Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,730,104 T→C L92P (CTG→CCG)  xylG → putative ATP‑binding protein of xylose transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,730,1040TC100.0% 939.1 / NA 291L92P (CTG→CCG) xylGputative ATP‑binding protein of xylose transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (144/147);  total (144/147)

Only 100 of 303 total aligned reads displayed.

AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTAC  >  NC_000913/3730014‑3730193
                                                                                          |                                                                                         
aaaTTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCgg                                                                                         >  2:1842882/1‑93 (MQ=255)
aaaTTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCgg                                                                                         <  1:5985079/93‑1 (MQ=255)
aaaTTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCgg                                                                                         <  1:5530583/93‑1 (MQ=255)
aaaTTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCgg                                                                                         >  1:4166994/1‑93 (MQ=255)
  attattTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTg                                                                                       <  1:4062336/93‑1 (MQ=255)
   ttattTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTTGCCCCGGTGa                                                                                      >  2:5316250/1‑93 (MQ=255)
     attTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGaaa                                                                                    <  2:1401298/93‑1 (MQ=255)
     attTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGaaa                                                                                    <  2:4440111/93‑1 (MQ=255)
      tttttGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAg                                                                                   <  1:5070617/93‑1 (MQ=255)
       ttttGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGa                                                                                  <  1:759157/93‑1 (MQ=255)
        tgtGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGaa                                                                                 <  2:1498163/91‑1 (MQ=255)
         ttGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAAt                                                                                <  2:747123/93‑1 (MQ=255)
         ttGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAAt                                                                                >  1:4599800/1‑93 (MQ=255)
          tGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAAtt                                                                               >  2:3107643/1‑93 (MQ=255)
            cGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGa                                                                             <  1:5794207/93‑1 (MQ=255)
             gggAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAc                                                                            >  1:1039570/1‑93 (MQ=255)
             gggAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAc                                                                            >  2:5800246/1‑93 (MQ=255)
              ggAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAcc                                                                           >  2:3060385/1‑93 (MQ=255)
                 gaagaGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTg                                                                        >  2:6146787/1‑93 (MQ=255)
                 gaagaGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGAAATTGGCCCCGGTGAAAAAATTGACCGTg                                                                        >  2:4823997/1‑93 (MQ=255)
                  aagaGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGc                                                                       >  2:252372/1‑93 (MQ=255)
                  aagaGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGc                                                                       >  2:1230425/1‑93 (MQ=255)
                   agagATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCt                                                                      >  2:109546/1‑93 (MQ=255)
                   agagATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCt                                                                      >  1:3292981/1‑93 (MQ=255)
                    gagaTTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTg                                                                     >  1:4917538/1‑93 (MQ=255)
                     agaTTCAGACGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTgg                                                                    >  2:6200623/1‑93 (MQ=255)
                        ttCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGaaa                                                                 >  1:4214997/1‑93 (MQ=255)
                         tCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGaaaa                                                                <  2:901336/93‑1 (MQ=255)
                           aGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAata                                                              >  1:350238/1‑93 (MQ=255)
                           aGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAata                                                              >  1:1275819/1‑93 (MQ=255)
                           aGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAata                                                              <  2:5460372/93‑1 (MQ=255)
                            ggCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAatat                                                             >  1:2778259/1‑93 (MQ=255)
                            ggCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAatat                                                             <  1:1443168/93‑1 (MQ=255)
                             gCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGCCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATc                                                            <  2:3624881/93‑1 (MQ=255)
                               gAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGCATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCtt                                                          <  1:3384146/93‑1 (MQ=255)
                                aGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTc                                                         <  2:3273589/93‑1 (MQ=255)
                                  tCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCt                                                       <  2:3174817/93‑1 (MQ=255)
                                   cacaTCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTg                                                      >  1:4527632/1‑93 (MQ=255)
                                       tCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTa                                                  >  2:3430244/1‑93 (MQ=255)
                                       tCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTa                                                  >  2:6009118/1‑93 (MQ=255)
