Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,776,340 G→A G439S (GGT→AGT)  lldP → L‑lactate permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,776,3400GA100.0% 929.0 / NA 246G439S (GGT→AGT) lldPL‑lactate permease
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (140/106);  total (140/106)

Only 100 of 249 total aligned reads displayed.

ATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC  >  NC_000913/3776250‑3776429
                                                                                          |                                                                                         
aTCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGt                                                                                         >  1:551458/1‑93 (MQ=255)
 tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        >  2:3472859/1‑93 (MQ=255)
 tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        >  2:1907019/1‑93 (MQ=255)
 tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        >  2:2602125/1‑93 (MQ=255)
 tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        <  1:5886945/93‑1 (MQ=255)
 tCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTc                                                                                        <  1:5681199/93‑1 (MQ=255)
  cTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCa                                                                                       <  2:626621/93‑1 (MQ=255)
    aCTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATg                                                                                     >  1:1843717/1‑93 (MQ=255)
    aCTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATg                                                                                     >  1:1093950/1‑93 (MQ=255)
     cTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGc                                                                                    <  2:943458/93‑1 (MQ=255)
      tCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCa                                                                                   <  2:2381812/93‑1 (MQ=255)
         aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                >  1:3752073/1‑93 (MQ=255)
         aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                >  1:4615918/1‑93 (MQ=255)
         aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                <  2:3445634/93‑1 (MQ=255)
         aTCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTc                                                                                <  2:205762/93‑1 (MQ=255)
          tCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCa                                                                               >  1:5285766/1‑93 (MQ=255)
          tCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCa                                                                               >  2:4348266/1‑93 (MQ=255)
            ggTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCAcc                                                                             <  1:960352/93‑1 (MQ=255)
            ggTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCAcc                                                                             >  2:2428631/1‑93 (MQ=255)
               aTGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttc                                                                          >  1:1257544/1‑93 (MQ=255)
                tGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttct                                                                         <  1:3923807/93‑1 (MQ=255)
                 ggTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttctt                                                                        <  2:2342320/93‑1 (MQ=255)
                 ggTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACcttctt                                                                        <  1:1346147/93‑1 (MQ=255)
                  gTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCttcttc                                                                       <  1:6124024/93‑1 (MQ=255)
                   tGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTtcttct                                                                      <  2:4803404/93‑1 (MQ=255)
                   tGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTtcttct                                                                      >  2:1464654/1‑93 (MQ=255)
                   tGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTtcttct                                                                      <  1:3027290/93‑1 (MQ=255)
                    gCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTtctc                                                                     <  1:6144400/93‑1 (MQ=255)
                    gCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTtctc                                                                     <  1:4822543/93‑1 (MQ=255)
                       ggCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGcc                                                                  >  2:5180016/1‑93 (MQ=255)
                       ggCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGcc                                                                  <  1:4523614/93‑1 (MQ=255)
                          aTTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGtt                                                               <  1:722082/93‑1 (MQ=255)
                           ttCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGTGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTc                                                              >  2:3071055/1‑93 (MQ=255)
                           ttCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTc                                                              >  2:6034887/1‑93 (MQ=255)
                           ttCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTc                                                              >  1:2135532/1‑93 (MQ=255)
                           ttCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTc                                                              >  1:4482815/1‑93 (MQ=255)
                             cGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCt                                                            >  2:4992776/1‑93 (MQ=255)
                             cGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCt                                                            <  2:1575715/93‑1 (MQ=255)
                             cGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCt                                                            >  2:1948445/1‑93 (MQ=255)
                              gCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTc                                                           >  2:5322044/1‑93 (MQ=255)
                              gCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTc                                                           >  1:2599476/1‑93 (MQ=255)
                              gCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTc                                                           <  2:672595/93‑1 (MQ=255)
                              gCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTc                                                           <  1:3714885/93‑1 (MQ=255)
                                cTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCgg                                                         <  2:5909953/93‑1 (MQ=255)
                                cTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCgg                                                         <  2:2166807/93‑1 (MQ=255)
                                 tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggc                                                        <  2:509145/93‑1 (MQ=255)
                                 tttATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggc                                                        >  1:5991639/1‑93 (MQ=255)
                                    aTTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctgg                                                     >  1:2269636/1‑93 (MQ=255)
