Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,793,037	A→G	Q161R (CAG→CGG)	rfaF →	ADP‑heptose‑‑lps heptosyltransferase II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,793,037	0	A	G	100.0%	884.0 / NA	272	Q161R (CAG→CGG)	rfaF	ADP‑heptose‑‑lps heptosyltransferase II
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (135/137); total (135/137)

Only 100 of 283 total aligned reads displayed.

TGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCAGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGT  >  NC_000913/3792947‑3793126

tggtggAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCggg                                                                                         >  2:398415/1‑93 (MQ=255)

   tggAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGa                                                                                      <  2:5464280/93‑1 (MQ=255)

    ggAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAg                                                                                     <  1:4098332/93‑1 (MQ=255)

    ggAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAg                                                                                     <  1:469104/93‑1 (MQ=255)

    ggAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAg                                                                                     >  1:1517603/1‑93 (MQ=255)

    ggAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAg                                                                                     <  1:3053967/93‑1 (MQ=255)

    ggAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAg                                                                                     <  1:2262039/93‑1 (MQ=255)

     gAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGc                                                                                    <  2:1241077/93‑1 (MQ=255)

     gAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGc                                                                                    >  2:1277829/1‑93 (MQ=255)

       aCGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGa                                                                                  <  1:604788/93‑1 (MQ=255)

         gCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAg                                                                                >  1:2164035/1‑93 (MQ=255)

          cTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAgg                                                                               <  2:3360520/93‑1 (MQ=255)

          cTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAgg                                                                               <  1:826356/93‑1 (MQ=255)

          cTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAgg                                                                               >  2:919441/1‑93 (MQ=255)

           tatataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGt                                                                              <  2:1428049/93‑1 (MQ=255)

           tatataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGt                                                                              <  2:3488345/93‑1 (MQ=255)

           tatataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGt                                                                              >  2:3662867/1‑93 (MQ=255)

           tatataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGt                                                                              >  1:1634681/1‑93 (MQ=255)

           tatataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGt                                                                              >  2:4197211/1‑93 (MQ=255)

            atataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTg                                                                             <  2:3246291/93‑1 (MQ=255)

            atataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTg                                                                             <  1:1314254/93‑1 (MQ=255)

             tataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGa                                                                            >  1:122003/1‑93 (MQ=255)

             tataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGa                                                                            >  1:5777173/1‑93 (MQ=255)

             tataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGa                                                                            <  1:5260609/93‑1 (MQ=255)

              ataGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGaa                                                                           <  1:5582428/93‑1 (MQ=255)

               taGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGaaa                                                                          <  2:3870329/93‑1 (MQ=255)

               taGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGaaa                                                                          >  1:6174944/1‑93 (MQ=255)

                 gcgcTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGaaaaa                                                                        >  2:5280918/1‑93 (MQ=255)

                 gcgcTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGaaaaa                                                                        >  2:152834/1‑93 (MQ=255)

                   gcTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATc                                                                      >  2:4306788/1‑93 (MQ=255)

                    cTGGCCTATGACAAAGGCATTATGCGCACAGCATAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCa                                                                     <  1:3981165/93‑1 (MQ=255)

                    cTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCa                                                                     >  1:3273902/1‑93 (MQ=255)

                      ggCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCata                                                                   <  2:2062375/93‑1 (MQ=255)

                      ggCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCata                                                                   <  2:1114941/93‑1 (MQ=255)

                      ggCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCaaa                                                                   >  1:3466002/1‑91 (MQ=255)

                       gCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCatat                                                                  <  1:3642044/93‑1 (MQ=255)

                       gCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCatat                                                                  <  2:5564605/93‑1 (MQ=255)

                       gCCTATGACAAAGACATTATGCGCACAGCACAAGATCTGCCTCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCatat                                                                  <  1:2811535/93‑1 (MQ=255)

                         cTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATAc                                                                >  1:5102554/1‑93 (MQ=255)

                           aTGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCt                                                              <  1:1077567/93‑1 (MQ=255)

                           aTGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCt                                                              <  2:440014/93‑1 (MQ=255)

                           aTGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCt                                                              >  2:4647675/1‑93 (MQ=255)

