Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,829,919	T→C	D749G (GAC→GGC)	yicI ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,829,919	0	T	C	99.7%	997.9 / NA	308	D749G (GAC→GGC)	yicI	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (152/155); minor base A (1/0); total (153/155)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 310 total aligned reads displayed.

GGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCA  >  NC_000913/3829829‑3830008

ggCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCt                                                                                         <  2:2513945/93‑1 (MQ=255)

ggCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCt                                                                                         <  2:183326/93‑1 (MQ=255)

 gCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCtt                                                                                        <  1:2250169/93‑1 (MQ=255)

  cATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTg                                                                                       >  1:6265402/1‑93 (MQ=255)

   aTTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGc                                                                                      <  1:3588321/93‑1 (MQ=255)

   aTTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGc                                                                                      <  1:2878096/93‑1 (MQ=255)

   aTTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGc                                                                                      <  2:25830/93‑1 (MQ=255)

   aTTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGc                                                                                      >  2:4983828/1‑93 (MQ=255)

   aTTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGc                                                                                      <  2:5017146/93‑1 (MQ=255)

   aTTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGc                                                                                      >  1:513812/1‑93 (MQ=255)

    ttCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCa                                                                                     <  1:6078471/93‑1 (MQ=255)

     tCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAg                                                                                    >  1:497258/1‑93 (MQ=255)

       cATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGAc                                                                                  <  2:4224537/93‑1 (MQ=255)

        aTCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGAcc                                                                                 <  1:2606942/93‑1 (MQ=255)

         tCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCa                                                                                >  2:5410358/1‑93 (MQ=255)

         tCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCa                                                                                >  2:6114959/1‑93 (MQ=255)

          cAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCAt                                                                               <  1:1024193/93‑1 (MQ=255)

           aaTAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCAtt                                                                              >  1:5283840/1‑93 (MQ=255)

           aaTAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCAtt                                                                              <  1:6196237/93‑1 (MQ=255)

            aTAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCAttt                                                                             >  2:2763385/1‑93 (MQ=255)

            aTAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCAttt                                                                             >  1:1143653/1‑93 (MQ=255)

            aTAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCAttt                                                                             >  2:4005457/1‑93 (MQ=255)

             tAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTa                                                                            >  1:1463237/1‑93 (MQ=255)

             tAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTa                                                                            >  1:1954263/1‑93 (MQ=255)

             tAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTa                                                                            >  2:4826483/1‑93 (MQ=255)

              aGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTAc                                                                           <  1:796123/93‑1 (MQ=255)

                   aCAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTca                                                                      >  2:360219/1‑93 (MQ=255)

                     aaCGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTcaca                                                                    <  2:2927535/93‑1 (MQ=255)

                       cGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCacaac                                                                  <  2:1604469/93‑1 (MQ=255)

                       cGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCacaac                                                                  <  2:5544621/93‑1 (MQ=255)

                       cGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCacaac                                                                  >  2:3740627/1‑93 (MQ=255)

                       cGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCacaac                                                                  <  2:2305138/93‑1 (MQ=255)

                        gTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCacaaca                                                                 <  2:4735283/93‑1 (MQ=255)

                        gTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCacaaca                                                                 >  1:2915940/1‑93 (MQ=255)

                        gTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCacaaca                                                                 <  2:6171426/93‑1 (MQ=255)

                         tAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACAt                                                                >  1:9058/1‑93 (MQ=255)

                          aaTTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACAtt                                                               <  2:4489729/93‑1 (MQ=255)

                          aaTTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACAtt                                                               <  2:6005037/93‑1 (MQ=255)

                          aaTTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACAtt                                                               >  1:3347082/1‑93 (MQ=255)

                           aTTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTg                                                              <  1:5953156/93‑1 (MQ=255)

                            ttGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTgc                                                             <  1:2468736/93‑1 (MQ=255)

                               tCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCa                                                          <  2:1551841/93‑1 (MQ=255)

                               tCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCa                                                          <  1:4256929/93‑1 (MQ=255)

                                    gcATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGcac                                                     <  2:298429/93‑1 (MQ=255)

