Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,729,567	T→C	L270L (TTG→CTG)	xylF →	xylose binding protein transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,729,567	0	T	C	100.0%	918.6 / NA	280	L270L (TTG→CTG)	xylF	xylose binding protein transport system
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (156/124); total (156/124)

Only 100 of 301 total aligned reads displayed.

GCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGAT  >  NC_000913/3729477‑3729656

 cAACCTCCGGCCAGGATGCGGATCTCGCAGGTATTAACCGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTgg                                                                                        <  2:2837911/93‑1 (MQ=255)

  aaTCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAGCGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGc                                                                                       >  1:3080581/1‑93 (MQ=255)

  aaTCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGc                                                                                       >  2:3208153/1‑93 (MQ=255)

  aaTCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGc                                                                                       <  1:5655442/93‑1 (MQ=255)

  aaTCTCCGGCCAGGATGCGGATCTCGCAGGGATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGc                                                                                       >  2:149236/1‑93 (MQ=255)

    tctcCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCaa                                                                                     <  2:3321386/93‑1 (MQ=255)

    tctcCGGCCAGGATGCGGACCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCaa                                                                                     >  2:3592513/1‑93 (MQ=255)

     ctcCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCaaa                                                                                    >  1:6122769/1‑93 (MQ=255)

      tcCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAAt                                                                                   >  2:5665376/1‑93 (MQ=255)

      tcCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAAt                                                                                   >  2:1989804/1‑93 (MQ=255)

        cGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATAc                                                                                 >  1:1756235/1‑93 (MQ=255)

         ggCCAGGAGGCGGACCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTCCTGGCAAATACt                                                                                <  2:4286078/93‑1 (MQ=255)

            cAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGcc                                                                             >  1:2110146/1‑93 (MQ=255)

             aGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCg                                                                            >  2:1674814/1‑93 (MQ=255)

                 tGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGa                                                                        >  2:2424714/1‑93 (MQ=255)

                 tGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGa                                                                        <  1:2902885/93‑1 (MQ=255)

                   cGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGaaa                                                                      >  2:2260256/1‑93 (MQ=255)

                   cGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGaaa                                                                      <  1:6030347/93‑1 (MQ=255)

                   cGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGaaa                                                                      <  2:1224074/93‑1 (MQ=255)

                    ggATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAt                                                                     <  1:1235448/93‑1 (MQ=255)

                     gATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAtt                                                                    <  1:4586244/93‑1 (MQ=255)

                      aTCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTg                                                                   >  1:1097177/1‑93 (MQ=255)

                       tctcGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGc                                                                  >  1:3455359/1‑93 (MQ=255)

                        ctcGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGcc                                                                 <  1:83494/93‑1 (MQ=255)

                         ttgCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCg                                                                >  2:3974286/3‑93 (MQ=255)

                         tcGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCg                                                                <  2:2958423/93‑1 (MQ=255)

                          cGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGt                                                               <  1:4122967/93‑1 (MQ=255)

                          cGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGt                                                               >  2:4386481/1‑93 (MQ=255)

                           gCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGtt                                                              <  1:4045781/93‑1 (MQ=255)

                            cAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTg                                                             >  2:5839985/1‑93 (MQ=255)

                             aGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGa                                                            <  2:1689184/93‑1 (MQ=255)

                             aGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGa                                                            >  2:4346240/1‑93 (MQ=255)

                              ggTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAg                                                           >  2:5497369/1‑93 (MQ=255)

                               gTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGt                                                          >  2:4842405/1‑93 (MQ=255)

                                tATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGtt                                                         <  2:2572972/93‑1 (MQ=255)

                                tATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGtt                                                         <  1:244149/93‑1 (MQ=255)

                                 aTTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAATCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTg                                                        <  1:387206/93‑1 (MQ=255)

                                 aTTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTg                                                        >  2:1055431/1‑93 (MQ=255)

                                 aTTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTg                                                        <  1:3174234/93‑1 (MQ=255)

                                  ttAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTgg                                                       >  1:4371606/1‑93 (MQ=255)