                           aTGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCt                                                              >  1:1486513/1‑93 (MQ=255)

                            tGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTg                                                             <  1:2961885/93‑1 (MQ=255)

                             gACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCAGTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGt                                                            >  1:4440059/1‑93 (MQ=255)

                              aCAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTa                                                           >  2:891199/1‑93 (MQ=255)

                               cAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTaa                                                          <  2:768004/93‑1 (MQ=255)

                                aaaGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAAt                                                         >  1:6485/1‑93 (MQ=255)

                                 aaGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATc                                                        >  1:2450353/1‑93 (MQ=255)

                                  aGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCa                                                       >  1:4372702/1‑93 (MQ=255)

                                   ggCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCaa                                                      >  2:1475535/1‑93 (MQ=255)

                                    gCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCTCAGTGGCGGGTGAGCGAAGGTGAAAAGTCATATACCTGTAATCAAt                                                     <  2:3043738/93‑1 (MQ=255)

                                     cATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAAtt                                                    <  1:427429/93‑1 (MQ=255)

                                        tATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTc                                                 >  2:3713897/1‑93 (MQ=255)

                                        tATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTc                                                 >  2:2447836/1‑93 (MQ=255)

                                        tATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTc                                                 >  2:170361/1‑93 (MQ=255)

                                         aTGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCg                                                <  1:5031223/93‑1 (MQ=255)

                                            cgcACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCtt                                             <  1:5178062/93‑1 (MQ=255)

                                            cgcACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCtt                                             <  2:2819686/93‑1 (MQ=255)

                                             gcacagcacaAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCttt                                            <  1:5518684/93‑1 (MQ=255)

                                             gcacagcacaAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCttt                                            <  1:4181236/93‑1 (MQ=255)

                                              cacagcacaAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTtc                                           <  2:5030474/93‑1 (MQ=255)

                                                    acaAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGa                                     >  1:3374718/1‑93 (MQ=255)

                                                    acaAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGa                                     <  1:2295401/93‑1 (MQ=255)

                                                      aaGATCTGCCGCAGCCATTATTATGGCCTCAGTTGCAGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAAc                                   <  2:2978765/93‑1 (MQ=255)

                                                       aGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACg                                  >  2:3754310/1‑93 (MQ=255)

                                                        gATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGt                                 <  2:471061/93‑1 (MQ=255)

                                                         aTCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTc                                <  2:2217922/93‑1 (MQ=255)

                                                          tCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAGTTTTCGCTTTCATCAGAACGTcc                               >  2:1851560/1‑93 (MQ=255)

                                                          tCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTcc                               >  1:211676/1‑93 (MQ=255)

                                                          tCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTcc                               <  1:3789541/93‑1 (MQ=255)

                                                           cTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCg                              >  1:2587240/1‑93 (MQ=255)

                                                            tGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGCACGTCCga                             >  1:5876509/1‑93 (MQ=255)

                                                             gCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCgat                            >  2:1915383/1‑93 (MQ=255)

                                                             gCCGCAGCCATTGTTATGGACGCAGTTGCGGGGGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCgat                            >  2:5913763/1‑93 (MQ=255)

                                                               cGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCgatga                          <  2:1043295/93‑1 (MQ=255)

                                                               cGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCgatga                          <  1:321896/93‑1 (MQ=255)

                                                               cGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCgatga                          >  1:1740063/1‑93 (MQ=255)

                                                                gCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGAGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCgatgat                         >  1:4077689/1‑93 (MQ=255)

                                                                   gCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTgg                      >  1:2034206/1‑93 (MQ=255)

                                                                   gCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTgg                      >  2:2287472/1‑93 (MQ=255)

                                                                      aTTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGttt                   >  1:2702691/1‑93 (MQ=255)

                                                                       ttGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGtttt                  <  1:3529842/93‑1 (MQ=255)

                                                                       ttGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGtttt                  <  2:1603214/93‑1 (MQ=255)

                                                                       ttGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGtttt                  <  2:6084741/93‑1 (MQ=255)

