Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,754,570	G→A	V295V (GTC→GTT)	yiaY ←	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,754,570	0	G	A	100.0%	929.7 / NA	253	V295V (GTC→GTT)	yiaY	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (115/138); total (115/138)

Only 100 of 265 total aligned reads displayed.

GTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCGACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGC  >  NC_000913/3754480‑3754659

gTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAAc                                                                                         >  2:6015605/1‑93 (MQ=255)

gTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAAc                                                                                         <  1:5339743/93‑1 (MQ=255)

gTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAAc                                                                                         >  1:2356505/1‑93 (MQ=255)

 ttAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACt                                                                                        <  2:5035451/93‑1 (MQ=255)

 ttAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACt                                                                                        >  1:1483635/1‑93 (MQ=255)

   aaTGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACttt                                                                                      <  1:790729/93‑1 (MQ=255)

   aaTGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACttt                                                                                      <  1:1846146/93‑1 (MQ=255)

      gCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCt                                                                                   >  1:3203303/1‑93 (MQ=255)

       cAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTg                                                                                  <  1:5787094/93‑1 (MQ=255)

       cAGGCTTCAGCACCTTCCGCGTCGGTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTg                                                                                  <  2:2099168/93‑1 (MQ=255)

        agccTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGt                                                                                 <  2:1524726/90‑1 (MQ=255)

        aGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGt                                                                                 >  1:3122099/1‑93 (MQ=255)

         ggCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGtt                                                                                >  2:954476/1‑93 (MQ=255)

         ggCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGtt                                                                                >  2:6223784/1‑93 (MQ=255)

         ggCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGtt                                                                                >  2:311371/1‑93 (MQ=255)

          gCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTg                                                                               <  2:2949914/93‑1 (MQ=255)

            ttCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGaa                                                                             >  2:5694668/1‑93 (MQ=255)

               aGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATAc                                                                          >  2:2718352/1‑93 (MQ=255)

               aGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATAc                                                                          <  2:1981891/93‑1 (MQ=255)

                gCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATAcc                                                                         <  1:1724285/93‑1 (MQ=255)

                 cACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCt                                                                        <  1:241503/93‑1 (MQ=255)

                 cACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCt                                                                        <  2:5508875/93‑1 (MQ=255)

                  aCCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTg                                                                       >  2:5321893/1‑93 (MQ=255)

                  aCCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTg                                                                       >  2:2606195/1‑93 (MQ=255)

                  aCCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTg                                                                       >  2:593372/1‑93 (MQ=255)

                   ccTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGa                                                                      <  1:1129895/93‑1 (MQ=255)

                    cTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGaa                                                                     <  1:6059462/93‑1 (MQ=255)

                    cTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGaa                                                                     <  1:509514/93‑1 (MQ=255)

                     ttCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGACTACCTGaaa                                                                    >  2:1352845/1‑92 (MQ=255)

                     ttCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAc                                                                    <  2:5256079/93‑1 (MQ=255)

                     ttCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAc                                                                    >  1:3820697/1‑93 (MQ=255)

                     ttCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAc                                                                    >  1:3993407/1‑93 (MQ=255)

                      tCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACg                                                                   >  1:513996/1‑93 (MQ=255)

                       ccGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGt                                                                  <  2:834835/93‑1 (MQ=255)

                        cgcgTCTTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCGCGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTg                                                                 <  1:5753466/93‑1 (MQ=255)

                         gcgTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGc                                                                <  1:2993249/93‑1 (MQ=255)

                         gcgTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGc                                                                <  2:2225838/93‑1 (MQ=255)

                         gcgTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGc                                                                >  1:2761901/1‑93 (MQ=255)

                            tcgtTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGgc                                                             >  2:2841557/1‑93 (MQ=255)

                            tcgtTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGgc                                                             >  1:5574384/1‑93 (MQ=255)

                             cgtTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGgca                                                            >  1:2134954/1‑93 (MQ=255)

                              gtTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGgcag                                                           <  1:6156731/93‑1 (MQ=255)

