Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,851,411	A→G	intergenic (‑796/‑132)	ivbL ← / → emrD	ilvB operon leader peptide/2‑module integral membrane pump

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,851,411	0	A	G	99.6%	778.4 / ‑5.3	237	intergenic (‑796/‑132)	ivbL/emrD	ilvB operon leader peptide/2‑module integral membrane pump
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (86/150); total (86/151)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 243 total aligned reads displayed.

TTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG  >  NC_000913/3851321‑3851500

tttAGCGTGCGGATTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCa                                                                                         <  1:3680072/93‑1 (MQ=255)

 ttAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCat                                                                                        <  1:4026364/93‑1 (MQ=255)

 ttAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCat                                                                                        <  2:2553075/93‑1 (MQ=255)

  tAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCata                                                                                       <  1:5311665/93‑1 (MQ=255)

  tAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCata                                                                                       >  1:3157807/1‑93 (MQ=255)

   aGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCatat                                                                                      <  2:5183638/93‑1 (MQ=255)

   aGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCatat                                                                                      <  2:2356402/93‑1 (MQ=255)

    gCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATAtt                                                                                     <  2:735656/93‑1 (MQ=255)

      gTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCt                                                                                   <  1:2585921/93‑1 (MQ=255)

       tGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTg                                                                                  >  1:119992/1‑93 (MQ=255)

       tGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTg                                                                                  <  1:1731782/93‑1 (MQ=255)

       tGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTg                                                                                  >  1:5795048/1‑93 (MQ=255)

           ggTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTAGCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGc                                                                              >  1:4447388/1‑93 (MQ=255)

           ggTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGc                                                                              <  2:5242658/93‑1 (MQ=255)

           ggTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGc                                                                              <  1:2934351/93‑1 (MQ=255)

             ttGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTa                                                                            <  2:6223004/93‑1 (MQ=255)

              tGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTaa                                                                           >  2:4134115/1‑93 (MQ=255)

                gtgtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAc                                                                         <  2:3317928/93‑1 (MQ=255)

                gtgtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAc                                                                         >  1:1838831/1‑93 (MQ=255)

                  gtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACaa                                                                       >  1:554868/1‑93 (MQ=255)

                  gtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACaa                                                                       <  2:4990996/93‑1 (MQ=255)

                  gtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACaa                                                                       <  2:1748546/93‑1 (MQ=255)

                     ggATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTc                                                                    <  1:2073133/93‑1 (MQ=255)

                      gatgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTcc                                                                   >  1:6201621/1‑93 (MQ=255)

                      gatgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTcc                                                                   <  2:321888/93‑1 (MQ=255)

                      gatgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTcc                                                                   >  2:1054472/1‑93 (MQ=255)

                      gatgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTcc                                                                   >  1:3790477/1‑93 (MQ=255)

                        tgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTcccc                                                                 <  1:2413951/93‑1 (MQ=255)

                         gcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCa                                                                <  1:5465980/93‑1 (MQ=255)

                          cgatgcTGACGCATCTTATCCGCCCTCCCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTACACAATTCCCCAt                                                               <  2:3075182/93‑1 (MQ=255)

                          cgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAt                                                               <  1:5132327/93‑1 (MQ=255)

                           gatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAtt                                                              <  1:4969470/93‑1 (MQ=255)

                           gatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAtt                                                              <  2:5998041/93‑1 (MQ=255)

                            atgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTc                                                             >  2:5769891/1‑93 (MQ=255)

                             tgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTcc                                                            <  1:737098/93‑1 (MQ=255)

                              gcTGACGCATCTTATCCGCCCTACCATCTCTCCCGTCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCt                                                           <  2:460880/93‑1 (MQ=255)

                              gcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCt                                                           <  1:5082789/93‑1 (MQ=255)

                              gcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCt                                                           <  2:1960753/93‑1 (MQ=255)

                              gcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCt                                                           <  1:3881981/93‑1 (MQ=255)

                              gcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCt                                                           <  1:1378313/93‑1 (MQ=255)

                               cTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTg                                                          <  2:2260646/93‑1 (MQ=255)

                               cTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTg                                                          <  1:78865/93‑1 (MQ=255)

                                tGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTgg                                                         <  1:5946014/93‑1 (MQ=255)

                                tGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTgg                                                         >  2:526297/1‑93 (MQ=255)

                                    gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGta                                                     <  1:2305573/93‑1 (MQ=255)