                                    gcATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGcac                                                     >  1:3959064/1‑93 (MQ=255)

                                    gcATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGcac                                                     >  2:343768/1‑93 (MQ=255)

                                     cATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGcaca                                                    >  1:3699690/1‑93 (MQ=255)

                                     cATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGcaca                                                    >  1:977899/1‑93 (MQ=255)

                                      aTTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAg                                                   <  2:2177362/93‑1 (MQ=255)

                                       ttCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAgt                                                  >  1:2411114/1‑93 (MQ=255)

                                       ttCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGACTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAgt                                                  >  1:2314869/1‑93 (MQ=255)

                                        tCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAgtg                                                 <  2:4114836/93‑1 (MQ=255)

                                         cccTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAgtgt                                                <  2:1286200/93‑1 (MQ=255)

                                         cccTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAgtgt                                                >  2:2386067/1‑93 (MQ=255)

                                            ttGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCa                                             <  2:3245988/93‑1 (MQ=255)

                                            ttGAGGCCTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCa                                             <  2:3197735/93‑1 (MQ=255)

                                             tGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAg                                            <  1:547417/93‑1 (MQ=255)

                                                ggCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttc                                         >  2:4544508/1‑93 (MQ=255)

                                                ggCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttc                                         >  1:1622429/1‑93 (MQ=255)

                                                  cTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttctt                                       >  1:4711996/1‑93 (MQ=255)

                                                  cTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttctt                                       <  2:4153123/93‑1 (MQ=255)

                                                  cTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttctt                                       <  1:3108757/93‑1 (MQ=255)

                                                  cTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttctt                                       <  2:5200641/93‑1 (MQ=255)

                                                   ttCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttcttc                                      >  2:382799/1‑93 (MQ=255)

                                                   ttCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttcttc                                      >  1:3881918/1‑93 (MQ=255)

                                                   ttCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGttcttc                                      <  2:1199324/93‑1 (MQ=255)

                                                    tCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTtcg                                     <  2:2450135/93‑1 (MQ=255)

                                                    tCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTtcg                                     >  2:404873/1‑93 (MQ=255)

                                                       ccaccaGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTtcgcct                                  <  2:361428/93‑1 (MQ=255)

                                                         accaGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTtcgcctcg                                >  1:4785294/1‑93 (MQ=255)

                                                         accaGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTtcgcctcg                                >  2:5076485/1‑93 (MQ=255)

                                                           caGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTtcgcctcgcc                              <  2:3804639/93‑1 (MQ=255)

                                                            aGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGccc                             >  1:2184784/1‑93 (MQ=255)

                                                             gCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCg                            >  1:5656220/1‑93 (MQ=255)

                                                             gCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCATCGCCCg                            >  1:2816386/1‑93 (MQ=255)

                                                               cccTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCa                          <  2:846663/93‑1 (MQ=255)

                                                               cccTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCa                          >  2:3635099/1‑93 (MQ=255)

                                                                ccTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCgcacgcac                         >  2:705610/1‑93 (MQ=255)

                                                                 cTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCAcc                        >  1:167430/1‑93 (MQ=255)

                                                                 cTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCAcc                        >  2:5792409/1‑93 (MQ=255)

                                                                  tGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCa                       >  2:5617683/1‑93 (MQ=255)

                                                                   gCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAg                      >  2:359565/1‑93 (MQ=255)

                                                                    cTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGt                     <  1:3041971/93‑1 (MQ=255)

                                                                      cACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTca                   <  1:4039203/93‑1 (MQ=255)

                                                                      cACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTca                   <  2:5901281/93‑1 (MQ=255)

                                                                      cACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTca                   >  2:3904364/1‑93 (MQ=255)

                                                                       aCTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTcac                  >  1:1802844/1‑93 (MQ=255)

                                                                       aCTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGCCCAGTTCTTCGCCTCGCCCGCACCAGTcac                  >  2:1887732/1‑93 (MQ=255)

                                                                        cTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACGTTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTcaca                 <  2:5461011/93‑1 (MQ=255)

                                                                         tttCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAg                >  1:2515399/1‑93 (MQ=255)