                                        ccGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTaa                                                 >  2:286210/1‑93 (MQ=255)
                                        ccGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTaa                                                 <  2:4000603/93‑1 (MQ=255)
                                        ccGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTaa                                                 >  2:4596296/1‑93 (MQ=255)
                                         cgcgATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAAc                                                <  1:3724140/93‑1 (MQ=255)
                                          gcgATACCGAACGCAAAGGAATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGCGAATCTCTTCCTGGGTAACg                                               >  1:2055418/1‑93 (MQ=255)
                                           cgATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGa                                              <  2:4333812/93‑1 (MQ=255)
                                             aTACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGaaa                                            <  2:1994652/93‑1 (MQ=255)
                                             aTACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGaaa                                            >  2:2301456/1‑93 (MQ=255)
                                              tACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAAt                                           >  1:116758/1‑93 (MQ=255)
                                                ccGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATaa                                         >  1:547854/1‑93 (MQ=255)
                                                  gAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAAcc                                       >  2:3854532/1‑93 (MQ=255)
                                                  gAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAAcc                                       >  1:5433533/1‑93 (MQ=255)
                                                   aaCGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAAccc                                      >  2:3734994/1‑93 (MQ=255)
                                                   aaCGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAAccc                                      >  2:5680883/1‑93 (MQ=255)
                                                    aCGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCca                                     >  2:5735228/1‑93 (MQ=255)
                                                    aCGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCca                                     <  1:669631/93‑1 (MQ=255)
                                                      gCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCcaca                                   >  1:6199013/1‑93 (MQ=255)
                                                      gCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCcaca                                   >  1:3448933/1‑93 (MQ=255)
                                                      gCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCcaca                                   >  2:5757992/1‑93 (MQ=255)
                                                       cAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACaa                                  >  2:2796067/1‑93 (MQ=255)
                                                       cAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACaa                                  <  2:2184871/93‑1 (MQ=255)
                                                        aaaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGGAAATATCTTCCTGGGTAACGAAATAACCCACAAt                                 >  2:4102199/1‑93 (MQ=255)
                                                        aaaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAt                                 >  2:2340389/1‑93 (MQ=255)
                                                        aaaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAt                                 <  2:2135332/93‑1 (MQ=255)
                                                        aaaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAt                                 <  2:5444998/93‑1 (MQ=255)
                                                         aaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATg                                <  2:4959397/93‑1 (MQ=255)
                                                         aaGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATg                                >  2:5517587/1‑93 (MQ=255)
                                                           ggTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGc                              >  1:1853400/1‑93 (MQ=255)
                                                             tATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAt                            >  1:4122955/1‑93 (MQ=255)
                                                             tATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAt                            <  1:4379758/93‑1 (MQ=255)
                                                             tATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAt                            <  1:4782084/93‑1 (MQ=255)
                                                              aTCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAtt                           <  1:1901771/93‑1 (MQ=255)
                                                               tCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTa                          >  2:5253832/1‑93 (MQ=255)
                                                                 gCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATg                        >  2:5386339/1‑93 (MQ=255)
                                                                  ccATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATgg                       >  2:1011472/1‑93 (MQ=255)
                                                                  ccATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATgg                       >  2:1745844/1‑93 (MQ=255)
                                                                   catcatTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGa                      <  2:1320122/93‑1 (MQ=255)
                                                                   catcatTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGa                      >  1:5410288/1‑93 (MQ=255)
                                                                    atcatTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAt                     >  2:1581729/1‑93 (MQ=255)
                                                                    atcatTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTCGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAt                     >  1:2317629/1‑93 (MQ=255)
                                                                     tcattcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAtt                    >  2:1148713/1‑93 (MQ=255)
                                                                      cattcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTa                   <  2:5069754/93‑1 (MQ=255)
                                                                      cattcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTa                   <  2:83166/93‑1 (MQ=255)