                                     cATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGtat                                                    >  2:5616183/1‑93 (MQ=255)

                                     cATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGtat                                                    <  1:850195/93‑1 (MQ=255)

                                     cATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGtat                                                    <  2:3718565/93‑1 (MQ=255)

                                      aTCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGtata                                                   <  1:434989/93‑1 (MQ=255)

                                      aTCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGtata                                                   <  2:2601364/93‑1 (MQ=255)

                                        cTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATc                                                 <  1:603335/93‑1 (MQ=255)

                                        cTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATc                                                 <  1:1054359/93‑1 (MQ=255)

                                        cTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATc                                                 <  2:1390089/93‑1 (MQ=255)

                                         ttATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCt                                                >  1:4109047/1‑93 (MQ=255)

                                         ttATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCt                                                <  2:5695790/93‑1 (MQ=255)

                                          tATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTg                                               <  2:2863443/93‑1 (MQ=255)

                                              cGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTa                                           >  1:5241610/1‑93 (MQ=255)

                                                cccTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAAc                                         >  2:5851578/1‑93 (MQ=255)

                                                  cTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAt                                       >  2:3857980/1‑93 (MQ=255)

                                                  cTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAt                                       >  2:2435834/1‑93 (MQ=255)

                                                  cTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAt                                       <  1:5220791/93‑1 (MQ=255)

                                                   tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAtt                                      >  1:500070/1‑93 (MQ=255)

                                                   tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAtt                                      <  1:1569958/93‑1 (MQ=255)

                                                   tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGACGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAtt                                      >  1:3609977/1‑93 (MQ=255)

                                                    aCCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAACCAATTCCCCATTCCTGGCGTATATCTGGCTAACATtc                                     <  1:3956158/93‑1 (MQ=255)

                                                    aCCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtc                                     <  2:3889108/93‑1 (MQ=255)

                                                     ccATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtca                                    <  1:945946/93‑1 (MQ=255)

                                                     ccATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtca                                    <  1:2168610/93‑1 (MQ=255)

                                                       aTCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatc                                  <  2:2118900/93‑1 (MQ=255)

                                                        tctctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatca                                 >  1:4780551/1‑93 (MQ=255)

                                                        tctctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatca                                 >  2:1625983/1‑93 (MQ=255)

                                                        tctctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATtcatca                                 <  2:48059/93‑1 (MQ=255)

                                                         ctctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCaa                                <  1:1595819/93‑1 (MQ=255)

                                                          tctcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAt                               <  1:3354128/93‑1 (MQ=255)

                                                            tcCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAtgt                             <  1:4521214/93‑1 (MQ=255)

                                                              ccGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGa                           <  2:1262027/93‑1 (MQ=255)

                                                               cGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAt                          <  2:2797464/93‑1 (MQ=255)

                                                               cGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAt                          <  1:559393/93‑1 (MQ=255)

                                                                 gCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAg                        <  2:5373364/93‑1 (MQ=255)

                                                                  cAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGa                       <  2:4352082/93‑1 (MQ=255)

                                                                   aaCATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAt                      >  1:2797245/1‑93 (MQ=255)

                                                                   aaCATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAt                      >  2:1524736/1‑93 (MQ=255)

                                                                    aCATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAtt                     <  2:17174/93‑1 (MQ=255)

                                                                      aTTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTcc                   >  2:3984933/1‑93 (MQ=255)

                                                                      aTTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTcc                   >  2:4735330/1‑93 (MQ=255)

                                                                      aTTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTcc                   >  2:448724/1‑93 (MQ=255)

                                                                         tATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGGTTCctct                >  1:1865064/1‑93 (MQ=255)

                                                                          aTTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCtctc               <  1:6155549/93‑1 (MQ=255)

                                                                          aTTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCtctc               >  1:4619035/1‑93 (MQ=255)

                                                                           ttGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTcc              <  2:4320284/93‑1 (MQ=255)

                                                                              ccGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGc           <  2:549606/93‑1 (MQ=255)

                                                                              ccGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGc           <  2:1914238/93‑1 (MQ=255)

                                                                               cGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCa          >  2:3102949/1‑93 (MQ=255)

                                                                                 cTTTTGTTTGCATATTCTGCCGCTAAATAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCAtt        <  2:886399/93‑1 (MQ=255)

                                                                                   tttgtttgCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTa      >  2:505352/1‑93 (MQ=255)

                                                                                   tttgtttgCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTa      <  1:1128276/93‑1 (MQ=255)