                                                                           tCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTa              >  1:1311679/1‑93 (MQ=255)

                                                                            cAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTaa             >  1:2752472/1‑93 (MQ=255)

                                                                             aGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAAt            <  2:1412685/93‑1 (MQ=255)

                                                                              gCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATc           >  1:2382689/1‑93 (MQ=255)

                                                                              gCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATc           <  2:4311020/93‑1 (MQ=255)

                                                                                 tGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCgtg        >  1:5425187/1‑93 (MQ=255)

                                                                                     aaCCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGc    >  2:3869190/1‑93 (MQ=255)

                                                                                     aaCCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGc    >  1:5069205/1‑93 (MQ=255)

                                                                                       ccGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCa  >  1:1697179/1‑93 (MQ=255)

                                                                                       ccGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCa  <  1:5008487/93‑1 (MQ=255)

GGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCA  >  NC_000913/3829829‑3830008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTAC  >  NC_000913/3829826‑3830012

CCCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGC                                                                                               <  SRR4302533.2602050/94‑1 (MQ=60)

 CCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCC                                                                                              >  SRR4302533.219436/1‑94 (MQ=60)

 CCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCC                                                                                              <  SRR4302533.3520683/94‑1 (MQ=60)

  CGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCT                                                                                             >  SRR4302533.3957489/1‑94 (MQ=60)

  CGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCT                                                                                             <  SRR4302533.2270824/94‑1 (MQ=60)

   GGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTT                                                                                            <  SRR4302533.4788317/94‑1 (MQ=60)

    GCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTG                                                                                           >  SRR4302533.6302845/1‑94 (MQ=60)

    GCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTG                                                                                           <  SRR4302533.2264077/94‑1 (MQ=60)

     CATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGC                                                                                          >  SRR4302533.516866/1‑94 (MQ=60)

      ATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCA                                                                                         <  SRR4302533.2895805/94‑1 (MQ=60)

      ATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCA                                                                                         <  SRR4302533.4999853/94‑1 (MQ=60)

      ATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCA                                                                                         <  SRR4302533.3610417/94‑1 (MQ=60)

      ATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCA                                                                                         >  SRR4302533.937812/1‑94 (MQ=60)

       TTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAG                                                                                        >  SRR4302533.500221/1‑94 (MQ=60)

       TTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAG                                                                                        <  SRR4302533.2383497/94‑1 (MQ=60)

       TTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAG                                                                                        <  SRR4302533.6343163/94‑1 (MQ=60)

       TTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAG                                                                                        <  SRR4302533.1704830/94‑1 (MQ=60)

       TTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAG                                                                                        <  SRR4302533.6115234/94‑1 (MQ=60)

        TCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGA                                                                                       >  SRR4302533.24909/1‑94 (MQ=60)

        TCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGA                                                                                       <  SRR4302533.265497/94‑1 (MQ=60)

         CCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGAC                                                                                      <  SRR4302533.4147512/94‑1 (MQ=60)

         CCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGAC                                                                                      <  SRR4302533.3949731/94‑1 (MQ=60)

           ATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCA                                                                                    <  SRR4302533.2622953/94‑1 (MQ=60)

             CAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATT                                                                                  >  SRR4302533.5315494/1‑94 (MQ=60)

             CAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATT                                                                                  <  SRR4302533.1030214/94‑1 (MQ=60)

              AATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTT                                                                                 >  SRR4302533.1150473/1‑94 (MQ=60)

              AATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTT                                                                                 <  SRR4302533.6233410/94‑1 (MQ=60)

              AATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTT                                                                                 <  SRR4302533.5903455/94‑1 (MQ=60)

               ATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTA                                                                                >  SRR4302533.1966171/1‑94 (MQ=60)

               ATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTA                                                                                <  SRR4302533.2879481/94‑1 (MQ=60)

               ATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTA                                                                                >  SRR4302533.1472057/1‑94 (MQ=60)

                TAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTAC                                                                               <  SRR4302533.603916/94‑1 (MQ=60)

                TAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTAC                                                                               >  SRR4302533.3644055/1‑94 (MQ=60)

                 AGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACT                                                                              <  SRR4302533.6247393/94‑1 (MQ=60)

