (MQ=255)

                                                                     aaCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAc                    >  1:2067687/1‑93 (MQ=255)

                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                   <  2:893368/93‑1 (MQ=255)

                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                   <  1:337635/93‑1 (MQ=255)

                                                                       cGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGTTTTAACAt                  >  2:598489/1‑93 (MQ=255)

                                                                       cGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAt                  <  2:1243956/93‑1 (MQ=255)

                                                                        gCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtc                 <  1:5846852/93‑1 (MQ=255)

                                                                        gCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtc                 <  1:2791247/93‑1 (MQ=255)

                                                                         cTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtct                >  2:3193216/1‑93 (MQ=255)

                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc               >  2:2945489/1‑93 (MQ=255)

                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc               >  1:2429964/1‑93 (MQ=255)

                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc               >  1:2277388/1‑93 (MQ=255)

                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc               >  2:3540827/1‑93 (MQ=255)

                                                                           ttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATctct              >  2:1261930/1‑93 (MQ=255)

                                                                           ttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATctct              >  2:5157681/1‑93 (MQ=255)

                                                                             taTGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAc            <  1:671218/92‑1 (MQ=255)

                                                                             cATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAc            <  1:503177/93‑1 (MQ=255)

                                                                              aTGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAcc           >  1:23125/1‑93 (MQ=255)

                                                                               tGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATACTGATTTAACATCTCTACCg          >  1:983645/1‑93 (MQ=255)

                                                                                gTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGt         >  1:1339172/1‑93 (MQ=255)

                                                                                 ttAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTc        <  1:5768627/93‑1 (MQ=255)

                                                                                 ttAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTc        >  2:721364/1‑93 (MQ=255)

                                                                                   aaaTTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAg      <  1:164559/93‑1 (MQ=255)

                                                                                     aTTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGc    <  1:2673399/93‑1 (MQ=255)

                                                                                      ttCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCt   >  2:4140082/1‑93 (MQ=255)

                                                                                      ttCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCt   >  1:426696/1‑93 (MQ=255)

TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTA  >  NC_000913/3678114‑3678293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAA  >  NC_000913/3678111‑3678297

ACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCA                                                                                               <  SRR4302533.5254647/94‑1 (MQ=60)

 CGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAG                                                                                              <  SRR4302533.3245277/94‑1 (MQ=60)

 CGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAG                                                                                              <  SRR4302533.86621/94‑1 (MQ=60)

 CGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAG                                                                                              <  SRR4302533.1478238/94‑1 (MQ=60)

 CGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAG                                                                                              <  SRR4302533.1979821/94‑1 (MQ=60)

  GTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGC                                                                                             <  SRR4302533.262382/94‑1 (MQ=60)

   TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCT                                                                                            >  SRR4302533.56477/1‑94 (MQ=60)

   TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCT                                                                                            <  SRR4302533.4379515/94‑1 (MQ=60)

    CATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTC                                                                                           >  SRR4302533.3208518/1‑94 (MQ=60)

    CATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTC                                                                                           <  SRR4302533.5091864/94‑1 (MQ=60)

        CGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCT                                                                                       <  SRR4302533.5211878/94‑1 (MQ=60)

        CGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCT                                                                                       >  SRR4302533.6110989/1‑94 (MQ=60)

         GTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTT                                                                                      >  SRR4302533.2764606/1‑94 (MQ=60)

          TGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTT                                                                                     <  SRR4302533.2176143/94‑1 (MQ=60)

           GGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTC                                                                                    <  SRR4302533.3421044/94‑1 (MQ=60)

           GGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTC                                                                                    <  SRR4302533.5397359/94‑1 (MQ=60)

           GGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTC                                                                                    <  SRR4302533.2403676/94‑1 (MQ=60)

            GCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCG                                                                                   <  SRR4302533.6020322/94‑1 (MQ=60)

            GCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCG                                                                                   <  SRR4302533.347654/94‑1 (MQ=60)

            GCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCG                                                                                   <  SRR4302533.5738643/94‑1 (MQ=60)

                 AGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGC                                                                              <  SRR4302533.5772636/94‑1 (MQ=60)

                 AGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGCTAAATTCCAGCTCGCCTTTCGGCTGC                                                                              >  SRR4302533.1538561/1‑94 (MQ=60)

                   AGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAG                                                                            >  SRR4302533.3038123/1‑94 (MQ=60)

                       GGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGT                                                                        <  SRR4302533.1867023/94‑1 (MQ=60)

                       GGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGT                                                                        >  SRR4302533.3148387/1‑94 (MQ=60)

                        GTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGTCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTA                                                                       >  SRR4302533.3394477/1‑94 (MQ=60)

                        GTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTA                                                                       <  SRR4302533.471079/94‑1 (MQ=60)

                        GTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTA                                                                       <  SRR4302533.6106909/94‑1 (MQ=60)

                        GTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTA                                                                       <  SRR4302533.2415766/94‑1 (MQ=60)

                         TCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTAT                                                                      <  SRR4302533.6055341/94‑1 (MQ=60)

                          CGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATT                                                                     >  SRR4302533.5902430/1‑94 (MQ=60)

                           GCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTA                                                                    <  SRR4302533.3894745/94‑1 (MQ=60)

                           GCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTA                                                                    >  SRR4302533.4927032/1‑94 (MQ=60)

                           GCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTA                                                                    <  SRR4302533.197250/94‑1 (MQ=60)

                            CAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAA                                                                   >  SRR4302533.74714/1‑94 (MQ=60)

                            CAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAA                                                                   <  SRR4302533.2771554/94‑1 (MQ=60)

                             AGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAC                                                                  >  SRR4302533.5835115/1‑94 (MQ=60)

                             AGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAC                                                                  >  SRR4302533.3301903/1‑94 (MQ=60)

                             AGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAC                                                                  >  SRR4302533.4926058/1‑94 (MQ=60)

                              GCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCATGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACG                                                                 <  SRR4302533.4556310/94‑1 (MQ=60)

                               CGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTACATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGC                                                                >  SRR4302533.4237366/1‑94 (MQ=60)

                               CGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGC                                                                >  SRR4302533.3790696/1‑94 (MQ=60)

                                GGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCC                                                               >  SRR4302533.2168726/1‑94 (MQ=60)

                                 GCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCA                                                              <  SRR4302533.182336/94‑1 (MQ=60)

                                 GCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCA                                                              >  SRR4302533.5538441/1‑94 (MQ=60)

                                  CGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCAT                                                             <  SRR4302533.6165795/94‑1 (MQ=60)

                                   GGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATA                                                            >  SRR4302533.1486609/1‑94 (MQ=60)

                                    GTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATAT                                                           <  SRR4302533.1481157/94‑1 (MQ=60)

                                    GTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATAT                                                           <  SRR4302533.5681828/94‑1 (MQ=60)

                                       GATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAT                                                        <  SRR4302533.6184598/94‑1 (MQ=60)

                                       GATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAT                                                        <  SRR4302533.5108297/94‑1 (MQ=60)

                                         TGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTC                                                      <  SRR4302533.6110748/94‑1 (MQ=60)

                                          TGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCG                                                     <  SRR4302533.919922/94‑1 (MQ=60)

                                          GGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCG                                                     <  SRR4302533.1906637/94‑1 (MQ=60)

                                             GCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACA                                                  <  SRR4302533.3213904/94‑1 (MQ=60)

                                             GCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACA                                                  <  SRR4302533.2678783/94‑1 (MQ=60)

                                             GCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACA                                                  <  SRR4302533.5502242/94‑1 (MQ=60)

                                              CCATGATTTGATCCTAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAA                                                 >  SRR4302533.3768584/1‑94 (MQ=60)

                                              CCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAA                                                 <  SRR4302533.1510350/94‑1 (MQ=60)

                                               CATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAAC                                                >  SRR4302533.3487843/1‑94 (MQ=60)