                                     tttCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGGACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCggctggc                                                    <  1:4089113/93‑1 (MQ=255)
                                        cGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGctggctgg                                                 <  1:2852618/93‑1 (MQ=255)
                                        cGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGctggctgg                                                 <  1:3566193/93‑1 (MQ=255)
                                         gAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTggg                                                >  2:365778/1‑93 (MQ=255)
                                          aaCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCTGCTGGCTgggg                                               <  2:400756/93‑1 (MQ=255)
                                          aaCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTgggg                                               >  1:641229/1‑93 (MQ=255)
                                          aaCTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTgggg                                               <  1:4032868/93‑1 (MQ=255)
                                            cTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTgggggg                                             >  2:320160/1‑92 (MQ=255)
                                             tATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTgggggga                                            >  2:5104880/1‑91 (MQ=255)
                                             tATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTa                                            >  2:1678772/1‑93 (MQ=255)
                                             tATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTa                                            >  1:3341578/1‑93 (MQ=255)
                                               ttCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTAtt                                          >  1:4414314/1‑93 (MQ=255)
                                                tCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTc                                         <  1:4150010/93‑1 (MQ=255)
                                                 ccGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTcc                                        >  2:1105977/1‑93 (MQ=255)
                                                 ccGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTcc                                        <  2:1236896/93‑1 (MQ=255)
                                                 ccGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGATTcc                                        >  2:570342/1‑93 (MQ=255)
                                                      cTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAcc                                   <  1:5446673/93‑1 (MQ=255)
                                                      cTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGAcc                                   <  1:2396025/93‑1 (MQ=255)
                                                       tGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCg                                  >  1:2553505/1‑93 (MQ=255)
                                                       tGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCg                                  <  2:3929084/93‑1 (MQ=255)
                                                        gTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCgg                                 <  1:5002489/93‑1 (MQ=255)
                                                         tcatcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCggg                                <  2:2835406/93‑1 (MQ=255)
                                                          catcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGt                               <  1:1135529/93‑1 (MQ=255)
                                                           atcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTc                              <  2:4440125/93‑1 (MQ=255)
                                                            tcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCg                             >  2:767739/1‑93 (MQ=255)
                                                            tcaACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCg                             >  1:4644133/1‑93 (MQ=255)
                                                              aaCACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGa                           <  1:5181505/93‑1 (MQ=255)
                                                               acacTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGAt                          >  2:1877652/1‑93 (MQ=255)
                                                               acacTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGCGTCGGaa                          >  1:27110/1‑92 (MQ=255)
                                                                  cTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAcc                       >  1:2971932/1‑93 (MQ=255)
                                                                   tGGCGCTGGCACTGGCGCACACCAGTCATGCGTTCACCTTCTTCTCGCCGTTCCTCGGCTGGGTGGGGGTAATCCTGACCCGGGCGGCTACCt                      >  2:6068099/1‑93 (MQ=255)
                                                                    ggCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTc                     <  1:3247563/93‑1 (MQ=255)
                                                                    ggCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTc                     <  1:1198091/93‑1 (MQ=255)
                                                                     gcgcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGATTCCTGACCGGGTCGGATACCTCa                    >  2:3390098/1‑93 (MQ=255)
                                                                       gcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATc                  <  1:2078519/93‑1 (MQ=255)
                                                                       gcTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATc                  <  2:4894477/93‑1 (MQ=255)
                                                                        cTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCt                 >  2:3998940/1‑93 (MQ=255)
                                                                            cACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACg             <  2:5345568/93‑1 (MQ=255)
                                                                             aCTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGc            >  2:5489487/1‑93 (MQ=255)
                                                                              cTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGcc           <  2:4156359/93‑1 (MQ=255)
                                                                               tGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGccc          >  1:3439971/1‑93 (MQ=255)
                                                                               tGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGccc          <  1:2229799/93‑1 (MQ=255)
                                                                                 gcgcACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTg        <  1:15041/93‑1 (MQ=255)
                                                                                 gcgcACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTg        >  2:3118632/1‑93 (MQ=255)
                                                                                   gcACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGtt      <  2:5242597/93‑1 (MQ=255)
                                                                                    cacaCCAGTCATGCATTGACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTc     <  2:5593175/93‑1 (MQ=255)
                                                                                    cacaCCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTc     <  1:2307135/93‑1 (MQ=255)
                                                                                    cacaCCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTc     <  1:3075831/93‑1 (MQ=255)
                                                                                     acacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcg    <  2:3872417/93‑1 (MQ=255)