                 AGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACT                                                                              <  SRR4302533.800805/94‑1 (MQ=60)

                  GATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTT                                                                             >  SRR4302533.1555890/1‑94 (MQ=60)

                    TTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTC                                                                           <  SRR4302533.5142232/94‑1 (MQ=60)

                    TTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTC                                                                           <  SRR4302533.6010847/94‑1 (MQ=60)

                     TACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCA                                                                          <  SRR4302533.5091799/94‑1 (MQ=60)

                     TACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCA                                                                          <  SRR4302533.5010660/94‑1 (MQ=60)

                     TACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCA                                                                          <  SRR4302533.3029394/94‑1 (MQ=60)

                       CAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACA                                                                        <  SRR4302533.3230675/94‑1 (MQ=60)

                       CAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACA                                                                        >  SRR4302533.2329375/1‑94 (MQ=60)

                       CAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACA                                                                        <  SRR4302533.1102252/94‑1 (MQ=60)

                       CAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACA                                                                        <  SRR4302533.6149047/94‑1 (MQ=60)

                          CGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACA                                                                     >  SRR4302533.3114885/1‑94 (MQ=60)

                          CGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACA                                                                     >  SRR4302533.2899352/1‑94 (MQ=60)

                          CGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACA                                                                     >  SRR4302533.2933821/1‑94 (MQ=60)

                           GTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACAT                                                                    >  SRR4302533.9136/1‑94 (MQ=60)

                           GTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACAT                                                                    <  SRR4302533.1243284/94‑1 (MQ=60)

                            TAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATT                                                                   <  SRR4302533.2450870/94‑1 (MQ=60)

                            TAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATT                                                                   >  SRR4302533.3367762/1‑94 (MQ=60)

                            TAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATT                                                                   <  SRR4302533.1633464/94‑1 (MQ=60)

                             AATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTG                                                                  <  SRR4302533.4058583/94‑1 (MQ=60)

                              ATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGC                                                                 >  SRR4302533.5479789/1‑94 (MQ=60)

                              ATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGC                                                                 <  SRR4302533.5989167/94‑1 (MQ=60)

                              ATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGC                                                                 <  SRR4302533.2990761/94‑1 (MQ=60)

                               TTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCG                                                                <  SRR4302533.2483962/94‑1 (MQ=60)

                               TTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCG                                                                <  SRR4302533.5297312/94‑1 (MQ=60)

                                  TCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAG                                                             <  SRR4302533.4282594/94‑1 (MQ=60)

                                  TCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAG                                                             <  SRR4302533.5010819/94‑1 (MQ=60)

                                   CAGCGCATTCCCTTGAGGCTTCATCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGC                                                            >  SRR4302533.5495722/1‑94 (MQ=60)

                                   CAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGG                                                            <  SRR4302533.47704/94‑1 (MQ=60)

                                   CAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGG                                                            >  SRR4302533.5608792/1‑94 (MQ=60)

                                    AGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGC                                                           >  SRR4302533.614820/1‑94 (MQ=60)

                                      CGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCAC                                                         >  SRR4302533.3356403/1‑94 (MQ=60)

                                      CGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCAC                                                         >  SRR4302533.1348829/1‑94 (MQ=60)

                                      CGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCAC                                                         >  SRR4302533.3983190/1‑94 (MQ=60)

                                       GCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACA                                                        >  SRR4302533.983632/1‑94 (MQ=60)

                                       GCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACA                                                        >  SRR4302533.3722414/1‑94 (MQ=60)

                                         ATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGT                                                      >  SRR4302533.2502420/1‑94 (MQ=60)

                                         ATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGT                                                      >  SRR4302533.2426006/1‑94 (MQ=60)

                                         ATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGACTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGT                                                      >  SRR4302533.2329208/1‑94 (MQ=60)

                                          TTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTG                                                     <  SRR4302533.2399122/94‑1 (MQ=60)

                                           TCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGT                                                    <  SRR4302533.2883917/94‑1 (MQ=60)

                                           TCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGT                                                    <  SRR4302533.2799752/94‑1 (MQ=60)

                                           TCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGT                                                    >  SRR4302533.529295/1‑94 (MQ=60)