                                                                                    ttGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTAt     <  2:4306681/93‑1 (MQ=255)

                                                                                     tGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATg    <  1:1633203/93‑1 (MQ=255)

                                                                                     tGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGGATATCTGGCTAACAGTCATCAATGTGATAGATTCCTCTCCCGCAGTTATg    >  2:6302956/1‑93 (MQ=255)

                                                                                      gTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATgg   <  1:5190310/93‑1 (MQ=255)

TTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG  >  NC_000913/3851321‑3851500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATG  >  NC_000913/3851318‑3851504

ATATTTAGCGTGCGGGTTGGTCTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAGCATTTATTGCCGCTTTTGTTTG                                                                                               <  SRR4302533.1646475/94‑1 (MQ=60)

 TATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGC                                                                                              <  SRR4302533.2624719/94‑1 (MQ=60)

 TATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGC                                                                                              >  SRR4302533.5729887/1‑94 (MQ=60)

   TTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCAT                                                                                            <  SRR4302533.1876011/94‑1 (MQ=60)

   TTTAGCGTGCGGATTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCAT                                                                                            <  SRR4302533.3702688/94‑1 (MQ=60)

    TTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATA                                                                                           <  SRR4302533.4050874/94‑1 (MQ=60)

    TTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATA                                                                                           >  SRR4302533.3177241/1‑94 (MQ=60)

     TAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATAT                                                                                          <  SRR4302533.5343498/94‑1 (MQ=60)

     TAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATAT                                                                                          >  SRR4302533.1589499/1‑94 (MQ=60)

       GCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTC                                                                                        <  SRR4302533.5902211/94‑1 (MQ=60)

        CGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCT                                                                                       >  SRR4302533.128832/1‑94 (MQ=60)

        CGTGCGGGTTGGTGTCGGATGAGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCT                                                                                       <  SRR4302533.5154967/94‑1 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                      <  SRR4302533.2601820/94‑1 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                      >  SRR4302533.1061702/1‑94 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                      >  SRR4302533.5830060/1‑94 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                      >  SRR4302533.120752/1‑94 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                      <  SRR4302533.646959/94‑1 (MQ=60)

         GTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTG                                                                                      >  SRR4302533.5811898/1‑94 (MQ=60)

          TGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGC                                                                                     <  SRR4302533.1742282/94‑1 (MQ=60)

           GCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCC                                                                                    <  SRR4302533.5237969/94‑1 (MQ=60)

             GGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTAGCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGC                                                                                  >  SRR4302533.4474285/1‑94 (MQ=60)

             GGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGC                                                                                  >  SRR4302533.4022319/1‑94 (MQ=60)

             GGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCCGCAACCTTTATTGCCGCTTTTGTTTGCATATTCTGCCGC                                                                                  >  SRR4302533.5391189/1‑94 (MQ=60)

              GGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCT                                                                                 <  SRR4302533.2952293/94‑1 (MQ=60)

              GGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCT                                                                                 >  SRR4302533.4694830/1‑94 (MQ=60)

                  GGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAC                                                                             <  SRR4302533.3296715/94‑1 (MQ=60)

                  GGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAC                                                                             >  SRR4302533.5056055/1‑94 (MQ=60)

                  GGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAAC                                                                             >  SRR4302533.1850046/1‑94 (MQ=60)

                    TGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAA                                                                           >  SRR4302533.558157/1‑94 (MQ=60)

                     GTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAT                                                                          >  SRR4302533.5297847/1‑94 (MQ=60)

                     GTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAAT                                                                          >  SRR4302533.2159019/1‑94 (MQ=60)

                      TCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATT                                                                         <  SRR4302533.1712127/94‑1 (MQ=60)

                        GGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCC                                                                       >  SRR4302533.6238817/1‑94 (MQ=60)

                        GGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCC                                                                       >  SRR4302533.3813687/1‑94 (MQ=60)

                        GGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCC                                                                       <  SRR4302533.2085902/94‑1 (MQ=60)

                          ATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCC                                                                     <  SRR4302533.2843197/94‑1 (MQ=60)

                          ATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCC                                                                     <  SRR4302533.3833745/94‑1 (MQ=60)

                           TGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCA                                                                    >  SRR4302533.2004928/1‑94 (MQ=60)

                           TGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCA                                                                    <  SRR4302533.2428864/94‑1 (MQ=60)

                            GCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAT                                                                   <  SRR4302533.4574014/94‑1 (MQ=60)

                            GCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAT                                                                   <  SRR4302533.6223911/94‑1 (MQ=60)