                                                                                      cacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcgc   >  1:2897187/1‑93 (MQ=255)
                                                                                      cacCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcgc   <  2:2307818/93‑1 (MQ=255)
                                                                                       acCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTcgcc  >  2:3552642/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC  >  NC_000913/3776250‑3776429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCGC  >  NC_000913/3776247‑3776433
                                                                                             |                                                                                             
CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCA                                                                                               <  SRR4302533.2315996/94‑1 (MQ=60)
CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCA                                                                                               >  SRR4302533.4134124/1‑94 (MQ=60)
CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCA                                                                                               >  SRR4302533.1286044/1‑94 (MQ=60)
 CCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAG                                                                                              <  SRR4302533.3356305/94‑1 (MQ=60)
  CATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGT                                                                                             >  SRR4302533.4924140/1‑94 (MQ=60)
  CATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGT                                                                                             >  SRR4302533.554727/1‑94 (MQ=60)
    TCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCA                                                                                           <  SRR4302533.5922513/94‑1 (MQ=60)
    TCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCA                                                                                           <  SRR4302533.5715514/94‑1 (MQ=60)
      TACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATG                                                                                         >  SRR4302533.1100425/1‑94 (MQ=60)
      TACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATG                                                                                         >  SRR4302533.1854965/1‑94 (MQ=60)
       aggCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGC                                                                                        <  SRR4302533.131450/91‑1 (MQ=60)
         TCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCAT                                                                                      >  SRR4302533.2392361/1‑94 (MQ=60)
          CCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATT                                                                                     <  SRR4302533.4315782/94‑1 (MQ=60)
           CATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTC                                                                                    >  SRR4302533.4643871/1‑94 (MQ=60)
           CATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTC                                                                                    >  SRR4302533.3775076/1‑94 (MQ=60)
           CATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTC                                                                                    >  SRR4302533.2500195/1‑94 (MQ=60)
            ATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCA                                                                                   >  SRR4302533.5317429/1‑94 (MQ=60)
            ATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCA                                                                                   >  SRR4302533.1235777/1‑94 (MQ=60)
              CGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACC                                                                                 <  SRR4302533.3751011/94‑1 (MQ=60)
               GGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCT                                                                                >  SRR4302533.229233/1‑94 (MQ=60)
               GGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCT                                                                                <  SRR4302533.965997/94‑1 (MQ=60)
                ggagGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTT                                                                               <  SRR4302533.607224/90‑1 (MQ=60)
                 TATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTC                                                                              >  SRR4302533.1265063/1‑94 (MQ=60)
                 TATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTC                                                                              >  SRR4302533.871991/1‑94 (MQ=60)
                   TGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTT                                                                            <  SRR4302533.3947763/94‑1 (MQ=60)
                   TGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTT                                                                            <  SRR4302533.2499485/94‑1 (MQ=60)
                   TGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGCACTGTCATCATCACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTT                                                                            <  SRR4302533.2003341/94‑1 (MQ=60)
                    GGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTC                                                                           <  SRR4302533.1111026/94‑1 (MQ=60)
                    GGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTC                                                                           <  SRR4302533.1354247/94‑1 (MQ=60)
                     GTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCT                                                                          <  SRR4302533.6160940/94‑1 (MQ=60)
                     GTGCTGGCATTCGCCTTTATTTCGAACTATGCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCT                                                                          <  SRR4302533.5898293/94‑1 (MQ=60)
                      TGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTC                                                                         <  SRR4302533.3045816/94‑1 (MQ=60)
                      TGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTC                                                                         <  SRR4302533.2268766/94‑1 (MQ=60)
                       GCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCG                                                                        <  SRR4302533.6181397/94‑1 (MQ=60)
                       GCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCG                                                                        <  SRR4302533.4851763/94‑1 (MQ=60)
                        CTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGC                                                                       >  SRR4302533.3232792/1‑94 (MQ=60)
                          GGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCG                                                                     <  SRR4302533.4550996/94‑1 (MQ=60)
                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                  >  SRR4302533.2148698/1‑94 (MQ=60)
                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                  >  SRR4302533.2781163/1‑94 (MQ=60)
                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                  <  SRR4302533.726344/94‑1 (MQ=60)
                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                  >  SRR4302533.1951375/1‑94 (MQ=60)
                             ATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTC                                                                  >  SRR4302533.4509962/1‑94 (MQ=60)