                                       cGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCATAAATTGCCGTTGAGTTGGGCAAt                                                  <  2:5076004/93‑1 (MQ=255)

                                       cGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAAt                                                  <  1:2986090/93‑1 (MQ=255)

                                        gTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGGGTTGGGCAATg                                                 >  2:1324419/1‑93 (MQ=255)

                                         tATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATgg                                                >  2:4796935/1‑93 (MQ=255)

                                         tATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATgg                                                >  1:795955/1‑93 (MQ=255)

                                         tATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATgg                                                >  2:1756079/1‑93 (MQ=255)

                                         tATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATgg                                                <  1:5327503/93‑1 (MQ=255)

                                           ttGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTc                                              <  1:1671564/93‑1 (MQ=255)

                                                gcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGaa                                         >  2:5214399/1‑93 (MQ=255)

                                                gcCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGaa                                         <  1:3993220/93‑1 (MQ=255)

                                                 ccGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAAc                                        <  2:4102455/93‑1 (MQ=255)

                                                  cGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAAcc                                       >  2:139182/1‑93 (MQ=255)

                                                   ggTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCa                                      >  2:4551544/1‑93 (MQ=255)

                                                   ggTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCa                                      <  2:4504618/93‑1 (MQ=255)

                                                    gTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCaa                                     <  1:1378419/93‑1 (MQ=255)

                                                    gTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCaa                                     >  2:5151915/1‑93 (MQ=255)

                                                     tACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCaaa                                    >  2:4313626/1‑93 (MQ=255)

                                                      aCGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCaaaa                                   <  2:5348812/93‑1 (MQ=255)

                                                       cGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAg                                  >  2:3135910/1‑93 (MQ=255)

                                                       cGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAg                                  <  1:4662808/93‑1 (MQ=255)

                                                          aaaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAg                               >  2:1034065/1‑93 (MQ=255)

                                                          aaaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAg                               <  2:663098/93‑1 (MQ=255)

                                                          aaaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAg                               >  2:4146354/1‑93 (MQ=255)

                                                           aaCTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGa                              >  2:3748829/1‑93 (MQ=255)

                                                              tATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATAc                           <  2:3273931/93‑1 (MQ=255)

                                                               aTGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATAcc                          <  1:448640/93‑1 (MQ=255)

                                                                 gACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACcac                        <  1:922402/93‑1 (MQ=255)

                                                                 gACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACcac                        <  1:5470835/93‑1 (MQ=255)

                                                                   cGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCacac                      <  1:3239598/93‑1 (MQ=255)

                                                                    ggTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACt                     >  2:618331/1‑93 (MQ=255)

                                                                     gtgtATAAACCTATTACGTTGCTGGCACATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTg                    >  2:5886967/1‑93 (MQ=255)

                                                                     gtgtATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTg                    <  2:6286396/93‑1 (MQ=255)

                                                                        tataAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaat                 <  2:3543994/93‑1 (MQ=255)

                                                                        tataAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaat                 >  2:6255103/1‑93 (MQ=255)

                                                                        tataAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaat                 >  2:5711372/1‑93 (MQ=255)

                                                                          taAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaataa               >  1:2186729/1‑93 (MQ=255)

                                                                           aaaCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaataat              <  1:2757728/93‑1 (MQ=255)

                                                                           aaaCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGaataat              >  1:5890627/1‑93 (MQ=255)

                                                                            aaCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATg             >  1:4952798/1‑93 (MQ=255)

                                                                            aaCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATg             >  2:5466012/1‑93 (MQ=255)

                                                                             aCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATgg            <  2:824131/93‑1 (MQ=255)

                                                                              ccTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGc           >  1:475872/1‑93 (MQ=255)

                                                                              ccTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTAAATAATGGc           >  1:1817053/1‑93 (MQ=255)

                                                                               cTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGcc          <  1:1528062/93‑1 (MQ=255)

                                                                               cTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGcc          <  2:5649385/93‑1 (MQ=255)

                                                                               cTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGcc          <  2:1823137/93‑1 (MQ=255)