                            GCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCAT                                                                   <  SRR4302533.5498924/94‑1 (MQ=60)

                             CGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATT                                                                  >  SRR4302533.3774919/1‑94 (MQ=60)

                             CGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATT                                                                  <  SRR4302533.5163332/94‑1 (MQ=60)

                              GATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTC                                                                 <  SRR4302533.4999599/94‑1 (MQ=60)

                                TGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCT                                                               <  SRR4302533.741436/94‑1 (MQ=60)

                                 GCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTG                                                              <  SRR4302533.1386606/94‑1 (MQ=60)

                                 GCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTG                                                              >  SRR4302533.819265/1‑94 (MQ=60)

                                 GCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTG                                                              <  SRR4302533.3905670/94‑1 (MQ=60)

                                 GCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTG                                                              <  SRR4302533.5113510/94‑1 (MQ=60)

                                 GCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTG                                                              >  SRR4302533.5267714/1‑94 (MQ=60)

                                  CTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGG                                                             <  SRR4302533.4892523/94‑1 (MQ=60)

                                  CTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGG                                                             <  SRR4302533.5645810/94‑1 (MQ=60)

                                  CTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGG                                                             <  SRR4302533.5561652/94‑1 (MQ=60)

                                  CTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGG                                                             <  SRR4302533.79369/94‑1 (MQ=60)

                                  CTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGG                                                             <  SRR4302533.2503772/94‑1 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                            <  SRR4302533.9064/94‑1 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                            <  SRR4302533.1595142/94‑1 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                            <  SRR4302533.412998/94‑1 (MQ=60)

                                   TGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGC                                                            <  SRR4302533.5981972/94‑1 (MQ=60)

                                    GACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCG                                                           <  SRR4302533.2408265/94‑1 (MQ=60)

                                       GCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTAT                                                        >  SRR4302533.3716731/1‑94 (MQ=60)

                                       GCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTAT                                                        <  SRR4302533.2319858/94‑1 (MQ=60)

                                       GCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTAT                                                        <  SRR4302533.4547922/94‑1 (MQ=60)

                                        CATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATA                                                       <  SRR4302533.855171/94‑1 (MQ=60)

                                        CATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATA                                                       <  SRR4302533.2596247/94‑1 (MQ=60)

                                         ATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATAT                                                      <  SRR4302533.437582/94‑1 (MQ=60)

                                         ATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATAT                                                      >  SRR4302533.768783/1‑94 (MQ=60)

                                         ATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATAT                                                      >  SRR4302533.4435475/1‑94 (MQ=60)

                                         ATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATAT                                                      >  SRR4302533.2312973/1‑94 (MQ=60)

                                           CTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCT                                                    <  SRR4302533.606880/94‑1 (MQ=60)

                                           CTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCT                                                    >  SRR4302533.4134029/1‑94 (MQ=60)

                                           CTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCT                                                    <  SRR4302533.1060566/94‑1 (MQ=60)

                                                CCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTA                                               >  SRR4302533.5273118/1‑94 (MQ=60)

                                                 CGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAA                                              >  SRR4302533.5182945/1‑94 (MQ=60)

                                                   CCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACA                                            <  SRR4302533.3679284/94‑1 (MQ=60)

                                                    CCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACAT                                           >  SRR4302533.1927283/1‑94 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                          <  SRR4302533.5252210/94‑1 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                          >  SRR4302533.503045/1‑94 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGACGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                          >  SRR4302533.3632196/1‑94 (MQ=60)

                                                     CTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATT                                          <  SRR4302533.5307082/94‑1 (MQ=60)

                                                      TACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTC                                         <  SRR4302533.1579415/94‑1 (MQ=60)

                                                       ACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAACCAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCA                                        <  SRR4302533.3980274/94‑1 (MQ=60)

                                                       ACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCA                                        >  SRR4302533.95915/1‑94 (MQ=60)

                                                        CCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCAT                                       <  SRR4302533.951508/94‑1 (MQ=60)

                                                        CCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCAT                                       <  SRR4302533.4902002/94‑1 (MQ=60)

                                                        CCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCAT                                       <  SRR4302533.5206355/94‑1 (MQ=60)

                                                        CCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCAT                                       <  SRR4302533.2181950/94‑1 (MQ=60)

                                                        CCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCAT                                       <  SRR4302533.4170858/94‑1 (MQ=60)

                                                          ATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCA                                     >  SRR4302533.4809513/1‑94 (MQ=60)