                                                                       attcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAt                  <  1:2420546/93‑1 (MQ=255)
                                                                        ttcatCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATg                 >  2:5955725/1‑93 (MQ=255)
                                                                         tcatcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGa                <  2:4780538/93‑1 (MQ=255)
                                                                         tcatcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGa                <  1:5034391/93‑1 (MQ=255)
                                                                          catcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGAc               >  1:4725042/1‑93 (MQ=255)
                                                                           atcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGAcc              >  1:4335023/1‑93 (MQ=255)
                                                                            tcaGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCt             >  1:4686111/1‑93 (MQ=255)
                                                                             caGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtg            <  2:454785/93‑1 (MQ=255)
                                                                              aGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtga           <  1:3038590/93‑1 (MQ=255)
                                                                              aGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtga           <  1:4161894/93‑1 (MQ=255)
                                                                               ggAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtgat          >  2:3559888/1‑93 (MQ=255)
                                                                                gAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtgatg         <  2:4459471/93‑1 (MQ=255)
                                                                                 aaTTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCtgatga        <  1:3175152/93‑1 (MQ=255)
                                                                                  aTTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGac       <  2:2997359/93‑1 (MQ=255)
                                                                                    tGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGacgc     <  1:3936784/93‑1 (MQ=255)
                                                                                     ggCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGacgct    >  1:1767292/1‑93 (MQ=255)
                                                                                       ccccGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGacgctac  <  2:1870523/93‑1 (MQ=255)
                                                                                          |                                                                                         
AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTAC  >  NC_000913/3730014‑3730193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  NC_000913/3730011‑3730197
                                                                                             |                                                                                             
GCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCC                                                                                               <  SRR4302533.4723461/94‑1 (MQ=60)
 CGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCG                                                                                              >  SRR4302533.6137872/1‑94 (MQ=60)
 CGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCG                                                                                              >  SRR4302533.5299392/1‑94 (MQ=60)
  GAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGG                                                                                             <  SRR4302533.636286/94‑1 (MQ=60)
  GAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGG                                                                                             <  SRR4302533.1816436/94‑1 (MQ=60)
  GAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGG                                                                                             >  SRR4302533.4966078/1‑94 (MQ=60)
  GAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGG                                                                                             >  SRR4302533.4192244/1‑94 (MQ=60)
   AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGT                                                                                            <  SRR4302533.3919794/94‑1 (MQ=60)
   AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGT                                                                                            <  SRR4302533.6021326/94‑1 (MQ=60)
   AAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGT                                                                                            <  SRR4302533.5563972/94‑1 (MQ=60)
    AATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTG                                                                                           <  SRR4302533.5349796/94‑1 (MQ=60)
    AATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTG                                                                                           >  SRR4302533.1368156/1‑94 (MQ=60)
     ATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGA                                                                                          <  SRR4302533.4087065/94‑1 (MQ=60)
       TATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAA                                                                                        <  SRR4302533.4377540/94‑1 (MQ=60)
         TTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGA                                                                                      <  SRR4302533.5101269/94‑1 (MQ=60)
          TTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAA                                                                                     <  SRR4302533.763625/94‑1 (MQ=60)
           TTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAAT                                                                                    <  SRR4302533.4623197/94‑1 (MQ=60)
           TTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAAT                                                                                    >  SRR4302533.4627667/1‑94 (MQ=60)
            TTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATT                                                                                   <  SRR4302533.4708771/94‑1 (MQ=60)
            TTGCGGGAGAAGAGATTAAGGAGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAAAATT                                                                                   <  SRR4302533.2897664/94‑1 (MQ=60)
               CGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAC                                                                                >  SRR4302533.4761245/1‑94 (MQ=60)
               CGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAC                                                                                <  SRR4302533.5829212/94‑1 (MQ=60)
               CGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGAC                                                                                >  SRR4302533.1045681/1‑94 (MQ=60)
                GGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGCACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACC                                                                               >  SRR4302533.5536616/1‑94 (MQ=60)
                GGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACC                                                                               >  SRR4302533.4913150/1‑94 (MQ=60)
                 GGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCG                                                                              <  SRR4302533.940786/94‑1 (MQ=60)
                  GAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGT                                                                             <  SRR4302533.4187526/94‑1 (MQ=60)
                  GAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGT                                                                             <  SRR4302533.3507137/94‑1 (MQ=60)
                   AGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTG                                                                            >  SRR4302533.509805/1‑94 (MQ=60)
                    GAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGC                                                                           >  SRR4302533.739208/1‑94 (MQ=60)
                    GAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGC                                                                           >  SRR4302533.5448692/1‑94 (MQ=60)
                     AAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCT                                                                          >  SRR4302533.407637/1‑94 (MQ=60)
                     AAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCT                                                                          >  SRR4302533.3313307/1‑94 (MQ=60)
                      AGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTG                                                                         >  SRR4302533.1115497/1‑94 (MQ=60)
                      AGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTG                                                                         >  SRR4302533.4947321/1‑94 (MQ=60)
                      AGAGAAGCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATGGGCCCCGGTGAAAGAATTGACCGTGCTG                                                                         <  SRR4302533.3205853/94‑1 (MQ=60)
                        AGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGA                                                                       >  SRR4302533.2110540/1‑94 (MQ=60)
                         GATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAA                                                                      <  SRR4302533.1883253/94‑1 (MQ=60)
                          ATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAA                                                                     >  SRR4302533.4240496/1‑94 (MQ=60)
                           TTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAA                                                                    <  SRR4302533.5514063/94‑1 (MQ=60)
                             CAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATA                                                                  >  SRR4302533.1283490/1‑94 (MQ=60)
                             CAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATA                                                                  >  SRR4302533.352372/1‑94 (MQ=60)
                              AGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATAT                                                                 >  SRR4302533.2795324/1‑94 (MQ=60)
                              AGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATAT                                                                 <  SRR4302533.4175832/94‑1 (MQ=60)
                              AGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATAT                                                                 >  SRR4302533.4169526/1‑94 (MQ=60)
                              AGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATAT                                                                 >  SRR4302533.1815503/1‑94 (MQ=60)
                               GGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATC                                                                <  SRR4302533.1451874/94‑1 (MQ=60)
                                  GAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGCATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTC                                                             <  SRR4302533.3405040/94‑1 (MQ=60)
                                  GAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTC                                                             >  SRR4302533.604635/1‑94 (MQ=60)
                                   AGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCC                                                            <  SRR4302533.2890853/94‑1 (MQ=60)
                                    GTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCT                                                           >  SRR4302533.1148613/1‑94 (MQ=60)
                                     TCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTG                                                          >  SRR4302533.4555050/1‑94 (MQ=60)
                                      CACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGG                                                         >  SRR4302533.4351095/1‑94 (MQ=60)
                                      CACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGG                                                         <  SRR4302533.2360571/94‑1 (MQ=60)
                                       CCATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGG                                                        <  SRR4302533.1179981/94‑1 (MQ=60)
                                        CATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGT                                                       >  SRR4302533.6316021/1‑94 (MQ=60)
                                         ATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTA                                                      >  SRR4302533.4811556/1‑94 (MQ=60)
                                           CCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAAC                                                    >  SRR4302533.3912523/1‑94 (MQ=60)
                                            CGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACG                                                   >  SRR4302533.3057755/1‑94 (MQ=60)
                                            CGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACG                                                   <  SRR4302533.3746989/94‑1 (MQ=60)
                                            CGCGATACCGAACGCAAAGGAATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGCGAATCTCTTCCTGGGTAACG                                                   >  SRR4302533.2068094/1‑94 (MQ=60)
                                             GCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGA                                                  >  SRR4302533.5480195/1‑94 (MQ=60)
                                                ATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAAT                                               >  SRR4302533.117503/1‑94 (MQ=60)
