Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,874,579	A→G	M1T (ATG→ACG) †	yidA ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,874,579	0	A	G	100.0%	719.4 / NA	219	M1T (ATG→ACG) †	yidA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (102/117); total (102/117)

Only 100 of 234 total aligned reads displayed.

GCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCA  >  NC_000913/3874489‑3874668

  ggCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAg                                                                                       <  1:3128852/93‑1 (MQ=255)

  ggCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAg                                                                                       <  2:4722070/93‑1 (MQ=255)

  ggCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAg                                                                                       <  2:367448/93‑1 (MQ=255)

        cGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTcccc                                                                                 <  2:1758707/93‑1 (MQ=255)

        cGCATTTTGAACGGCGGGGGGAATGGGGTGATCGGGGAGCAGAAGGGGGCCATCCATATCGATAGCAATGAGGTTAATAGACGTGAGGTcccc                                                                                 >  2:6132718/1‑93 (MQ=255)

         gCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCa                                                                                <  2:2333911/93‑1 (MQ=255)

         gCATTTTTAACGGCGGGGGGAATGGGGTGGTCGGGGAGCAGAAGGGGGGCATCCCTATCGATAGCAATGAGGTTTATAACCGTGAGGTccccc                                                                                >  2:270877/1‑92 (MQ=255)

          cATTTTTAACGGCGGGTGGAATGGGGTGGTCGGGGAGCAGAAGGGGGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTTCCCAg                                                                               >  2:980069/1‑93 (MQ=255)

            tttttAACGGCGGGGGAAATGGTGTGATCGGGCAGCAGAAGGGGGGCATCCATATCGATAGCAATGAGTTTAATAGACGTGAGGTTCCCAggg                                                                             >  2:4982727/1‑92 (MQ=255)

             ttttAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTa                                                                            <  2:5731845/93‑1 (MQ=255)

             ttttAACGGCGGGTGAAATGGGGTGATCGGGGAGCAGAAGGGGGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAggga                                                                            >  2:1050808/1‑91 (MQ=255)

             ttttAACGGCGGGGGGAATGGTGTGGTCGGGGAGCAGAAGGGGGGCATCCATATCGATAGCAATGAGGTTTATAGCCGTGGGGTGCCCAggga                                                                            >  2:5356411/1‑91 (MQ=255)

                tAACGGCGGGGGAAATGGGGTGATCGGGCAGCAGAAGGGGGGCATCCCCATCGATAGCAAAAAGGTTTATAACCCTGAGGTCCCCACGGAGAt                                                                         >  2:877920/1‑93 (MQ=255)

                    ggcggGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGt                                                                     <  2:4404695/93‑1 (MQ=255)

                     ccggGTGATATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGtt                                                                    >  1:5944645/2‑93 (MQ=255)

                       gggTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTcc                                                                  <  2:5998991/93‑1 (MQ=255)

                       gggTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTcc                                                                  <  1:4136625/93‑1 (MQ=255)

                        ggTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCt                                                                 >  2:4968450/1‑93 (MQ=255)

                        ggTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCt                                                                 >  2:1503325/1‑93 (MQ=255)

                        ggTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCt                                                                 <  1:6028534/93‑1 (MQ=255)

                         gTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTg                                                                >  2:4750140/1‑93 (MQ=255)

                         gTGAAATGGTGTAATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTg                                                                <  2:4198177/93‑1 (MQ=255)

                          tGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGa                                                               <  1:6064970/93‑1 (MQ=255)

                          ggAAATGGTGTGATCGGGCAGCAGAAGGGTTCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGa                                                               <  1:3690636/92‑1 (MQ=255)

                              aTGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCa                                                           <  2:3199802/93‑1 (MQ=255)

                               tGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCAt                                                          >  1:5368572/1‑93 (MQ=255)

                               tGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCAt                                                          <  1:5175597/93‑1 (MQ=255)

                                 gtgtGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGc                                                        <  2:5961320/93‑1 (MQ=255)

                                 gtgtGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGc                                                        >  1:5593088/1‑93 (MQ=255)

                                  tgtgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCt                                                       >  2:4320160/1‑93 (MQ=255)

                                   gtgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTa                                                      >  2:5141177/1‑93 (MQ=255)

                                    tgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTaa                                                     <  1:3336081/93‑1 (MQ=255)

                                    tgATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTaa                                                     <  1:4956599/93‑1 (MQ=255)

                                      aTCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAcg                                                   >  2:3105951/1‑93 (MQ=255)

                                      aTCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAcg                                                   <  2:3663073/93‑1 (MQ=255)