                                                ATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACT                                               <  SRR4302533.5346867/94‑1 (MQ=60)

                                                  GATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGT                                             <  SRR4302533.4128041/94‑1 (MQ=60)

                                                   ATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTT                                            >  SRR4302533.404054/1‑94 (MQ=60)

                                                   ATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTT                                            >  SRR4302533.4636366/1‑94 (MQ=60)

                                                   ATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTT                                            >  SRR4302533.5891002/1‑94 (MQ=60)

                                                   ATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTT                                            >  SRR4302533.691953/1‑94 (MQ=60)

                                                    TTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTG                                           <  SRR4302533.5859132/94‑1 (MQ=60)

                                                    TTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTG                                           <  SRR4302533.3284447/94‑1 (MQ=60)

                                                      TGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAC                                         <  SRR4302533.4752305/94‑1 (MQ=60)

                                                      TGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAC                                         <  SRR4302533.1946763/94‑1 (MQ=60)

                                                      TGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAC                                         >  SRR4302533.428865/1‑94 (MQ=60)

                                                       GATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACG                                        <  SRR4302533.2664813/94‑1 (MQ=60)

                                                       GATACCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACG                                        <  SRR4302533.4278916/94‑1 (MQ=60)

                                                        ATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGC                                       >  SRR4302533.4625258/1‑94 (MQ=60)

                                                         TCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCA                                      <  SRR4302533.1499523/94‑1 (MQ=60)

                                                          CCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAG                                     <  SRR4302533.271364/94‑1 (MQ=60)

                                                          CCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAG                                     >  SRR4302533.6274137/1‑94 (MQ=60)

                                                          CCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAG                                     <  SRR4302533.1168948/94‑1 (MQ=60)

                                                            CAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAT                                   <  SRR4302533.164745/94‑1 (MQ=60)

                                                            CAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAT                                   >  SRR4302533.1439146/1‑94 (MQ=60)

                                                            CAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAT                                   <  SRR4302533.4671867/94‑1 (MQ=60)

                                                            CAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAT                                   <  SRR4302533.1292596/94‑1 (MQ=60)

                                                            CAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAT                                   >  SRR4302533.1439145/1‑94 (MQ=60)

                                                            CAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATAATTCGACAACTGTTGACGCAGAT                                   >  SRR4302533.1007659/1‑94 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  >  SRR4302533.1518080/1‑94 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  <  SRR4302533.1437947/94‑1 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  >  SRR4302533.3948561/1‑94 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  <  SRR4302533.4624994/94‑1 (MQ=60)

                                                                CCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTG                               >  SRR4302533.30694/1‑94 (MQ=60)

                                                                 CGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGA                              <  SRR4302533.2937819/94‑1 (MQ=60)

                                                                  GCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAT                             >  SRR4302533.746378/1‑94 (MQ=60)

                                                                  GCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAT                             <  SRR4302533.4740521/94‑1 (MQ=60)

                                                                   CCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATT                            >  SRR4302533.6174923/1‑94 (MQ=60)

                                                                   CCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATT                            >  SRR4302533.4020875/1‑94 (MQ=60)

                                                                    CTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTT                           >  SRR4302533.849538/1‑94 (MQ=60)

                                                                    CTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTT                           >  SRR4302533.307532/1‑94 (MQ=60)

                                                                    CTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTT                           <  SRR4302533.359546/94‑1 (MQ=60)

                                                                     TGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTA                          >  SRR4302533.3144797/1‑94 (MQ=60)

                                                                     TGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTA                          <  SRR4302533.1800911/94‑1 (MQ=60)

                                                                      GCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAA                         <  SRR4302533.4391078/94‑1 (MQ=60)

                                                                       caactttttcttgtaAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAC                        <  SRR4302533.5835825/79‑1 (MQ=60)

                                                                       GAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAC                        <  SRR4302533.967460/94‑1 (MQ=60)

                                                                       CAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAC                        >  SRR4302533.1772429/1‑94 (MQ=60)