                              gtTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGgcag                                                           >  2:4009305/1‑93 (MQ=255)

                              gtTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGgcag                                                           >  1:199313/1‑93 (MQ=255)

                               ttttttCCTGTCACGTTTACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTTCTGTTGGATAACTTGACGTGCGgccgc                                                          >  2:3512321/1‑93 (MQ=255)

                               tttttACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGgcagc                                                          >  2:1139722/1‑93 (MQ=255)

                                 tttACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCaa                                                        >  2:5557813/1‑93 (MQ=255)

                                  ttACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCaaa                                                       >  1:5523446/1‑93 (MQ=255)

                                   tACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCaaaa                                                      >  2:475498/1‑93 (MQ=255)

                                    aCCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAAc                                                     <  1:4626578/93‑1 (MQ=255)

                                    aCCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAAc                                                     <  1:1689432/93‑1 (MQ=255)

                                     ccTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACg                                                    <  1:4699501/93‑1 (MQ=255)

                                      cTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACgg                                                   >  2:1297668/1‑93 (MQ=255)

                                        gTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCg                                                 >  1:391357/1‑93 (MQ=255)

                                        gTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCg                                                 <  1:1439365/93‑1 (MQ=255)

                                           aCGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTta                                              >  1:3756477/1‑93 (MQ=255)

                                            cGTTCACGCCCATTGCGGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtac                                             <  2:4649878/93‑1 (MQ=255)

                                            cGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtac                                             <  1:3330398/93‑1 (MQ=255)

                                              ttCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtacat                                           <  2:2678422/93‑1 (MQ=255)

                                               tCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtacata                                          <  1:571121/93‑1 (MQ=255)

                                               tCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtacata                                          <  2:3984525/93‑1 (MQ=255)

                                                cACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtacatac                                         <  2:3897500/93‑1 (MQ=255)

                                                 aCGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtacataca                                        >  1:3623325/1‑93 (MQ=255)

                                                 aCGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTtacataca                                        >  2:1678120/1‑93 (MQ=255)

                                                  cGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATacac                                       <  1:3369913/93‑1 (MQ=255)

                                                  cGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATacac                                       <  2:642140/93‑1 (MQ=255)

                                                    cccATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATAAACCg                                     >  2:1105405/1‑93 (MQ=255)

                                                     ccATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCgt                                    >  2:5187544/1‑93 (MQ=255)

                                                       aTTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCgtgt                                  >  2:788772/1‑93 (MQ=255)

                                                        ttGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTCTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGtgtg                                 <  1:1052603/93‑1 (MQ=255)

                                                           cAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCa                              >  1:6246828/1‑93 (MQ=255)

                                                            aGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAg                             <  2:2197656/93‑1 (MQ=255)

                                                            aGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAg                             >  2:4141505/1‑93 (MQ=255)

                                                            aGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAg                             >  1:4399743/1‑93 (MQ=255)

                                                             gCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAgg                            >  1:2673102/1‑93 (MQ=255)

                                                              cGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGt                           <  1:2500258/93‑1 (MQ=255)

                                                               ggCACAGTCACGCAGCCGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTAGATACACCGTGTGGCCGGtt                          >  2:4250227/1‑93 (MQ=255)

                                                                 cacaGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGt                        <  2:3455308/93‑1 (MQ=255)

                                                                     gTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGaa                    >  2:4345805/1‑93 (MQ=255)

                                                                      tCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGGGTTACATACACCGTGTGGCAGGTTGTAGaaa                   >  1:2302104/1‑93 (MQ=255)

                                                                      tCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGaaa                   <  2:177275/93‑1 (MQ=255)

                                                                      tCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGaaa                   <  2:2356505/93‑1 (MQ=255)

                                                                       cACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAAc                  <  2:6278530/93‑1 (MQ=255)

                                                                        aCGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAAcc                 >  1:1004089/1‑93 (MQ=255)

                                                                        aCGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAAcc                 <  1:4119235/93‑1 (MQ=255)