                                                                       ttGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGtttt                  >  2:3733182/1‑93 (MQ=255)

                                                                           tataGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGcc              >  2:6282641/1‑93 (MQ=255)

                                                                           tATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGcc              <  2:4096917/93‑1 (MQ=255)

                                                                            aTGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGccc             <  1:1590341/93‑1 (MQ=255)

                                                                            aTGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGccc             <  2:4879504/93‑1 (MQ=255)

                                                                            aTGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGccc             <  1:5013437/93‑1 (MQ=255)

                                                                             tGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCg            >  2:1680526/1‑93 (MQ=255)

                                                                               gCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCggg          <  1:919202/93‑1 (MQ=255)

                                                                                 cGCAGTGGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTg        >  2:5056412/1‑93 (MQ=255)

                                                                                  gCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGc       >  2:3141121/1‑93 (MQ=255)

                                                                                     gTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGa    >  2:5770531/1‑93 (MQ=255)

                                                                                     gTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGa    >  1:3151029/1‑93 (MQ=255)

                                                                                     gTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGa    >  2:840789/1‑93 (MQ=255)

                                                                                      ttGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAg   <  2:2379339/93‑1 (MQ=255)

                                                                                       tGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGt  <  1:5587285/93‑1 (MQ=255)

TGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCAGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGT  >  NC_000913/3792947‑3793126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCAGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGTTTGG  >  NC_000913/3792944‑3793130

TAATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCG                                                                                               >  SRR4302533.5762300/1‑94 (MQ=60)

TAATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCG                                                                                               <  SRR4302533.736562/94‑1 (MQ=60)

 AATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGG                                                                                              >  SRR4302533.1272209/1‑94 (MQ=60)

 AATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGG                                                                                              <  SRR4302533.5204410/94‑1 (MQ=60)

 AATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGG                                                                                              >  SRR4302533.4909066/1‑94 (MQ=60)

  ATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGG                                                                                             <  SRR4302533.2297131/94‑1 (MQ=60)

  ATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGG                                                                                             <  SRR4302533.1753104/94‑1 (MQ=60)

  ATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGG                                                                                             <  SRR4302533.3739788/94‑1 (MQ=60)

    GGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTG                                                                                           >  SRR4302533.3245/1‑94 (MQ=60)

    GGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTG                                                                                           >  SRR4302533.213558/1‑94 (MQ=60)

     GTGGAACGCTATATAGCGCTGGCCTATTACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGA                                                                                          <  SRR4302533.2569019/94‑1 (MQ=60)

      TGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCTGCAGTTGCGGGTGAG                                                                                         >  SRR4302533.912758/1‑94 (MQ=60)

      TGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAG                                                                                         >  SRR4302533.1526738/1‑94 (MQ=60)

      TGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAG                                                                                         <  SRR4302533.5226909/94‑1 (MQ=60)

      TGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAG                                                                                         <  SRR4302533.1703887/94‑1 (MQ=60)

      TGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAG                                                                                         >  SRR4302533.3226030/1‑94 (MQ=60)

       GGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGC                                                                                        <  SRR4302533.4123278/94‑1 (MQ=60)

       GGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGC                                                                                        <  SRR4302533.471906/94‑1 (MQ=60)

       GGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGC                                                                                        <  SRR4302533.3072677/94‑1 (MQ=60)

       GGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGC                                                                                        <  SRR4302533.2276028/94‑1 (MQ=60)

          ACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAA                                                                                     <  SRR4302533.608339/94‑1 (MQ=60)

           CGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAG                                                                                    <  SRR4302533.5845987/94‑1 (MQ=60)

           CGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAG                                                                                    >  SRR4302533.2177350/1‑94 (MQ=60)

           CGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAG                                                                                    <  SRR4302533.5406985/94‑1 (MQ=60)

           CGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAG                                                                                    <  SRR4302533.5574247/94‑1 (MQ=60)

           CGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAG                                                                                    <  SRR4302533.3330840/94‑1 (MQ=60)

             CTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGT                                                                                  >  SRR4302533.1644583/1‑94 (MQ=60)

             CTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGT                                                                                  <  SRR4302533.831201/94‑1 (MQ=60)

              TATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTG                                                                                 >  SRR4302533.3164664/1‑94 (MQ=60)

              TATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTG                                                                                 >  SRR4302533.1189083/1‑94 (MQ=60)

               ATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGA                                                                                >  SRR4302533.122772/1‑94 (MQ=60)

               ATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGA                                                                                <  SRR4302533.1322139/94‑1 (MQ=60)

               ATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGA                                                                                >  SRR4302533.5812067/1‑94 (MQ=60)

               ATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGA                                                                                >  SRR4302533.51694/1‑94 (MQ=60)

                TATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGGA                                                                               >  SRR4302533.4379709/1‑94 (MQ=60)

                TATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAA                                                                               <  SRR4302533.5292190/94‑1 (MQ=60)

                TATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAA                                                                               >  SRR4302533.4167750/1‑94 (MQ=60)

                 ATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAA                                                                              <  SRR4302533.5616157/94‑1 (MQ=60)

                 ATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAA                                                                              >  SRR4302533.6212049/1‑94 (MQ=60)

                    GCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAAT                                                                           <  SRR4302533.3563875/94‑1 (MQ=60)

                      GCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCA                                                                         >  SRR4302533.3294111/1‑94 (MQ=60)

                       CTGGCCTATGACAAAGGCATTATGCGCACAGCATAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCAT                                                                        <  SRR4302533.4005404/94‑1 (MQ=60)

                       CTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCAT                                                                        >  SRR4302533.3105715/1‑94 (MQ=60)

                       CTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCAT                                                                        <  SRR4302533.6221648/94‑1 (MQ=60)

                        TGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATA                                                                       <  SRR4302533.5302283/94‑1 (MQ=60)

                        TGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATA                                                                       >  SRR4302533.4807392/1‑94 (MQ=60)

                        TGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATA                                                                       >  SRR4302533.1694841/1‑94 (MQ=60)

                        TGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCAAA                                                                       >  SRR4302533.3487395/1‑94 (MQ=60)

                         GGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATAT                                                                      >  SRR4302533.1513761/1‑94 (MQ=60)

                          GCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATA                                                                     >  SRR4302533.6183313/1‑94 (MQ=60)

                          GCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATA                                                                     <  SRR4302533.3664439/94‑1 (MQ=60)

                          GCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATA                                                                     <  SRR4302533.2125754/94‑1 (MQ=60)

                          GCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATA                                                                     >  SRR4302533.880664/1‑94 (MQ=60)

                          GCCTATGACAAAGACATTATGCGCACAGCACAAGATCTGCCTCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATA                                                                     <  SRR4302533.2828839/94‑1 (MQ=60)

                           CCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATAC                                                                    >  SRR4302533.5133379/1‑94 (MQ=60)

                            CTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACC                                                                   <  SRR4302533.5182770/94‑1 (MQ=60)

                            CTATGACAAAGGCATTATGCGCACAGCACAACATCTGCCGCAGGCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACC                                                                   >  SRR4302533.3454376/1‑94 (MQ=60)

                             TATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCT                                                                  <  SRR4302533.4290269/94‑1 (MQ=60)

                             TATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCT                                                                  >  SRR4302533.2226218/1‑94 (MQ=60)

                             TATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCT                                                                  >  SRR4302533.2253953/1‑94 (MQ=60)

                             TATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCT                                                                  >  SRR4302533.1495480/1‑94 (MQ=60)

                             TATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCT                                                                  >  SRR4302533.5922262/1‑94 (MQ=60)

                              ATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTG                                                                 <  SRR4302533.1083920/94‑1 (MQ=60)

                              ATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTG                                                                 <  SRR4302533.3611580/94‑1 (MQ=60)

                               TGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGT                                                                <  SRR4302533.2979991/94‑1 (MQ=60)

                               TGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCAGTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGT                                                                >  SRR4302533.4466901/1‑94 (MQ=60)

                                  CAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAAT                                                             >  SRR4302533.6544/1‑94 (MQ=60)

                                   AAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATC                                                            >  SRR4302533.2465476/1‑94 (MQ=60)

                                    AAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCA                                                           >  SRR4302533.4399096/1‑94 (MQ=60)