                                                                                tATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCt         >  2:3862549/1‑93 (MQ=255)

                                                                                tATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCt         >  1:4993707/1‑93 (MQ=255)

                                                                                tATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCt         >  2:5947853/1‑93 (MQ=255)

                                                                                 aTTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTg        >  1:1452902/1‑93 (MQ=255)

                                                                                 aTTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTg        >  2:3397382/1‑93 (MQ=255)

                                                                                 aTTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTg        <  1:4220791/93‑1 (MQ=255)

                                                                                   tACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGaa      >  1:2706165/1‑93 (MQ=255)

                                                                                      gttgctGGCAAATACTGCCGCAGAAATTGTCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa   <  1:6211852/93‑1 (MQ=255)

                                                                                      gttgctGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa   >  1:342190/1‑93 (MQ=255)

                                                                                      gttgctGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa   <  1:3685075/93‑1 (MQ=255)

                                                                                      gttgctGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa   >  1:1619164/1‑93 (MQ=255)

                                                                                      gttgctGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa   >  2:2135122/1‑93 (MQ=255)

                                                                                      gttgctGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGa   <  1:5762112/93‑1 (MQ=255)

                                                                                       ttgctgGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGAt  <  1:2639182/93‑1 (MQ=255)

GCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGAT  >  NC_000913/3729477‑3729656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAGCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGTCC  >  NC_000913/3729475‑3729660

TAGCAATCTCCGGCCAGTATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCT                                                                                              <  SRR4302533.2886778/94‑1 (MQ=60)

TAGCAATCTCCGGCCAGGATGCGTATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCT                                                                                              <  SRR4302533.2886777/94‑1 (MQ=60)

TAGCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCT                                                                                              >  SRR4302533.5684614/1‑94 (MQ=60)

 AGCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTG                                                                                             >  SRR4302533.3946039/1‑94 (MQ=60)

 AGCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTG                                                                                             <  SRR4302533.907542/94‑1 (MQ=60)

  GCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGG                                                                                            >  SRR4302533.1842253/1‑94 (MQ=60)

  GCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGG                                                                                            >  SRR4302533.1764247/1‑94 (MQ=60)

  GCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGG                                                                                            <  SRR4302533.991538/94‑1 (MQ=60)

   TAATCTCGGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATGGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGC                                                                                           <  SRR4302533.559983/94‑1 (MQ=60)

   CAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAGCGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGC                                                                                           >  SRR4302533.3099480/1‑94 (MQ=60)

   CAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGC                                                                                           >  SRR4302533.2141623/1‑94 (MQ=60)

   CAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGC                                                                                           >  SRR4302533.2728646/1‑94 (MQ=60)

    AATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCA                                                                                          <  SRR4302533.5689618/94‑1 (MQ=60)

     ATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAA                                                                                         <  SRR4302533.3158205/94‑1 (MQ=60)

      TCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAA                                                                                        >  SRR4302533.6159684/1‑94 (MQ=60)

      TCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAA                                                                                        >  SRR4302533.1651857/1‑94 (MQ=60)

      TCTCCGGCCAGGATGCGGATCTCGCAGGCATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAA                                                                                        <  SRR4302533.6094722/94‑1 (MQ=60)

        TCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATA                                                                                      >  SRR4302533.2867333/1‑94 (MQ=60)

         CCGGTCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATAC                                                                                     <  SRR4302533.1822788/94‑1 (MQ=60)

         CCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATAC                                                                                     <  SRR4302533.4845376/94‑1 (MQ=60)

         CCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATAC                                                                                     >  SRR4302533.1766934/1‑94 (MQ=60)

             CCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCC                                                                                 >  SRR4302533.3253740/1‑94 (MQ=60)

             CCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCC                                                                                 >  SRR4302533.2123161/1‑94 (MQ=60)

              CAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCG                                                                                <  SRR4302533.2904285/94‑1 (MQ=60)

              CAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCG                                                                                >  SRR4302533.5954025/1‑94 (MQ=60)

               AGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGC                                                                               >  SRR4302533.3243672/1‑94 (MQ=60)

                GGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCA                                                                              >  SRR4302533.3736961/1‑94 (MQ=60)

                 GATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAG                                                                             >  SRR4302533.5647069/1‑94 (MQ=60)

                 GATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAG                                                                             >  SRR4302533.1503499/1‑94 (MQ=60)

                  ATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGA                                                                            >  SRR4302533.6306532/1‑94 (MQ=60)

                   TGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAA                                                                           <  SRR4302533.2920715/94‑1 (MQ=60)

                     CGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAT                                                                         <  SRR4302533.6066893/94‑1 (MQ=60)

                     CGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAT                                                                         <  SRR4302533.4172594/94‑1 (MQ=60)

                     CGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAT                                                                         >  SRR4302533.2283138/1‑94 (MQ=60)

                     CGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAAT                                                                         <  SRR4302533.4378489/94‑1 (MQ=60)

                      GGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATT                                                                        <  SRR4302533.1242834/94‑1 (MQ=60)

                       GATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTG                                                                       >  SRR4302533.1103674/1‑94 (MQ=60)

                       GATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTG                                                                       <  SRR4302533.4614026/94‑1 (MQ=60)

                       GATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTG                                                                       >  SRR4302533.149449/1‑94 (MQ=60)

                        ATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGC                                                                      >  SRR4302533.3476686/1‑94 (MQ=60)

                         TCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCC                                                                     >  SRR4302533.998083/1‑94 (MQ=60)

                          CTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCG                                                                    <  SRR4302533.1792651/94‑1 (MQ=60)

                          CTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCG                                                                    <  SRR4302533.84025/94‑1 (MQ=60)

                            CGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTT                                                                  <  SRR4302533.4148001/94‑1 (MQ=60)

                             GCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTG                                                                 <  SRR4302533.4070402/94‑1 (MQ=60)

                             GCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTG                                                                 <  SRR4302533.1398925/94‑1 (MQ=60)

                              CAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGG                                                                >  SRR4302533.1189572/1‑94 (MQ=60)

                                GGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGT                                                              >  SRR4302533.2297850/1‑94 (MQ=60)

                                  TATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTG                                                            <  SRR4302533.245662/94‑1 (MQ=60)

                                  TATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTG                                                            <  SRR4302533.3297301/94‑1 (MQ=60)

                                  TATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTG                                                            <  SRR4302533.4690833/94‑1 (MQ=60)

                                   ATTAAACGTATTGCTGCCGGTGCGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGG                                                           <  SRR4302533.2584861/94‑1 (MQ=60)

                                   ATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAATCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGG                                                           <  SRR4302533.389541/94‑1 (MQ=60)

                                   ATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGG                                                           <  SRR4302533.1604929/94‑1 (MQ=60)

                                   ATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGG                                                           >  SRR4302533.4397996/1‑94 (MQ=60)

                                   ATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGG                                                           >  SRR4302533.4352515/1‑94 (MQ=60)

                                   ATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGG                                                           <  SRR4302533.3464645/94‑1 (MQ=60)

                                   ATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGG                                                           <  SRR4302533.3193768/94‑1 (MQ=60)

                                    TTAAACGGATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGG                                                          <  SRR4302533.3598834/94‑1 (MQ=60)

                                     TAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGC                                                         <  SRR4302533.808686/94‑1 (MQ=60)

                                      AAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCA                                                        >  SRR4302533.1260084/1‑94 (MQ=60)

                                         CGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATG                                                     <  SRR4302533.779129/94‑1 (MQ=60)

                                         CGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATG                                                     <  SRR4302533.5820774/94‑1 (MQ=60)

                                         CGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATG                                                     <  SRR4302533.3004359/94‑1 (MQ=60)

                                         CGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATG                                                     <  SRR4302533.1351963/94‑1 (MQ=60)

                                         CGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATG                                                     <  SRR4302533.2691690/94‑1 (MQ=60)

                                          GTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGG                                                    >  SRR4302533.4543735/1‑94 (MQ=60)

                                          GTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGG                                                    >  SRR4302533.800637/1‑94 (MQ=60)