                                                                          gCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGc               <  2:499593/93‑1 (MQ=255)

                                                                           cAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGcc              <  1:5199625/93‑1 (MQ=255)

                                                                            aGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGccc             >  2:3042840/1‑93 (MQ=255)

                                                                            aGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGccc             >  2:845181/1‑93 (MQ=255)

                                                                             gACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCa            <  1:5168798/93‑1 (MQ=255)

                                                                              aCGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAg           >  1:5373817/1‑93 (MQ=255)

                                                                               cGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGc          <  1:1214720/93‑1 (MQ=255)

                                                                               cGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGc          <  1:4851085/93‑1 (MQ=255)

                                                                               cGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGc          <  1:4675681/93‑1 (MQ=255)

                                                                               cGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGc          <  2:4949077/93‑1 (MQ=255)

                                                                                gTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCt         <  1:873453/93‑1 (MQ=255)

                                                                                 tGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTg        <  1:1253522/93‑1 (MQ=255)

                                                                                   cAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGt      <  1:5040510/93‑1 (MQ=255)

                                                                                      cggcaACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTgcg   <  1:2202922/93‑1 (MQ=255)

                                                                                      cggcaACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGCTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTgcg   >  2:3661534/1‑93 (MQ=255)

GTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCGACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGC  >  NC_000913/3754480‑3754659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCGTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCGACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCATC  >  NC_000913/3754477‑3754663

GGCGTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCA                                                                                               <  SRR4302533.778673/94‑1 (MQ=60)

GGCGTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCA                                                                                               >  SRR4302533.4405307/1‑94 (MQ=60)

GGCGTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCA                                                                                               >  SRR4302533.5077349/1‑94 (MQ=60)

  CGTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAAC                                                                                             >  SRR4302533.2371074/1‑94 (MQ=60)

  CGTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAAC                                                                                             >  SRR4302533.113709/1‑94 (MQ=60)

   GTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACT                                                                                            <  SRR4302533.5371764/94‑1 (MQ=60)

   GTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACT                                                                                            >  SRR4302533.1492590/1‑94 (MQ=60)

     TAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTT                                                                                          >  SRR4302533.5450456/1‑94 (MQ=60)

      AATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTG                                                                                         <  SRR4302533.1857404/94‑1 (MQ=60)

      AATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTG                                                                                         <  SRR4302533.795384/94‑1 (MQ=60)

       ATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGC                                                                                        <  SRR4302533.5768278/94‑1 (MQ=60)

        TGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCT                                                                                       >  SRR4302533.5090145/1‑94 (MQ=60)

        TGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCT                                                                                       >  SRR4302533.3223018/1‑94 (MQ=60)

        TGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCT                                                                                       >  SRR4302533.1564696/1‑94 (MQ=60)

         GCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTG                                                                                      >  SRR4302533.3992403/1‑94 (MQ=60)

          CAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGT                                                                                     <  SRR4302533.5822054/94‑1 (MQ=60)

          CAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGT                                                                                     >  SRR4302533.3141294/1‑94 (MQ=60)

          CAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGT                                                                                     <  SRR4302533.3149838/94‑1 (MQ=60)

           AGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTT                                                                                    <  SRR4302533.4099640/94‑1 (MQ=60)

           AGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTT                                                                                    <  SRR4302533.614396/94‑1 (MQ=60)

            GGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAAATTTGCTGTTG                                                                                   >  SRR4302533.5533938/1‑94 (MQ=60)

             GCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGA                                                                                  >  SRR4302533.1642387/1‑94 (MQ=60)

               TTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAAT                                                                                <  SRR4302533.2426579/94‑1 (MQ=60)

               TTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAAT                                                                                >  SRR4302533.3433454/1‑94 (MQ=60)

               TTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAAT                                                                                <  SRR4302533.866817/94‑1 (MQ=60)

                TCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATA                                                                               <  SRR4302533.1483171/94‑1 (MQ=60)

                TCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATA                                                                               <  SRR4302533.530956/94‑1 (MQ=60)