                                       tCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAcgc                                                  >  2:2991211/1‑93 (MQ=255)

                                       tCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAcgc                                                  >  1:353508/1‑93 (MQ=255)

                                        cGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAcgcg                                                 >  1:4731850/1‑93 (MQ=255)

                                         gggCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGa                                                <  2:2022389/93‑1 (MQ=255)

                                            cagcagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTc                                             >  1:5791119/1‑93 (MQ=255)

                                             agcagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTcc                                            >  1:813739/1‑93 (MQ=255)

                                              gcagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCg                                           >  1:1001907/1‑93 (MQ=255)

                                               cagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGc                                          <  2:1900617/93‑1 (MQ=255)

                                               cagAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGc                                          <  2:5784361/93‑1 (MQ=255)

                                                 gAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTc                                        >  1:1905471/1‑93 (MQ=255)

                                                 gAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTc                                        >  2:487158/1‑93 (MQ=255)

                                                 gAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTc                                        >  1:4867423/1‑93 (MQ=255)

                                                   aGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCaa                                      <  1:3298230/93‑1 (MQ=255)

                                                     ggTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCaaaa                                    <  1:696726/93‑1 (MQ=255)

                                                       tGCCATCCATATCGATAGCAATGAGCTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAAt                                  >  2:5211966/1‑93 (MQ=255)

                                                         ccatccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCa                                <  1:140294/93‑1 (MQ=255)

                                                         ccatccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCa                                <  1:2066242/93‑1 (MQ=255)

                                                         ccatccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCa                                <  2:5007519/93‑1 (MQ=255)

                                                          catccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAg                               <  1:1510161/93‑1 (MQ=255)

                                                          catccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAg                               <  2:158250/93‑1 (MQ=255)

                                                            tccatATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTa                             >  1:2590428/1‑93 (MQ=255)

                                                               atatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaa                          >  2:170574/1‑93 (MQ=255)

                                                               atatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaa                          >  1:4231469/1‑93 (MQ=255)

                                                               atatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaa                          <  2:3809345/93‑1 (MQ=255)

                                                                tatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaac                         >  1:2767090/1‑93 (MQ=255)

                                                                tatCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaac                         <  1:5668329/93‑1 (MQ=255)

                                                                 atCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaaca                        >  2:3573924/1‑93 (MQ=255)

                                                                 atCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTacaaca                        <  2:5083997/93‑1 (MQ=255)

                                                                   cGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAcc                      <  1:6286853/93‑1 (MQ=255)

                                                                   cGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAcc                      <  1:5149206/93‑1 (MQ=255)

                                                                    gATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAccc                     <  1:455643/93‑1 (MQ=255)

                                                                    gATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAccc                     <  1:2632757/93‑1 (MQ=255)

                                                                    gATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAccc                     >  2:692521/1‑93 (MQ=255)

                                                                    gATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACAccc                     <  2:4006704/93‑1 (MQ=255)

                                                                     aTAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCg                    >  2:2702892/1‑93 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGa                   <  1:444174/93‑1 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGa                   >  2:658019/1‑93 (MQ=255)

                                                                      tAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGa                   >  1:5222197/1‑93 (MQ=255)

                                                                        gCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAgg                 >  2:539861/1‑93 (MQ=255)

                                                                         cAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAggg                <  2:4959641/93‑1 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGa               >  1:3816300/1‑93 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGa               >  2:2687743/1‑93 (MQ=255)

                                                                          aaTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGa               >  1:4334146/1‑93 (MQ=255)

                                                                           aTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGaa              >  2:1347909/1‑93 (MQ=255)

                                                                           aTGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGaa              >  1:3611764/1‑93 (MQ=255)

                                                                            tGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGaaa             <  1:481170/93‑1 (MQ=255)

                                                                               gTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAgg          >  1:546807/1‑93 (MQ=255)

                                                                               gTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAgg          >  1:1308341/1‑93 (MQ=255)

                                                                               gTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAgg          >  1:386345/1‑93 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAACATCAGTACAACACCCGAGGGAAAAggg         >  1:4381978/1‑93 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAggg         <  1:162281/93‑1 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAggg         <  2:3877132/93‑1 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAggg         >  2:1977005/1‑93 (MQ=255)

                                                                                tttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAggg         <  2:1615304/93‑1 (MQ=255)

                                                                                 ttAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAgggg        >  1:2428386/1‑93 (MQ=255)

                                                                                  tAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAggggg       >  1:4055439/1‑93 (MQ=255)

                                                                                   aaTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTTCAACCCCCGAGGGAAAAGGGGGa      <  2:1144305/93‑1 (MQ=255)