                                            CCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGCACCGCCTTGCAGACCATTTCCTTTCACAACATTGCGCAGGATCAGTGTC                                                   >  SRR4302533.2795181/1‑94 (MQ=60)

                                            CCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTC                                                   >  SRR4302533.5049910/1‑94 (MQ=60)

                                            CCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTC                                                   <  SRR4302533.4587766/94‑1 (MQ=60)

                                            CCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTC                                                   >  SRR4302533.5345893/1‑94 (MQ=60)

                                             CCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCC                                                  >  SRR4302533.905011/1‑94 (MQ=60)

                                             CCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCC                                                  <  SRR4302533.2279600/94‑1 (MQ=60)

                                             CCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCC                                                  <  SRR4302533.2462796/94‑1 (MQ=60)

                                              CTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCA                                                 >  SRR4302533.6245150/1‑94 (MQ=60)

                                              CTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCA                                                 >  SRR4302533.18876/1‑94 (MQ=60)

                                                TGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGT                                               >  SRR4302533.958459/1‑94 (MQ=60)

                                                TGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGT                                               <  SRR4302533.550668/94‑1 (MQ=60)

                                                  AGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTC                                             >  SRR4302533.3837173/1‑94 (MQ=60)

                                                  AGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTC                                             >  SRR4302533.1632260/1‑94 (MQ=60)

                                                    GCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTT                                           >  SRR4302533.4740554/1‑94 (MQ=60)

                                                     CTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTC                                          >  SRR4302533.3905607/1‑94 (MQ=60)

                                                     CTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTC                                          <  SRR4302533.2095365/94‑1 (MQ=60)

                                                     CTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTC                                          <  SRR4302533.49157/94‑1 (MQ=60)

                                                     CTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTC                                          >  SRR4302533.1239929/1‑94 (MQ=60)

                                                     CTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTC                                          <  SRR4302533.3127865/94‑1 (MQ=60)

                                                      TTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCG                                         <  SRR4302533.5689689/94‑1 (MQ=60)

                                                      TTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCG                                         <  SRR4302533.4078460/94‑1 (MQ=60)

                                                      TTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCG                                         <  SRR4302533.3592659/94‑1 (MQ=60)

                                                         CCCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCT                                      <  SRR4302533.2551980/94‑1 (MQ=60)

                                                         ACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCT                                      >  SRR4302533.108181/1‑94 (MQ=60)

                                                          CCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTC                                     <  SRR4302533.160245/94‑1 (MQ=60)

                                                           CACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCG                                    >  SRR4302533.4814276/1‑94 (MQ=60)

                                                            ACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGC                                   >  SRR4302533.2924019/1‑94 (MQ=60)

                                                             CCAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCC                                  >  SRR4302533.2229122/1‑94 (MQ=60)

                                                              CAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCC                                 >  SRR4302533.2198253/1‑94 (MQ=60)

                                                              CAGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCC                                 <  SRR4302533.907866/94‑1 (MQ=60)

                                                               AGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCG                                >  SRR4302533.5725705/1‑94 (MQ=60)

                                                               AGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCG                                >  SRR4302533.5690400/1‑94 (MQ=60)

                                                               AGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCG                                >  SRR4302533.696523/1‑94 (MQ=60)

                                                               AGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCG                                <  SRR4302533.1449083/94‑1 (MQ=60)

                                                               AGCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCATCGCCCG                                >  SRR4302533.2833725/1‑94 (MQ=60)

                                                                GCCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGC                               >  SRR4302533.4560508/1‑94 (MQ=60)

                                                                 CCCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCA                              <  SRR4302533.1713909/94‑1 (MQ=60)

                                                                  CCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCAC                             >  SRR4302533.5114880/1‑94 (MQ=60)

                                                                  CCCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCAC                             >  SRR4302533.1685839/1‑94 (MQ=60)

                                                                   CCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACC                            >  SRR4302533.168491/1‑94 (MQ=60)

                                                                   CCTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACC                            <  SRR4302533.176440/94‑1 (MQ=60)

                                                                    CTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCA                           >  SRR4302533.5691886/1‑94 (MQ=60)

                                                                    CTGCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCA                           >  SRR4302533.2081377/1‑94 (MQ=60)