                 CAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATAC                                                                              <  SRR4302533.2804066/94‑1 (MQ=60)

                  AGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACC                                                                             >  SRR4302533.4725987/1‑94 (MQ=60)

                  AGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACC                                                                             >  SRR4302533.515117/1‑94 (MQ=60)

                   GCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCT                                                                            <  SRR4302533.1734747/94‑1 (MQ=60)

                    CACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTG                                                                           <  SRR4302533.4789180/94‑1 (MQ=60)

                    CACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTG                                                                           <  SRR4302533.243000/94‑1 (MQ=60)

                    CACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTG                                                                           >  SRR4302533.2343616/1‑94 (MQ=60)

                     CCCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGA                                                                          <  SRR4302533.796616/94‑1 (MQ=60)

                     ACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGA                                                                          >  SRR4302533.5075361/1‑94 (MQ=60)

                      CCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAA                                                                         <  SRR4302533.1136610/94‑1 (MQ=60)

                       CTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAC                                                                        >  SRR4302533.4017720/1‑94 (MQ=60)

                       CTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAC                                                                        <  SRR4302533.5707382/94‑1 (MQ=60)

                       CTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAC                                                                        <  SRR4302533.4375368/94‑1 (MQ=60)

                       CTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAC                                                                        <  SRR4302533.6096144/94‑1 (MQ=60)

                       CTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAC                                                                        <  SRR4302533.3032844/94‑1 (MQ=60)

                       CTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAC                                                                        >  SRR4302533.3844061/1‑94 (MQ=60)

                       CTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAAC                                                                        <  SRR4302533.512542/94‑1 (MQ=60)

                        TTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACG                                                                       >  SRR4302533.4845874/1‑94 (MQ=60)

                        TTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACG                                                                       >  SRR4302533.517051/1‑94 (MQ=60)

                        TTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACG                                                                       >  SRR4302533.244223/1‑94 (MQ=60)

                          CCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGCCGTGCAGCGGCAACTTTTCTGTTGAATACCTGAACGTG                                                                     >  SRR4302533.5177238/1‑94 (MQ=60)

                          CCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTG                                                                     <  SRR4302533.2712565/94‑1 (MQ=60)

                          CCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTG                                                                     <  SRR4302533.2550191/94‑1 (MQ=60)

                           CGCGTCTTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCGCGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGC                                                                    <  SRR4302533.5788177/94‑1 (MQ=60)

                           CGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGC                                                                    >  SRR4302533.2778834/1‑94 (MQ=60)

                           CGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGC                                                                    >  SRR4302533.2125437/1‑94 (MQ=60)

                           CGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGC                                                                    <  SRR4302533.3354298/94‑1 (MQ=60)

                            GCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACGGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCG                                                                   >  SRR4302533.5213522/1‑94 (MQ=60)

                            GCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCG                                                                   <  SRR4302533.3011550/94‑1 (MQ=60)

                             CGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGG                                                                  <  SRR4302533.1252487/94‑1 (MQ=60)

                              GTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGC                                                                 >  SRR4302533.3918710/1‑94 (MQ=60)

                              GTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGC                                                                 >  SRR4302533.5608072/1‑94 (MQ=60)

                              GTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGC                                                                 >  SRR4302533.5615782/1‑94 (MQ=60)

                               TCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCA                                                                >  SRR4302533.2148118/1‑94 (MQ=60)

                                CGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAG                                                               >  SRR4302533.200574/1‑94 (MQ=60)

                                CGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAG                                                               <  SRR4302533.4931071/94‑1 (MQ=60)

                                 GTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGC                                                              <  SRR4302533.6193769/94‑1 (MQ=60)

                                  TTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCA                                                             <  SRR4302533.3287397/94‑1 (MQ=60)

                                  TTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCA                                                             >  SRR4302533.3916855/1‑94 (MQ=60)

                                    TTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAA                                                           >  SRR4302533.5556796/1‑94 (MQ=60)

                                       TCCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACG                                                        <  SRR4302533.1925774/94‑1 (MQ=60)

                                       CCCTGTCACGTGCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACG                                                        <  SRR4302533.3458623/94‑1 (MQ=60)