                                                                                   aaTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACTCCCGAGGGAAAAGGGGGa      <  1:2245075/93‑1 (MQ=255)

                                                                                   aaTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGa      >  2:933230/1‑93 (MQ=255)

                                                                                   aaTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGa      >  1:3410103/1‑93 (MQ=255)

                                                                                   aaTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGa      >  2:2583471/1‑93 (MQ=255)

                                                                                    aTAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTAAAAAATCAGTACAACACCCGAGGGAAAAGGGGGAt     <  1:1034083/93‑1 (MQ=255)

                                                                                     tAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATg    >  2:5581716/1‑93 (MQ=255)

                                                                                     tAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATg    >  2:2351/1‑93 (MQ=255)

                                                                                       gCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCa  >  1:4212946/1‑93 (MQ=255)

GCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCA  >  NC_000913/3874489‑3874668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCTGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGC  >  NC_000913/3874486‑3874672

GCTGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCG                                                                                               <  SRR4302533.1727885/94‑1 (MQ=60)

  TGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTG                                                                                             <  SRR4302533.951165/94‑1 (MQ=60)

    CGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAG                                                                                           <  SRR4302533.5142557/94‑1 (MQ=60)

     GGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGT                                                                                          <  SRR4302533.3148086/94‑1 (MQ=60)

     GGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGT                                                                                          <  SRR4302533.784920/94‑1 (MQ=60)

     GGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGT                                                                                          <  SRR4302533.5441119/94‑1 (MQ=60)

     GGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGGGCCCTCCATATCGATAGCAATGAGTTTAATAGCCGTGAGT                                                                                          >  SRR4302533.822590/1‑94 (MQ=60)

      GCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTT                                                                                         <  SRR4302533.6178990/94‑1 (MQ=60)

       CAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTC                                                                                        <  SRR4302533.4890047/94‑1 (MQ=60)

       CAATCGCATTTTTAACGGCGGGGGAAATGGGGTGGTCGGGCAGCCGAAGGGGGCCATCCATATCGATAGCAATGAGTTTTATAGCCGTGAGTTC                                                                                        >  SRR4302533.3865081/1‑94 (MQ=60)

         ATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCC                                                                                      <  SRR4302533.2629617/94‑1 (MQ=60)

         ATCGCATTTTTAACGGCGGGGGAAATGGTGTGATCGGGCAGGAGAAGGGTGGCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCC                                                                                      >  SRR4302533.3617772/1‑94 (MQ=60)

           CGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCA                                                                                    <  SRR4302533.1523952/94‑1 (MQ=60)

           CGCATTTTTAACGGCGGGGGGAATGGGGTGGTCGGGCAGGAGAAGGGGGCCCTCCATATCGATAGCAATGAGGTTAATAACCGTGAGTTTCCCA                                                                                    >  SRR4302533.91626/1‑94 (MQ=32)

            GCATTTTTAACGGCGGGGGGAATGGGGTGGTCGGGGAGCCGAAGGGGGGCATCCATATTGATAGCAATGAGTTTAATAACCGTGAGTTCCCCAG                                                                                   >  SRR4302533.437241/1‑94 (MQ=32)

             CATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGG                                                                                  <  SRR4302533.415683/94‑1 (MQ=60)

                     ACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGG                                                                          <  SRR4302533.5302171/94‑1 (MQ=60)

                      CGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGT                                                                         <  SRR4302533.493946/94‑1 (MQ=60)

                       GCCGGGTGATATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTT                                                                        >  SRR4302533.5980595/1‑94 (MQ=60)

                        GCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTC                                                                       >  SRR4302533.3546214/1‑94 (MQ=60)

                         GGGGTGAAATGGTGTGATCGGGCAGCAGAAGGTTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCC                                                                      <  SRR4302533.1472756/94‑1 (MQ=60)

                         CGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCC                                                                      <  SRR4302533.4934721/94‑1 (MQ=60)

                         CGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCC                                                                      >  SRR4302533.1033117/1‑94 (MQ=60)

                          GGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCT                                                                     <  SRR4302533.4161729/94‑1 (MQ=60)

                           GGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTG                                                                    <  SRR4302533.6065072/94‑1 (MQ=60)

                             TGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGAC                                                                  <  SRR4302533.6101680/94‑1 (MQ=60)

                             GGAAATGGTGTGATCGGGCAGCAGAAGGGTTCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGAC                                                                  <  SRR4302533.3713312/94‑1 (MQ=60)

                              GAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACC                                                                 <  SRR4302533.1897377/94‑1 (MQ=60)

                                 ATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCAT                                                              <  SRR4302533.6012012/94‑1 (MQ=60)