                                                 TACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATA                                              <  SRR4302533.6088913/94‑1 (MQ=60)
                                                 TACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATA                                              <  SRR4302533.4094100/94‑1 (MQ=60)
                                                 TACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATA                                              <  SRR4302533.5200011/94‑1 (MQ=60)
                                                  ACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAA                                             >  SRR4302533.551106/1‑94 (MQ=60)
                                                   CCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAAC                                            >  SRR4302533.5457501/1‑94 (MQ=60)
                                                    CGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACC                                           >  SRR4302533.5466255/1‑94 (MQ=60)
                                                    CGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCATCCTGGGTAACGAAATAACC                                           >  SRR4302533.5373919/1‑94 (MQ=60)
                                                     GAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCC                                          >  SRR4302533.5733993/1‑94 (MQ=60)
                                                      AACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCA                                         <  SRR4302533.587211/94‑1 (MQ=60)
                                                      AACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCA                                         <  SRR4302533.3451435/94‑1 (MQ=60)
                                                       ACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCAC                                        <  SRR4302533.673590/94‑1 (MQ=60)
                                                       ACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCAC                                        <  SRR4302533.1719926/94‑1 (MQ=60)
                                                       ACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCAC                                        >  SRR4302533.4222020/1‑94 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       <  SRR4302533.2241778/94‑1 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       >  SRR4302533.3470226/1‑94 (MQ=60)
                                                        CGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACA                                       >  SRR4302533.6236199/1‑94 (MQ=60)
                                                         GCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAA                                      >  SRR4302533.1857965/1‑94 (MQ=60)
                                                          CAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAT                                     <  SRR4302533.788497/94‑1 (MQ=60)
                                                          CAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAT                                     >  SRR4302533.1969653/1‑94 (MQ=60)
                                                          CAAAGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAAT                                     >  SRR4302533.559971/1‑94 (MQ=60)
                                                             AGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGC                                  >  SRR4302533.1864699/1‑94 (MQ=60)
                                                             AGGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGATGGAAAATATCTTCCTGGGTAACGAAATAACACACAATGGG                                  >  SRR4302533.4581131/1‑94 (MQ=60)
                                                              GGTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCA                                 <  SRR4302533.3059375/94‑1 (MQ=60)
                                                               GTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAT                                <  SRR4302533.3487883/94‑1 (MQ=60)
                                                               GTATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCAT                                >  SRR4302533.4147989/1‑94 (MQ=60)
                                                                TATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATT                               <  SRR4302533.3607803/94‑1 (MQ=60)
                                                                TATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATT                               <  SRR4302533.4406201/94‑1 (MQ=60)
                                                                TATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATT                               <  SRR4302533.4811058/94‑1 (MQ=60)
                                                                 ATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTA                              <  SRR4302533.1913380/94‑1 (MQ=60)
                                                                 ATCGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTA                              >  SRR4302533.1749171/1‑94 (MQ=60)
                                                                   CGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATG                            >  SRR4302533.4777306/1‑94 (MQ=60)
                                                                   CGCCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATG                            <  SRR4302533.4190005/94‑1 (MQ=60)
                                                                     CCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGA                          >  SRR4302533.2349088/1‑94 (MQ=60)
                                                                     CCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGA                          <  SRR4302533.5511438/94‑1 (MQ=60)
                                                                     CCATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGA                          >  SRR4302533.5442815/1‑94 (MQ=60)
                                                                      CATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAT                         >  SRR4302533.4113548/1‑94 (MQ=60)
                                                                      CATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAT                         >  SRR4302533.3228954/1‑94 (MQ=60)
                                                                      CATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAT                         >  SRR4302533.3345708/1‑94 (MQ=60)
                                                                      CATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTCGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGAT                         >  SRR4302533.2331977/1‑94 (MQ=60)
                                                                       ATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATT                        >  SRR4302533.1874763/1‑94 (MQ=60)
                                                                       ATCATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATT                        >  SRR4302533.3334770/1‑94 (MQ=60)
                                                                         CATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAT                      >  SRR4302533.4549810/1‑94 (MQ=60)