                                           TATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGT                                                   <  SRR4302533.5359428/94‑1 (MQ=60)

                                             TTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCA                                                 <  SRR4302533.1681667/94‑1 (MQ=60)

                                              TGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAG                                                <  SRR4302533.5946991/94‑1 (MQ=60)

                                                CTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGA                                              >  SRR4302533.113369/1‑94 (MQ=60)

                                                 TGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAA                                             >  SRR4302533.4742655/1‑94 (MQ=60)

                                                  GCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAAC                                            <  SRR4302533.2973714/94‑1 (MQ=60)

                                                  GCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAAC                                            <  SRR4302533.4017532/94‑1 (MQ=60)

                                                  GCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAAC                                            >  SRR4302533.1732363/1‑94 (MQ=60)

                                                   CCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACC                                           >  SRR4302533.5363981/1‑94 (MQ=60)

                                                    CGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCA                                          >  SRR4302533.2772762/1‑94 (MQ=60)

                                                    CGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTACGATGGGCAATGGTCAGGAACCA                                          >  SRR4302533.5033666/1‑94 (MQ=60)

                                                    CGGTACGCAAACTATGACGGTGTATAAACCTATTACGGTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCA                                          >  SRR4302533.4978190/1‑94 (MQ=60)

                                                     GGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAA                                         >  SRR4302533.1898231/1‑94 (MQ=60)

                                                      GTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAA                                        >  SRR4302533.4728356/1‑94 (MQ=60)

                                                      GTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAA                                        <  SRR4302533.84280/94‑1 (MQ=60)

                                                      GTACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAA                                        <  SRR4302533.1386712/94‑1 (MQ=60)

                                                        ACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAGTACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAG                                      >  SRR4302533.4463772/1‑94 (MQ=60)

                                                        ACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAG                                      >  SRR4302533.6156013/1‑94 (MQ=60)

                                                        ACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAG                                      <  SRR4302533.4994172/94‑1 (MQ=60)

                                                        ACGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAG                                      <  SRR4302533.3283564/94‑1 (MQ=60)

                                                         CGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGC                                     >  SRR4302533.5822595/1‑94 (MQ=60)

                                                         CGCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGC                                     <  SRR4302533.4691063/94‑1 (MQ=60)

                                                          GCAAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCA                                    <  SRR4302533.4026127/94‑1 (MQ=60)

                                                            AAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGA                                  >  SRR4302533.573374/1‑94 (MQ=60)

                                                            AAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGA                                  <  SRR4302533.391379/94‑1 (MQ=60)

                                                            AAACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCC‑CAGAAATTGGCGTTGAGGTGGGCAATGGTCAGGAACCAAAAGCAGAT                                 >  SRR4302533.4098616/1‑94 (MQ=60)

                                                             AACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGAT                                 <  SRR4302533.501960/94‑1 (MQ=60)

                                                             AACTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGAT                                 <  SRR4302533.2537037/94‑1 (MQ=60)

                                                             AACTATGACGGGGTATAATCCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATTGTCAGGAACCAAAAGCAGAT                                 <  SRR4302533.303647/94‑1 (MQ=60)

                                                             AACTATGACGGCGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGAT                                 >  SRR4302533.4569133/1‑94 (MQ=60)

                                                               CTATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATAC                               <  SRR4302533.1665462/94‑1 (MQ=60)

                                                                TATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACC                              <  SRR4302533.3124586/94‑1 (MQ=60)

                                                                 ATGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCA                             <  SRR4302533.451323/94‑1 (MQ=60)

                                                                  TGACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCAC                            <  SRR4302533.5408463/94‑1 (MQ=60)

                                                                   GACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACA                           <  SRR4302533.927819/94‑1 (MQ=60)

                                                                   GACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACA                           <  SRR4302533.4411042/94‑1 (MQ=60)

                                                                   GACGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACA                           <  SRR4302533.5503806/94‑1 (MQ=60)

                                                                     CGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACT                         <  SRR4302533.2999461/94‑1 (MQ=60)

                                                                     CGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACT                         <  SRR4302533.3259563/94‑1 (MQ=60)