                                                          ATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCA                                     >  SRR4302533.6269550/1‑94 (MQ=60)

                                                          ATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCA                                     <  SRR4302533.5609643/94‑1 (MQ=60)

                                                            CTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAT                                   <  SRR4302533.822885/94‑1 (MQ=60)

                                                            CTCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAT                                   <  SRR4302533.1605474/94‑1 (MQ=60)

                                                             TCTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATG                                  <  SRR4302533.3374854/94‑1 (MQ=60)

                                                              CTCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATGCTGCCGCTAAACAATGCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGT                                 <  SRR4302533.2634265/94‑1 (MQ=60)

                                                               TCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTG                                <  SRR4302533.6005969/94‑1 (MQ=60)

                                                               TCCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTG                                <  SRR4302533.4548589/94‑1 (MQ=60)

                                                                CCCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGA                               >  SRR4302533.5048682/1‑94 (MQ=60)

                                                                 CCGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATACCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAT                              <  SRR4302533.1723453/94‑1 (MQ=60)

                                                                  CGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAACCAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATA                             <  SRR4302533.1153552/94‑1 (MQ=60)

                                                                  CGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATA                             <  SRR4302533.3033338/94‑1 (MQ=60)

                                                                  CGGCAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATA                             <  SRR4302533.562716/94‑1 (MQ=60)

                                                                     CAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAT                          >  SRR4302533.2224981/1‑94 (MQ=60)

                                                                     CAACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAT                          >  SRR4302533.2814449/1‑94 (MQ=60)

                                                                      AACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATT                         <  SRR4302533.3567885/94‑1 (MQ=60)

                                                                      AACATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATT                         >  SRR4302533.1624566/1‑94 (MQ=60)

                                                                        CATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCC                       >  SRR4302533.1804608/1‑94 (MQ=60)

                                                                         ATTTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCT                      <  SRR4302533.3950540/94‑1 (MQ=60)

                                                                           TTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGGTTCCTCT                    >  SRR4302533.1876441/1‑94 (MQ=60)

                                                                           TTATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCT                    <  SRR4302533.4494765/94‑1 (MQ=60)

                                                                            TATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTC                   >  SRR4302533.137796/1‑94 (MQ=60)

                                                                            TATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTC                   >  SRR4302533.4647026/1‑94 (MQ=60)

                                                                             ATTGCCGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCC                  <  SRR4302533.6192582/94‑1 (MQ=60)

                                                                                  CGCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCAT             >  SRR4302533.3424104/1‑94 (MQ=60)

                                                                                   GCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATT            >  SRR4302533.4009448/1‑94 (MQ=60)

                                                                                   GCTTTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATC            >  SRR4302533.6087021/1‑94 (MQ=60)

                                                                                      TTTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTAT         <  SRR4302533.1134981/94‑1 (MQ=60)

                                                                                       TTGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATG        <  SRR4302533.5536104/94‑1 (MQ=60)

                                                                                        TGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGG       >  SRR4302533.3126902/1‑94 (MQ=60)

                                                                                        TGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGG       <  SRR4302533.1643094/94‑1 (MQ=60)

                                                                                        TGTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGG       <  SRR4302533.5025686/94‑1 (MQ=60)

                                                                                         GTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG      <  SRR4302533.6095633/94‑1 (MQ=60)

                                                                                         GTTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGG      <  SRR4302533.5221626/94‑1 (MQ=60)

                                                                                          TTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGCTAGATTCCTCTCCCGCATTTATGGGA     >  SRR4302533.5961245/1‑94 (MQ=60)

                                                                                          TTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGA     >  SRR4302533.521723/1‑94 (MQ=60)

                                                                                          TTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGA     <  SRR4302533.428324/94‑1 (MQ=60)

                                                                                          TTTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGA     <  SRR4302533.1538880/94‑1 (MQ=60)

                                                                                           TTGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAA    >  SRR4302533.1796780/1‑94 (MQ=60)

                                                                                            TGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT   <  SRR4302533.1005124/94‑1 (MQ=60)

                                                                                            TGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT   <  SRR4302533.5076373/94‑1 (MQ=60)

                                                                                            TGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT   <  SRR4302533.5076372/94‑1 (MQ=60)

                                                                                            TGCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCATATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAAT   <  SRR4302533.2876447/94‑1 (MQ=60)

                                                                                             GCATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATG  <  SRR4302533.6063397/94‑1 (MQ=60)

ATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATG  >  NC_000913/3851318‑3851504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`