                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                               <  SRR4302533.2144901/94‑1 (MQ=60)
                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                               >  SRR4302533.5310961/1‑94 (MQ=60)
                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                               >  SRR4302533.2615451/1‑94 (MQ=60)
                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                               >  SRR4302533.4730903/1‑94 (MQ=60)
                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                               <  SRR4302533.3269421/94‑1 (MQ=60)
                                CGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTC                                                               >  SRR4302533.3232101/1‑94 (MQ=60)
                                 GCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCG                                                              <  SRR4302533.3737691/94‑1 (MQ=60)
                                 GCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCG                                                              >  SRR4302533.2318258/1‑94 (MQ=60)
                                  CCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGG                                                             >  SRR4302533.46029/1‑94 (MQ=60)
                                   CTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGC                                                            >  SRR4302533.6027932/1‑94 (MQ=60)
                                    TTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCT                                                           >  SRR4302533.2192792/1‑94 (MQ=60)
                                     TTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTG                                                          <  SRR4302533.6247950/94‑1 (MQ=60)
                                      TATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGG                                                         >  SRR4302533.2283677/1‑94 (MQ=60)
                                      TATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGG                                                         <  SRR4302533.4477799/94‑1 (MQ=60)
                                       ATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGC                                                        >  SRR4302533.2679643/1‑94 (MQ=60)
                                        TTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGGACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCT                                                       <  SRR4302533.4114008/94‑1 (MQ=60)
                                          TCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGG                                                     <  SRR4302533.3069506/94‑1 (MQ=60)
                                           CGAACTATTCCGGACTGTCATCAACACTGGCTCTGGCACTGGCGCACACCACTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGG                                                    <  SRR4302533.2870165/94‑1 (MQ=60)
                                           CGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGG                                                    <  SRR4302533.3588171/94‑1 (MQ=60)
                                           CGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGG                                                    <  SRR4302533.2870164/94‑1 (MQ=60)
                                            GAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGG                                                   <  SRR4302533.65591/94‑1 (MQ=60)
                                            GAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGG                                                   <  SRR4302533.4686/94‑1 (MQ=60)
                                            GAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGG                                                   >  SRR4302533.644998/1‑94 (MQ=60)
                                            GAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTGCTCGCCGTTCCTCGGCTGGCTGGGG                                                   <  SRR4302533.3637893/94‑1 (MQ=60)
                                             AACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGG                                                  >  SRR4302533.6172521/1‑94 (MQ=60)
                                             AACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGG                                                  <  SRR4302533.4057418/94‑1 (MQ=60)
                                             AACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGG                                                  >  SRR4302533.1400996/1‑94 (MQ=60)
                                              ACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGT                                                 >  SRR4302533.1215326/1‑94 (MQ=60)
                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTA                                                >  SRR4302533.3362233/1‑94 (MQ=60)
                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTA                                                >  SRR4302533.2874248/1‑94 (MQ=60)
                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTA                                                >  SRR4302533.1364527/1‑94 (MQ=60)
                                               CTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTA                                                <  SRR4302533.413863/94‑1 (MQ=60)
                                                 ATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATT                                              >  SRR4302533.4440968/1‑94 (MQ=60)
                                                 ATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATT                                              >  SRR4302533.2989757/1‑94 (MQ=60)
                                                  TTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTC                                             >  SRR4302533.5278490/1‑94 (MQ=60)
                                                   TCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCC                                            <  SRR4302533.4175151/94‑1 (MQ=60)
                                                    CCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCT                                           >  SRR4302533.6205575/1‑94 (MQ=60)
                                                     CGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTG                                          >  SRR4302533.6152119/1‑94 (MQ=60)
                                                      GGACTGTCATCAACACTGGCGCTCGCACTGGAGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGA                                         >  SRR4302533.5417359/1‑94 (MQ=60)
                                                        ACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGATTCCTGACC                                       >  SRR4302533.4946819/1‑94 (MQ=60)
                                                         CTGTCATCAACACTGGCGCTGGCACTGGCGCACCCCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCG                                      <  SRR4302533.5636819/94‑1 (MQ=60)
                                                         CTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCG                                      >  SRR4302533.2569217/1‑94 (MQ=60)
                                                         CTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCG                                      <  SRR4302533.2410815/94‑1 (MQ=60)
                                                         CTGTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCG                                      <  SRR4302533.5479484/94‑1 (MQ=60)
                                                           GTCATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGG                                    <  SRR4302533.5032811/94‑1 (MQ=60)
                                                             CATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTC                                  <  SRR4302533.1142282/94‑1 (MQ=60)
                                                              ATCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCG                                 >  SRR4302533.4672268/1‑94 (MQ=60)