                                                                     CGGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACT                         >  SRR4302533.5234886/1‑94 (MQ=60)

                                                                      GGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAACAGCAGATACCACACTG                        >  SRR4302533.4653333/1‑94 (MQ=60)

                                                                      GGTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTG                        <  SRR4302533.2656870/94‑1 (MQ=60)

                                                                       GTGTATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGA                       >  SRR4302533.5719526/1‑94 (MQ=60)

                                                                          TATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATA                    >  SRR4302533.833210/1‑94 (MQ=60)

                                                                          TATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATA                    >  SRR4302533.2187499/1‑94 (MQ=60)

                                                                          TATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATA                    <  SRR4302533.4107747/94‑1 (MQ=60)

                                                                           ATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAA                   >  SRR4302533.2200204/1‑94 (MQ=60)

                                                                           ATAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAA                   >  SRR4302533.3581413/1‑94 (MQ=60)

                                                                            TAAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAAT                  >  SRR4302533.5926211/1‑94 (MQ=60)

                                                                             AAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATG                 <  SRR4302533.6170677/94‑1 (MQ=60)

                                                                             AAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATG                 >  SRR4302533.4982797/1‑94 (MQ=60)

                                                                             AAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATG                 <  SRR4302533.2774635/94‑1 (MQ=60)

                                                                             AAACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATG                 <  SRR4302533.1552979/94‑1 (MQ=60)

                                                                               ACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGC               >  SRR4302533.478712/1‑94 (MQ=60)

                                                                               ACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGC               >  SRR4302533.915700/1‑94 (MQ=60)

                                                                               ACCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTAAATAATGGC               >  SRR4302533.1828146/1‑94 (MQ=60)

                                                                                CCTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCC              >  SRR4302533.6239998/1‑94 (MQ=60)

                                                                                 CTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCT             >  SRR4302533.5023983/1‑94 (MQ=60)

                                                                                 CTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCT             >  SRR4302533.4246064/1‑94 (MQ=60)

                                                                                 CTATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCT             <  SRR4302533.1537256/94‑1 (MQ=60)

                                                                                  TATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTG            >  SRR4302533.1461667/1‑94 (MQ=60)

                                                                                   ATTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGA           <  SRR4302533.4246315/94‑1 (MQ=60)

                                                                                    TTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAA          >  SRR4302533.2722765/1‑94 (MQ=60)

                                                                                    TTACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAA          >  SRR4302533.3782421/1‑94 (MQ=60)

                                                                                      ACGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAG        <  SRR4302533.1436765/94‑1 (MQ=60)

                                                                                       CGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGA       >  SRR4302533.1628971/1‑94 (MQ=60)

                                                                                       CGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGA       >  SRR4302533.344278/1‑94 (MQ=60)

                                                                                       CGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGA       <  SRR4302533.4054547/94‑1 (MQ=60)

                                                                                       CGTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGACAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGA       >  SRR4302533.3086995/1‑94 (MQ=60)

                                                                                        GTTGCTGGCAAATACTGCCGCAGAAATTGTCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGAT      <  SRR4302533.6249103/94‑1 (MQ=60)

                                                                                        GTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGAT      <  SRR4302533.3707725/94‑1 (MQ=60)

                                                                                        GTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGAT      <  SRR4302533.5796888/94‑1 (MQ=60)

                                                                                        GTTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGAT      >  SRR4302533.3476485/1‑94 (MQ=60)

                                                                                         TTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATG     <  SRR4302533.2655404/94‑1 (MQ=60)

                                                                                          TGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGT    <  SRR4302533.6149017/94‑1 (MQ=60)

                                                                                           GCTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGTC   <  SRR4302533.122452/94‑1 (MQ=60)

                                                                                            CTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGGCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGTCC  >  SRR4302533.212386/1‑94 (MQ=60)

TAGCAATCTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTATTACGTTGTTGGCAAATACTGCCGCAGAAATTGCCGTTGAGTTGGGCAATGGTCAGGAACCAAAAGCAGATACCACACTGAATAATGGCCTGAAAGATGTCC  >  NC_000913/3729475‑3729660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`