                                       ACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACG                                                        <  SRR4302533.4654617/94‑1 (MQ=60)

                                       ACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACG                                                        <  SRR4302533.1699667/94‑1 (MQ=60)

                                       ACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACG                                                        <  SRR4302533.3992989/94‑1 (MQ=60)

                                        CCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGG                                                       <  SRR4302533.4727992/94‑1 (MQ=60)

                                        CCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGG                                                       <  SRR4302533.4727991/94‑1 (MQ=60)

                                        CCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGG                                                       <  SRR4302533.1801154/94‑1 (MQ=60)

                                          TGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCG                                                     >  SRR4302533.393728/1‑94 (MQ=60)

                                           GTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGT                                                    <  SRR4302533.1448051/94‑1 (MQ=60)

                                           GTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGT                                                    <  SRR4302533.3762197/94‑1 (MQ=60)

                                            TCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTT                                                   >  SRR4302533.1013038/1‑94 (MQ=60)

                                             CACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTA                                                  >  SRR4302533.3779503/1‑94 (MQ=60)

                                              ACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTAC                                                 <  SRR4302533.2343646/94‑1 (MQ=60)

                                               CGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACA                                                <  SRR4302533.3350984/94‑1 (MQ=60)

                                                  TCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATAC                                             <  SRR4302533.574494/94‑1 (MQ=60)

                                                   CACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACA                                            >  SRR4302533.3645622/1‑94 (MQ=60)

                                                     CGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACC                                          <  SRR4302533.3390726/94‑1 (MQ=60)

                                                      GCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCG                                         >  SRR4302533.5137964/1‑94 (MQ=60)

                                                      GCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCG                                         >  SRR4302533.5383913/1‑94 (MQ=60)

                                                        CCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTG                                       <  SRR4302533.2282752/94‑1 (MQ=60)

                                                         CATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGT                                      >  SRR4302533.2191895/1‑94 (MQ=60)

                                                         CATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGT                                      <  SRR4302533.3697834/94‑1 (MQ=60)

                                                         CATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGG                                      >  SRR4302533.1242181/1‑94 (MQ=60)

                                                          ATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTG                                     <  SRR4302533.6102690/94‑1 (MQ=60)

                                                          ATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTG                                     >  SRR4302533.6246128/1‑94 (MQ=60)

                                                          ATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTG                                     >  SRR4302533.1075041/1‑94 (MQ=60)

                                                           TTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGG                                    >  SRR4302533.594319/1‑94 (MQ=60)

                                                           TTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTCTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGG                                    <  SRR4302533.1058802/94‑1 (MQ=60)

                                                             GCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCA                                  >  SRR4302533.6284212/1‑94 (MQ=60)

                                                             GCAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCA                                  >  SRR4302533.5227410/1‑94 (MQ=60)

                                                              CAGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAG                                 >  SRR4302533.4426306/1‑94 (MQ=60)

                                                              CAGCGGCACAGTCACCCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAG                                 <  SRR4302533.5594567/94‑1 (MQ=60)

                                                               AGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGG                                >  SRR4302533.2128318/1‑94 (MQ=60)

                                                               AGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGG                                >  SRR4302533.2689500/1‑94 (MQ=60)

                                                               AGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGG                                >  SRR4302533.5790345/1‑94 (MQ=60)

                                                               AGCGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGG                                <  SRR4302533.582726/94‑1 (MQ=60)

                                                                 CGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTT                              >  SRR4302533.2920571/1‑94 (MQ=60)

                                                                 CGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTT                              <  SRR4302533.2515681/94‑1 (MQ=60)

                                                                 CGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTT                              <  SRR4302533.1096775/94‑1 (MQ=60)

                                                                 CGGCACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTT                              <  SRR4302533.4500031/94‑1 (MQ=60)

                                                                    CACAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTA                           <  SRR4302533.1704984/94‑1 (MQ=60)

                                                                     ACAGTCACGCAGACGTGCAGCGGCAACTTTGCTATTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAG                          <  SRR4302533.3824274/94‑1 (MQ=60)