                                                                         CATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAT                      <  SRR4302533.2574635/94‑1 (MQ=60)
                                                                         CATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTAT                      >  SRR4302533.3455230/1‑94 (MQ=60)
                                                                          ATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATG                     <  SRR4302533.2435494/94‑1 (MQ=60)
                                                                          ATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATG                     <  SRR4302533.4722097/94‑1 (MQ=60)
                                                                          ATTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATG                     >  SRR4302533.6305061/1‑94 (MQ=60)
                                                                           TTCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGA                    <  SRR4302533.3710083/94‑1 (MQ=60)
                                                                            TCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGAC                   >  SRR4302533.4753691/1‑94 (MQ=60)
                                                                            TCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGAC                   <  SRR4302533.5064886/94‑1 (MQ=60)
                                                                            TCATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGAC                   <  SRR4302533.5064885/94‑1 (MQ=60)
                                                                             CATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACC                  <  SRR4302533.4691992/94‑1 (MQ=60)
                                                                             CATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACC                  >  SRR4302533.1207311/1‑94 (MQ=60)
                                                                             CATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACC                  >  SRR4302533.4361143/1‑94 (MQ=60)
                                                                             CATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACC                  <  SRR4302533.1301722/94‑1 (MQ=60)
                                                                              ATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCT                 >  SRR4302533.4201035/1‑94 (MQ=60)
                                                                              ATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCT                 <  SRR4302533.2019604/94‑1 (MQ=60)
                                                                              ATCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCT                 >  SRR4302533.4714499/1‑94 (MQ=60)
                                                                               TCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTG                <  SRR4302533.2851332/94‑1 (MQ=60)
                                                                               TCAGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTG                <  SRR4302533.4336054/94‑1 (MQ=60)
                                                                                 AGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGAT              <  SRR4302533.3057183/94‑1 (MQ=60)
                                                                                 AGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGAT              <  SRR4302533.4717208/94‑1 (MQ=60)
                                                                                 AGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGAT              <  SRR4302533.4187114/94‑1 (MQ=60)
                                                                                 AGGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGAT              <  SRR4302533.2444360/94‑1 (MQ=60)
                                                                                  GGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATG             <  SRR4302533.762021/94‑1 (MQ=60)
                                                                                  GGAATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATG             <  SRR4302533.508395/94‑1 (MQ=60)
                                                                                    AATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGAC           <  SRR4302533.3194687/94‑1 (MQ=60)
                                                                                    AATTGACCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGAC           <  SRR4302533.4438295/94‑1 (MQ=60)
                                                                                    AATAGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGAC           <  SRR4302533.4389204/94‑1 (MQ=60)
                                                                                     ATTGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACG          >  SRR4302533.5927777/1‑94 (MQ=60)
                                                                                       TGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCT        <  SRR4302533.3960816/94‑1 (MQ=60)
                                                                                       TGGCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCT        >  SRR4302533.1778052/1‑94 (MQ=60)
                                                                                         GCCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTAC      <  SRR4302533.4028325/94‑1 (MQ=60)
                                                                                          CCCCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACG     >  SRR4302533.5571071/1‑94 (MQ=60)
                                                                                            CCGGTGAAAGAATTGACCGTGCTGGAACATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCT   <  SRR4302533.3122158/94‑1 (MQ=60)
                                                                                            CCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCT   >  SRR4302533.5133075/1‑94 (MQ=60)
                                                                                            CCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCT   <  SRR4302533.906530/94‑1 (MQ=60)
                                                                                            CCGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCT   >  SRR4302533.4587158/1‑94 (MQ=60)
                                                                                             CGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  SRR4302533.684951/1‑94 (MQ=60)
                                                                                             CGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  <  SRR4302533.3678235/94‑1 (MQ=60)
                                                                                             CGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  SRR4302533.163863/1‑94 (MQ=60)
                                                                                             CGGTGAAAGAATTGACCGCGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  SRR4302533.3780035/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTATCGCCATCATTCATCAGGAATTGGCCCTGGTGAAAGAATTGACCGTGCTGGAAAATATCTTCCTGGGTAACGAAATAACCCACAATGGCATTATGGATTATGACCTGATGACGCTACGCTG  >  NC_000913/3730011‑3730197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