                                     AGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAA                                                          >  SRR4302533.1842115/1‑94 (MQ=60)

                                       GCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATT                                                        >  SRR4302533.2305391/1‑94 (MQ=60)

                                        CATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTT                                                       <  SRR4302533.1537291/94‑1 (MQ=60)

                                        CATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTT                                                       <  SRR4302533.429978/94‑1 (MQ=60)

                                         ATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTT                                                      >  SRR4302533.3853069/1‑94 (MQ=60)

                                           TATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCG                                                    <  SRR4302533.590349/94‑1 (MQ=60)

                                            ATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGC                                                   <  SRR4302533.5061687/94‑1 (MQ=60)

                                             TGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCT                                                  <  SRR4302533.2970778/94‑1 (MQ=60)

                                              GCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTT                                                 <  SRR4302533.262546/94‑1 (MQ=60)

                                              GCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTT                                                 >  SRR4302533.215738/1‑94 (MQ=60)

                                               CGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTT                                                <  SRR4302533.5209334/94‑1 (MQ=60)

                                               CGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTT                                                <  SRR4302533.2520351/94‑1 (MQ=60)

                                                GCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTC                                               <  SRR4302533.5552007/94‑1 (MQ=60)

                                                GCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTC                                               <  SRR4302533.4206559/94‑1 (MQ=60)

                                                 CACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCA                                              >  SRR4302533.4396020/1‑94 (MQ=60)

                                                   CAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATC                                            <  SRR4302533.5766732/94‑1 (MQ=60)

                                                   CAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATC                                            >  SRR4302533.4254055/1‑94 (MQ=60)

                                                   CAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATC                                            >  SRR4302533.2030420/1‑94 (MQ=60)

                                                    AGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCA                                           <  SRR4302533.5023725/94‑1 (MQ=60)

                                                    AGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCA                                           <  SRR4302533.3172319/94‑1 (MQ=60)

                                                     GCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAG                                          >  SRR4302533.2085575/1‑94 (MQ=60)

                                                     GCACAAGATCTGCCGCAGCCATTGGTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGAAATCAATTTTCGCTTTCATCAG                                          <  SRR4302533.4108930/94‑1 (MQ=60)

                                                      CACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGA                                         >  SRR4302533.4715235/1‑94 (MQ=60)

                                                      CACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGA                                         >  SRR4302533.3395555/1‑94 (MQ=60)

                                                       ACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAA                                        >  SRR4302533.1306337/1‑94 (MQ=60)

                                                       ACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAA                                        <  SRR4302533.2309616/94‑1 (MQ=60)

                                                        CAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAAC                                       >  SRR4302533.3241232/1‑94 (MQ=60)

                                                         AAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAGATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACG                                      <  SRR4302533.2617775/94‑1 (MQ=60)

                                                         AAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACG                                      <  SRR4302533.5046760/94‑1 (MQ=60)

                                                          AGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGT                                     <  SRR4302533.1326634/94‑1 (MQ=60)

                                                          AGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGT                                     >  SRR4302533.6262467/1‑94 (MQ=60)

                                                          AGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGT                                     >  SRR4302533.6186848/1‑94 (MQ=60)

                                                            ATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCC                                   >  SRR4302533.213010/1‑94 (MQ=60)

                                                            ATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCC                                   >  SRR4302533.4025966/1‑94 (MQ=60)

                                                            ATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCC                                   <  SRR4302533.5745571/94‑1 (MQ=60)

                                                            ATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCC                                   <  SRR4302533.1322161/94‑1 (MQ=60)

                                                             TCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCG                                  >  SRR4302533.2603146/1‑94 (MQ=60)

                                                             TCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCG                                  <  SRR4302533.3812744/94‑1 (MQ=60)

                                                             TCTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCG                                  <  SRR4302533.1315703/94‑1 (MQ=60)

                                                              CTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGCACGTCCGA                                 >  SRR4302533.5912034/1‑94 (MQ=60)

                                                              CTGCCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGA                                 >  SRR4302533.1569321/1‑94 (MQ=60)

                                                                 CCGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGA                              >  SRR4302533.1750614/1‑94 (MQ=60)