                                 ATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCAT                                                              <  SRR4302533.2588431/94‑1 (MQ=60)

                                 ATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCAT                                                              >  SRR4302533.4730743/1‑94 (MQ=60)

                                 ATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCAT                                                              >  SRR4302533.5400822/1‑94 (MQ=60)

                                  TGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATG                                                             <  SRR4302533.5206856/94‑1 (MQ=60)

                                  TGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATG                                                             <  SRR4302533.2773995/94‑1 (MQ=60)

                                   GGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGC                                                            >  SRR4302533.5626877/1‑94 (MQ=60)

                                    GTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATACCCGGGAGTTCCCCAGGAAGATTGGTTCCTGACCCATcca                                                           >  SRR4302533.1342655/1‑91 (MQ=60)

                                     TGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTA                                                          >  SRR4302533.2337082/1‑94 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        <  SRR4302533.3356696/94‑1 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        <  SRR4302533.269670/94‑1 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        >  SRR4302533.592489/1‑94 (MQ=60)

                                       TGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAAC                                                        <  SRR4302533.4986622/94‑1 (MQ=60)

                                        GATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACG                                                       <  SRR4302533.4569909/94‑1 (MQ=60)

                                        GATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACG                                                       <  SRR4302533.6122178/94‑1 (MQ=60)

                                         ATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGC                                                      >  SRR4302533.645175/1‑94 (MQ=60)

                                         ATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGC                                                      >  SRR4302533.355665/1‑94 (MQ=60)

                                          TCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCG                                                     >  SRR4302533.4760537/1‑94 (MQ=60)

                                           CGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGA                                                    <  SRR4302533.5187775/94‑1 (MQ=60)

                                              GCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTC                                                 >  SRR4302533.5826106/1‑94 (MQ=60)

                                               CAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCC                                                >  SRR4302533.818500/1‑94 (MQ=60)

                                               CAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCC                                                <  SRR4302533.4044401/94‑1 (MQ=60)

                                                AGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCG                                               <  SRR4302533.4767296/94‑1 (MQ=60)

                                                AGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCG                                               >  SRR4302533.1007757/1‑94 (MQ=60)

                                                   AGAAGGGTGCCATCCATATTGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGCCCCATGCTAACGCGACTCCGCTC                                            >  SRR4302533.3872516/1‑94 (MQ=60)

                                                   AGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTC                                            >  SRR4302533.1917096/1‑94 (MQ=60)

                                                   AGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTC                                            >  SRR4302533.4896919/1‑94 (MQ=60)

                                                     AAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAA                                          >  SRR4302533.3338905/1‑94 (MQ=60)

                                                      AGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAA                                         >  SRR4302533.3573824/1‑94 (MQ=60)

                                                      AGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAA                                         <  SRR4302533.3318585/94‑1 (MQ=60)

                                                        GGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAA                                       <  SRR4302533.700847/94‑1 (MQ=60)

                                                           GCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCA                                    >  SRR4302533.3870383/1‑94 (MQ=60)

                                                           GCCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCA                                    <  SRR4302533.4372311/94‑1 (MQ=60)

                                                            CCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAG                                   <  SRR4302533.141188/94‑1 (MQ=60)

                                                            CCATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAG                                   <  SRR4302533.2078975/94‑1 (MQ=60)

                                                            CCATCCATATCGATAGCAATGAGCTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAG                                   <  SRR4302533.4283329/94‑1 (MQ=60)

                                                             CATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGT                                  <  SRR4302533.1519263/94‑1 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 <  SRR4302533.4380890/94‑1 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 >  SRR4302533.2606347/1‑94 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 >  SRR4302533.5253166/1‑94 (MQ=60)

                                                              ATCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTA                                 >  SRR4302533.3632756/1‑94 (MQ=60)

                                                               TCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTAC                                >  SRR4302533.3430913/1‑94 (MQ=60)

                                                               TCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTAC                                >  SRR4302533.2377603/1‑94 (MQ=60)

                                                               TCCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTAC                                <  SRR4302533.4735782/94‑1 (MQ=60)

                                                                CCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACA                               <  SRR4302533.593169/94‑1 (MQ=60)

                                                                CCATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACA                               <  SRR4302533.4253759/94‑1 (MQ=60)

                                                                 CATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAA                              >  SRR4302533.4257045/1‑94 (MQ=60)

                                                                  ATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCTCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAAC                             >  SRR4302533.4219685/1‑94 (MQ=60)

                                                                  ATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAAC                             >  SRR4302533.116209/1‑94 (MQ=60)

                                                                  ATATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAAC                             >  SRR4302533.2784064/1‑94 (MQ=60)