                                                                      GCTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGT                         >  SRR4302533.3657477/1‑94 (MQ=60)

                                                                       CTCACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTC                        <  SRR4302533.3060592/94‑1 (MQ=60)

                                                                         CACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCAC                      <  SRR4302533.4063781/94‑1 (MQ=60)

                                                                         CACTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCAC                      >  SRR4302533.1813820/1‑94 (MQ=60)

                                                                           CTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAG                    >  SRR4302533.3723207/1‑94 (MQ=60)

                                                                           CTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAG                    >  SRR4302533.2530897/1‑94 (MQ=60)

                                                                           CTTTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAG                    <  SRR4302533.3983447/94‑1 (MQ=60)

                                                                             TTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTA                  >  SRR4302533.3516331/1‑94 (MQ=60)

                                                                             TTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTA                  >  SRR4302533.1319552/1‑94 (MQ=60)

                                                                             TTCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTA                  <  SRR4302533.5353099/94‑1 (MQ=60)

                                                                              TCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAA                 >  SRR4302533.2254840/1‑94 (MQ=60)

                                                                              TCAGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAA                 >  SRR4302533.2769350/1‑94 (MQ=60)

                                                                                AGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTACTC               >  SRR4302533.1645596/1‑94 (MQ=60)

                                                                                AGCCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATC               >  SRR4302533.2397422/1‑94 (MQ=60)

                                                                                  CCTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGT             >  SRR4302533.4396528/1‑94 (MQ=60)

                                                                                   CTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTG            >  SRR4302533.5457861/1‑94 (MQ=60)

                                                                                   CTGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTG            >  SRR4302533.3114281/1‑94 (MQ=60)

                                                                                    TGCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGT           >  SRR4302533.2922319/1‑94 (MQ=60)

                                                                                     GCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTT          <  SRR4302533.2234511/94‑1 (MQ=60)

                                                                                     GCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTT          <  SRR4302533.2328658/94‑1 (MQ=60)

                                                                                     GCGAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTT          <  SRR4302533.2582271/94‑1 (MQ=60)

                                                                                       GAACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGC        >  SRR4302533.5099814/1‑94 (MQ=60)

                                                                                        AACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCC       >  SRR4302533.1921038/1‑94 (MQ=60)

                                                                                         ACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCA      <  SRR4302533.2407865/94‑1 (MQ=60)

                                                                                         ACCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCA      >  SRR4302533.1707458/1‑94 (MQ=60)

                                                                                          CCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAG     <  SRR4302533.2746651/94‑1 (MQ=60)

                                                                                          CCGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAG     <  SRR4302533.5038834/94‑1 (MQ=60)

                                                                                           CGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGT    >  SRR4302533.2733985/1‑94 (MQ=60)

                                                                                           CGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGT    >  SRR4302533.1288767/1‑94 (MQ=60)

                                                                                           CGCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATAGTGTTGCCAGT    <  SRR4302533.5842210/94‑1 (MQ=60)

                                                                                            GCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTA   <  SRR4302533.5102646/94‑1 (MQ=60)

                                                                                            GCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTA   <  SRR4302533.1843347/94‑1 (MQ=60)

                                                                                            GCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTA   <  SRR4302533.4393599/94‑1 (MQ=60)

                                                                                            GCCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTA   >  SRR4302533.981064/1‑94 (MQ=60)

                                                                                             CCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTAC  <  SRR4302533.7593/94‑1 (MQ=60)

                                                                                             CCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTAC  >  SRR4302533.5445808/1‑94 (MQ=60)

                                                                                             CCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTAC  <  SRR4302533.3542324/94‑1 (MQ=60)

                                                                                             CCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTAC  >  SRR4302533.1377814/1‑94 (MQ=60)

CCCGGCATTCCATCAATAGATTACAACGTAATTGTCAGCGCATTCCCTTGAGGCTTCACCACCAGCCCCTGCTCACTTTCAGCCTGCGAACCGTCTTGCAGACCATTTACTTTCACAACATTGCGCAGGCACAGTGTCCAGTTCTTCGCCTCGCCCGCACCAGTCACAGTAATCGTGTTGCCAGTAC  >  NC_000913/3829826‑3830012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`