                                                                  CGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGAT                             <  SRR4302533.323864/94‑1 (MQ=60)

                                                                  CGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGAT                             <  SRR4302533.1626394/94‑1 (MQ=60)

                                                                  CGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGAT                             >  SRR4302533.5130731/1‑94 (MQ=60)

                                                                  CGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGAT                             >  SRR4302533.4630302/1‑94 (MQ=60)

                                                                  CGCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGAGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGAT                             >  SRR4302533.4102513/1‑94 (MQ=60)

                                                                   GCAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATT                            >  SRR4302533.513236/1‑94 (MQ=60)

                                                                    CAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTG                           <  SRR4302533.2419357/94‑1 (MQ=60)

                                                                    CAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTG                           <  SRR4302533.3064900/94‑1 (MQ=60)

                                                                    CAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTG                           >  SRR4302533.3691533/1‑94 (MQ=60)

                                                                    CAGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTG                           <  SRR4302533.5618987/94‑1 (MQ=60)

                                                                     AGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGG                          >  SRR4302533.407859/1‑94 (MQ=60)

                                                                     AGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGG                          >  SRR4302533.3360450/1‑94 (MQ=60)

                                                                     AGCCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGG                          >  SRR4302533.2046755/1‑94 (MQ=60)

                                                                       CCATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTT                        <  SRR4302533.2815890/94‑1 (MQ=60)

                                                                        CATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTT                       >  SRR4302533.2719268/1‑94 (MQ=60)

                                                                         ATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACatacagcagatcggaag                      >  SRR4302533.1500909/1‑77 (MQ=60)

                                                                         ATTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTT                      >  SRR4302533.557007/1‑94 (MQ=60)

                                                                          TTGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTT                     <  SRR4302533.3551597/94‑1 (MQ=60)

                                                                           TGTTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTG                    <  SRR4302533.34454/94‑1 (MQ=60)

                                                                             TTATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCC                  <  SRR4302533.4115047/94‑1 (MQ=60)

                                                                              TATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCC                 <  SRR4302533.3919576/94‑1 (MQ=60)

                                                                              TATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCC                 >  SRR4302533.353068/1‑94 (MQ=60)

                                                                              TATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCC                 >  SRR4302533.5283359/1‑94 (MQ=60)

                                                                               ATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCG                <  SRR4302533.5043813/94‑1 (MQ=60)

                                                                               ATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCG                <  SRR4302533.1599960/94‑1 (MQ=60)

                                                                               ATGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCG                <  SRR4302533.6065997/94‑1 (MQ=60)

                                                                                TGGCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCACTTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGG               <  SRR4302533.4460962/94‑1 (MQ=60)

                                                                                  GCCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGT             <  SRR4302533.924602/94‑1 (MQ=60)

                                                                                   CCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTG            >  SRR4302533.4441688/1‑94 (MQ=60)

                                                                                   CCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTG            >  SRR4302533.735789/1‑94 (MQ=60)

                                                                                   CCGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTCCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTG            <  SRR4302533.2927679/94‑1 (MQ=60)

                                                                                    CGCAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGC           <  SRR4302533.2410334/94‑1 (MQ=60)

                                                                                      CAGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGG         <  SRR4302533.2758433/94‑1 (MQ=60)

                                                                                       AGTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGA        >  SRR4302533.3170403/1‑94 (MQ=60)

                                                                                        GTTGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAG       >  SRR4302533.3673064/1‑94 (MQ=60)

                                                                                          TGCGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGTT     <  SRR4302533.5621041/94‑1 (MQ=60)

                                                                                            CGGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGTTTG   <  SRR4302533.1926172/94‑1 (MQ=60)

                                                                                             GGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGTTTGG  <  SRR4302533.2252709/94‑1 (MQ=60)

TAATGGTGGAACGCTATATAGCGCTGGCCTATGACAAAGGCATTATGCGCACAGCACAAGATCTGCCGCAGCCATTGTTATGGCCGCAGTTGCAGGTGAGCGAAGGTGAAAAATCATATACCTGTAATCAATTTTCGCTTTCATCAGAACGTCCGATGATTGGTTTTTGCCCGGGTGCGGAGTTTGG  >  NC_000913/3792944‑3793130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`