                                                                   TATCGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACA                            <  SRR4302533.5702569/94‑1 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCG                         >  SRR4302533.6087448/1‑94 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         <  SRR4302533.5180316/94‑1 (MQ=60)

                                                                      CGATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCC                         <  SRR4302533.6324361/94‑1 (MQ=60)

                                                                       GATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG                        <  SRR4302533.2648937/94‑1 (MQ=60)

                                                                       GATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG                        <  SRR4302533.5685220/94‑1 (MQ=60)

                                                                       GATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCG                        <  SRR4302533.458368/94‑1 (MQ=60)

                                                                        ATAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGA                       >  SRR4302533.5253619/1‑94 (MQ=60)

                                                                         TAGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAG                      <  SRR4302533.446829/94‑1 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGG                     >  SRR4302533.5245771/1‑94 (MQ=60)

                                                                          AGCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGG                     <  SRR4302533.5520766/94‑1 (MQ=60)

                                                                           GCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGG                    >  SRR4302533.5754281/1‑94 (MQ=60)

                                                                           GCAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGG                    <  SRR4302533.4237922/94‑1 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   <  SRR4302533.3766629/94‑1 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   >  SRR4302533.3839636/1‑94 (MQ=60)

                                                                            CAATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGA                   >  SRR4302533.4360260/1‑94 (MQ=60)

                                                                             AATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAA                  >  SRR4302533.3633993/1‑94 (MQ=60)

                                                                             AATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAA                  >  SRR4302533.3633992/1‑94 (MQ=60)

                                                                              ATGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAA                 >  SRR4302533.1864363/1‑94 (MQ=60)

                                                                               TGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA                <  SRR4302533.2844685/94‑1 (MQ=60)

                                                                               TGAGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAA                <  SRR4302533.484045/94‑1 (MQ=60)

                                                                                 AGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGG              >  SRR4302533.550055/1‑94 (MQ=60)

                                                                                 AGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGG              >  SRR4302533.1374438/1‑94 (MQ=60)

                                                                                 AGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGG              <  SRR4302533.3203849/94‑1 (MQ=60)

                                                                                 AGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGG              >  SRR4302533.1316195/1‑94 (MQ=60)

                                                                                 AGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGG              >  SRR4302533.388678/1‑94 (MQ=60)

                                                                                 AGTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGG              >  SRR4302533.2038953/1‑94 (MQ=60)

                                                                                  GTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAACATCAGTACAACACCCGAGGGAAAAGGG             >  SRR4302533.4408435/1‑94 (MQ=60)

                                                                                  GTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGG             <  SRR4302533.5574612/94‑1 (MQ=60)

                                                                                  GTTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGG             <  SRR4302533.4444084/94‑1 (MQ=60)

                                                                                   TTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGG            <  SRR4302533.163316/94‑1 (MQ=60)

                                                                                   TTTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGG            >  SRR4302533.2443398/1‑94 (MQ=60)

                                                                                    TTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGG           <  SRR4302533.2209144/94‑1 (MQ=60)

                                                                                    TTAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGG           >  SRR4302533.4080130/1‑94 (MQ=60)

                                                                                     TAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGA          >  SRR4302533.3431165/1‑94 (MQ=60)

                                                                                     TAATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGA          >  SRR4302533.3321432/1‑94 (MQ=60)

                                                                                      AATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACTCCCGAGGGAAAAGGGGGAT         <  SRR4302533.2258948/94‑1 (MQ=60)

                                                                                       ATAGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTAAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATG        <  SRR4302533.1040168/94‑1 (MQ=60)

                                                                                         AGCCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCA      >  SRR4302533.4238431/1‑94 (MQ=60)

                                                                                           CCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAAC    <  SRR4302533.140185/94‑1 (MQ=60)

                                                                                           CCGTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAAC    >  SRR4302533.5271134/1‑94 (MQ=60)

                                                                                             GTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGC  <  SRR4302533.3927792/94‑1 (MQ=60)

                                                                                             GTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGC  >  SRR4302533.1216210/1‑94 (MQ=60)

                                                                                             GTGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGACTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGC  >  SRR4302533.6107658/1‑94 (MQ=60)

GCTGCGGCAATCGCATTTTTAACGGCGGGTGAAATGGTGTGATCGGGCAGCAGAAGGGTGCCATCCATATCGATAGCAATGAGTTTAATAGCCATGAGTTCCCCAGGTAGATTGGTTCCTGACCCATGCTAACGCGATTCCGCTCAAAAATCAGTACAACACCCGAGGGAAAAGGGGGATGCAACGC  >  NC_000913/3874486‑3874672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`