                                                                       CAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAC                        >  SRR4302533.2080424/1‑94 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       >  SRR4302533.1216188/1‑94 (MQ=60)

                                                                         ACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAT                      <  SRR4302533.2302494/94‑1 (MQ=60)

                                                                         ACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAT                      <  SRR4302533.4950813/94‑1 (MQ=60)

                                                                         ACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAT                      <  SRR4302533.339698/94‑1 (MQ=60)

                                                                           GCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCT                    <  SRR4302533.5882198/94‑1 (MQ=60)

                                                                           GCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCT                    <  SRR4302533.2808416/94‑1 (MQ=60)

                                                                           GCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCT                    >  SRR4302533.5852903/1‑94 (MQ=60)

                                                                            CTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTC                   >  SRR4302533.2291491/1‑94 (MQ=60)

                                                                            CTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTC                   <  SRR4302533.5809007/94‑1 (MQ=60)

                                                                            CTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTC                   >  SRR4302533.2444985/1‑94 (MQ=60)

                                                                             TTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCT                  >  SRR4302533.618514/1‑94 (MQ=60)

                                                                             TTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCT                  >  SRR4302533.5832677/1‑94 (MQ=60)

                                                                             TTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCACATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCT                  <  SRR4302533.4456574/94‑1 (MQ=60)

                                                                               TCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAC                <  SRR4302533.447497/94‑1 (MQ=60)

                                                                               TCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAC                <  SRR4302533.372441/94‑1 (MQ=60)

                                                                                TATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACC               <  SRR4302533.675182/94‑1 (MQ=60)

                                                                                CATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACC               >  SRR4302533.23280/1‑94 (MQ=60)

                                                                                CATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACC               <  SRR4302533.506166/94‑1 (MQ=60)

                                                                                 ATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCG              >  SRR4302533.5442603/1‑94 (MQ=60)

                                                                                 ATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCG              <  SRR4302533.2498220/94‑1 (MQ=60)

                                                                                 ATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATACTGATTTAACATCTCTACCG              >  SRR4302533.989411/1‑94 (MQ=60)

                                                                                  TGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGT             >  SRR4302533.1347232/1‑94 (MQ=60)

                                                                                    TTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCA           >  SRR4302533.1077832/1‑94 (MQ=60)

                                                                                    TTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCA           <  SRR4302533.5803451/94‑1 (MQ=60)

                                                                                     TAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAG          <  SRR4302533.3131669/94‑1 (MQ=60)

                                                                                     TAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAG          <  SRR4302533.2834416/94‑1 (MQ=60)

                                                                                     TAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAG          <  SRR4302533.334814/94‑1 (MQ=60)

                                                                                      AAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGG         <  SRR4302533.2712851/94‑1 (MQ=60)

                                                                                      AAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGG         <  SRR4302533.165605/94‑1 (MQ=60)

                                                                                       AATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGC        >  SRR4302533.3047719/1‑94 (MQ=60)

                                                                                       AATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGC        <  SRR4302533.2622466/94‑1 (MQ=60)

                                                                                        ATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT       >  SRR4302533.429242/1‑94 (MQ=60)

                                                                                        ATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT       <  SRR4302533.2794035/94‑1 (MQ=60)

                                                                                        ATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT       <  SRR4302533.2689798/94‑1 (MQ=60)

                                                                                         TTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTA      >  SRR4302533.4383813/1‑94 (MQ=60)

                                                                                          TCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTAT     >  SRR4302533.4865234/1‑94 (MQ=60)

                                                                                           CCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATT    <  SRR4302533.3818061/94‑1 (MQ=60)

                                                                                            CAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTA   <  SRR4302533.4131368/94‑1 (MQ=60)

                                                                                            CAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTA   <  SRR4302533.5661488/94‑1 (MQ=60)

                                                                                             AGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAA  <  SRR4302533.4115886/94‑1 (MQ=60)

ACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAA  >  NC_000913/3678111‑3678297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`