                                                               TCAACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGG                                >  SRR4302533.4324729/1‑94 (MQ=60)
                                                                 AACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGAT                              >  SRR4302533.3619139/1‑94 (MQ=60)
                                                                 AACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGAT                              <  SRR4302533.5212793/94‑1 (MQ=60)
                                                                 AACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGCGTCGGAA                              >  SRR4302533.27290/1‑94 (MQ=60)
                                                                  ACACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATA                             >  SRR4302533.600399/1‑94 (MQ=60)
                                                                    ACTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACC                           >  SRR4302533.2990116/1‑94 (MQ=60)
                                                                     CTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCT                          >  SRR4302533.5492444/1‑94 (MQ=60)
                                                                     CTGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCT                          <  SRR4302533.3802835/94‑1 (MQ=60)
                                                                      TGGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTC                         >  SRR4302533.40666/1‑94 (MQ=60)
                                                                       GGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCA                        >  SRR4302533.4539201/1‑94 (MQ=60)
                                                                       GGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCA                        <  SRR4302533.1205289/94‑1 (MQ=60)
                                                                       GGCGCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCA                        <  SRR4302533.3267592/94‑1 (MQ=60)
                                                                          GCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCT                     >  SRR4302533.844738/1‑94 (MQ=60)
                                                                          GCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCT                     <  SRR4302533.2091311/94‑1 (MQ=60)
                                                                          GCTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATAACTCATCT                     >  SRR4302533.4525134/1‑94 (MQ=60)
                                                                           CTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTA                    >  SRR4302533.3985043/1‑94 (MQ=60)
                                                                           CTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTA                    >  SRR4302533.4654220/1‑94 (MQ=60)
                                                                           CTGGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGGATTCCTGACCGGGTCGGATACCTCATCTA                    >  SRR4302533.2724082/1‑94 (MQ=60)
                                                                             GGCACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAAC                  <  SRR4302533.4059745/94‑1 (MQ=60)
                                                                               CACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGC                >  SRR4302533.159662/1‑94 (MQ=60)
                                                                                ACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCC               >  SRR4302533.301480/1‑94 (MQ=60)
                                                                                ACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCC               >  SRR4302533.3442170/1‑94 (MQ=60)
                                                                                ACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCC               <  SRR4302533.117318/94‑1 (MQ=60)
                                                                                ACTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCC               <  SRR4302533.2235109/94‑1 (MQ=60)
                                                                                 CTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCC              >  SRR4302533.3461216/1‑94 (MQ=60)
                                                                                 CTGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCC              >  SRR4302533.3522084/1‑94 (MQ=60)
                                                                                  TGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCT             >  SRR4302533.5096831/1‑94 (MQ=60)
                                                                                  TGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCT             <  SRR4302533.2243561/94‑1 (MQ=60)
                                                                                  TGGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCT             <  SRR4302533.2587848/94‑1 (MQ=60)
                                                                                   GGCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTG            >  SRR4302533.3029122/1‑94 (MQ=60)
                                                                                    GCGCACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGT           <  SRR4302533.15147/94‑1 (MQ=60)
                                                                                       CACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCGCTGTTCC        >  SRR4302533.3407921/1‑94 (MQ=60)
                                                                                       CACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCG        <  SRR4302533.2321428/94‑1 (MQ=60)
                                                                                       CACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCG        <  SRR4302533.5523584/94‑1 (MQ=60)
                                                                                       CACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCG        <  SRR4302533.3094708/94‑1 (MQ=60)
                                                                                        ACACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGC       >  SRR4302533.2914998/1‑94 (MQ=60)
                                                                                         CACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC      >  SRR4302533.3851314/1‑94 (MQ=60)
                                                                                         CACCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCC      >  SRR4302533.5845831/1‑94 (MQ=60)
                                                                                           CCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGC    <  SRR4302533.5103729/94‑1 (MQ=60)
                                                                                           CCAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTAGTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGC    >  SRR4302533.3635922/1‑94 (MQ=60)
                                                                                            CAGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCG   <  SRR4302533.267042/94‑1 (MQ=60)
                                                                                            CAGTCATGCATTCACCTTCTTCTCGCCGATCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCG   <  SRR4302533.6094721/94‑1 (MQ=60)
                                                                                             AGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCGC  >  SRR4302533.92082/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCCATCTACTCCATCGGTATGGTGCTGGCATTCGCCTTTATTTCGAACTATTCCGGACTGTCATCAACACTGGCGCTGGCACTGGCGCACACCGGTCATGCATTCACCTTCTTCTCGCCGTTCCTCGGCTGGCTGGGGGTATTCCTGACCGGGTCGGATACCTCATCTAACGCCCTGTTCGCCGCGC  >  NC_000913/3776247‑3776433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