                                                                      CAGTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGA                         >  SRR4302533.22179/1‑94 (MQ=60)

                                                                        GTCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGGGTTACATACACCGTGTGGCAGGTTGTAGAAA                       >  SRR4302533.2316367/1‑94 (MQ=60)

                                                                         TCACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAAC                      <  SRR4302533.1299989/94‑1 (MQ=60)

                                                                          CACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACC                     <  SRR4302533.1715308/94‑1 (MQ=60)

                                                                          CACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACC                     >  SRR4302533.1009960/1‑94 (MQ=60)

                                                                          CACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGGTGTAGAAACC                     >  SRR4302533.631199/1‑94 (MQ=60)

                                                                           ACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCG                    <  SRR4302533.4144251/94‑1 (MQ=60)

                                                                           ACGCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCG                    <  SRR4302533.2499820/94‑1 (MQ=60)

                                                                             GCAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCC                  >  SRR4302533.4441406/1‑94 (MQ=60)

                                                                              CAGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCC                 <  SRR4302533.5230973/94‑1 (MQ=60)

                                                                               AGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCA                <  SRR4302533.3053408/94‑1 (MQ=60)

                                                                               AGACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCA                >  SRR4302533.3309240/1‑94 (MQ=60)

                                                                                GACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAG               >  SRR4302533.5406109/1‑94 (MQ=60)

                                                                                GACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAG               <  SRR4302533.1864910/94‑1 (MQ=60)

                                                                                GACGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAG               <  SRR4302533.5199996/94‑1 (MQ=60)

                                                                                  CGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCT             <  SRR4302533.4704017/94‑1 (MQ=60)

                                                                                  CGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCT             <  SRR4302533.4880483/94‑1 (MQ=60)

                                                                                  CGTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCT             <  SRR4302533.1222016/94‑1 (MQ=60)

                                                                                   GTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTG            <  SRR4302533.878583/94‑1 (MQ=60)

                                                                                   GTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTG            >  SRR4302533.4305816/1‑94 (MQ=60)

                                                                                   GTGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTG            <  SRR4302533.4664276/94‑1 (MQ=60)

                                                                                    TGCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGG           <  SRR4302533.1261017/94‑1 (MQ=60)

                                                                                     GCAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGT          <  SRR4302533.2622203/94‑1 (MQ=60)

                                                                                      CAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTG         <  SRR4302533.5071021/94‑1 (MQ=60)

                                                                                      CAGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTG         >  SRR4302533.13683/1‑94 (MQ=60)

                                                                                       AGCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGC        <  SRR4302533.5766101/94‑1 (MQ=60)

                                                                                        GCGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCG       <  SRR4302533.6306118/94‑1 (MQ=60)

                                                                                         CGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGC      <  SRR4302533.2216500/94‑1 (MQ=60)

                                                                                         CGGCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGC      >  SRR4302533.5294836/1‑94 (MQ=60)

                                                                                           GCAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCA    <  SRR4302533.3776100/94‑1 (MQ=60)

                                                                                            CAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCAT   >  SRR4302533.6329749/1‑94 (MQ=60)

                                                                                            CAACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCAT   >  SRR4302533.3817014/1‑94 (MQ=60)

                                                                                             AACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCATC  <  SRR4302533.3706763/94‑1 (MQ=60)

                                                                                             AACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCATC  <  SRR4302533.4331896/94‑1 (MQ=60)

                                                                                             AACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCATC  >  SRR4302533.4073823/1‑94 (MQ=60)

                                                                                             AACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCATC  <  SRR4302533.980271/94‑1 (MQ=60)

GGCGTTAATGCAGGCTTCAGCACCTTCCGCGTCGTTTTTACCTGTCACGTTCACGCCCATTGCAGCGGCACAGTCACGCAGACGTGCAGCGGCGACTTTGCTGTTGAATACCTGAACGTGCGGCAGCAAAACGGCGTTACATACACCGTGTGGCAGGTTGTAGAAACCGCCCAGCTGGTGCGCCATC  >  NC_000913/3754477‑3754663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`