Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,886,722 G→A G122S (GGC→AGC)  b3708 → tryptophanase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,886,7220GA100.0% 1037.6 / NA 275G122S (GGC→AGC) b3708tryptophanase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (141/134);  total (141/134)

Only 100 of 283 total aligned reads displayed.

GGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGT  >  NC_000913/3886632‑3886811
                                                                                          |                                                                                         
ggTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGc                                                                                         <  2:1068690/93‑1 (MQ=255)
  ttATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCt                                                                                       >  1:5294221/1‑93 (MQ=255)
  ttATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCt                                                                                       >  1:2578029/1‑93 (MQ=255)
  ttATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCt                                                                                       <  2:2545759/93‑1 (MQ=255)
  ttAGCAATACACCAGTCCTACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCt                                                                                       <  2:2809916/93‑1 (MQ=255)
   tATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTg                                                                                      <  1:658328/93‑1 (MQ=255)
     tCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGa                                                                                    >  2:5405979/1‑93 (MQ=255)
     tCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGa                                                                                    >  2:4815697/1‑93 (MQ=255)
     tCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGa                                                                                    >  1:5102895/1‑93 (MQ=255)
       aaTACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATc                                                                                  <  1:5853658/93‑1 (MQ=255)
          acacCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCgca                                                                               >  1:1880348/1‑93 (MQ=255)
          acacCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCgca                                                                               <  1:6231300/93‑1 (MQ=255)
          acacCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCgca                                                                               <  2:3538560/93‑1 (MQ=255)
          acacCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCgca                                                                               >  1:2765605/1‑93 (MQ=255)
           cacCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCgcag                                                                              >  2:3402992/1‑93 (MQ=255)
            acCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCgcagc                                                                             >  2:683626/1‑93 (MQ=255)
              cATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCaa                                                                           <  1:3550068/93‑1 (MQ=255)
               aTTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCaaa                                                                          >  1:1018206/1‑93 (MQ=255)
                ttCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCaaaa                                                                         >  1:2458808/1‑93 (MQ=255)
                  ccGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtg                                                                       <  2:2541704/93‑1 (MQ=255)
                  ccGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtg                                                                       <  2:2055209/93‑1 (MQ=255)
                  ccGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtg                                                                       >  1:4308201/1‑93 (MQ=255)
                   cGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtgg                                                                      <  2:1591248/93‑1 (MQ=255)
                    gACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggt                                                                     <  2:2443741/93‑1 (MQ=255)
                    gACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggt                                                                     >  1:3986191/1‑93 (MQ=255)
                    gACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggt                                                                     >  1:5942101/1‑93 (MQ=255)
                     aCTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggtg                                                                    <  2:944599/93‑1 (MQ=255)
                     aCTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggtg                                                                    <  2:5561638/93‑1 (MQ=255)
                      cTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggtgg                                                                   <  2:1551532/93‑1 (MQ=255)
                      cTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggtgg                                                                   <  1:5443481/93‑1 (MQ=255)
                      cTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggtgg                                                                   <  2:3878196/93‑1 (MQ=255)
                      cTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAAtggtgg                                                                   <  2:3252300/93‑1 (MQ=255)
                       tCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGc                                                                  <  1:6102438/93‑1 (MQ=255)
                        cACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCg                                                                 <  1:3134553/93‑1 (MQ=255)
                           cAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTtc                                                              >  1:1506850/1‑93 (MQ=255)
                           cAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTtc                                                              >  2:2269407/1‑93 (MQ=255)
                            aGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTtct                                                             <  2:5842896/93‑1 (MQ=255)
                             gggCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTtctc                                                            >  1:5612418/1‑93 (MQ=255)
                              ggCCGTGGCGCAGAGCAAATCTATATTCCGGTCCTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTctct                                                           >  1:1065649/1‑93 (MQ=255)
                               gCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTa                                                          >  2:2100189/1‑93 (MQ=255)
                               gCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTa                                                          <  2:5228003/93‑1 (MQ=255)
                                ccGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTaa                                                         >  2:796277/1‑93 (MQ=255)
                                ccGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTaa                                                         <  2:4701610/93‑1 (MQ=255)
                                  gTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACt                                                       >  2:5449772/1‑93 (MQ=255)
                                   tGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTa                                                      <  1:1927753/93‑1 (MQ=255)
                                    ggCGCAGAGCAAATCTATATTCCGGCACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAt                                                     >  1:3813755/1‑93 (MQ=255)
                                     gcgcAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAtt                                                    <  1:4354876/93‑1 (MQ=255)
                                     gcgcAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAtt                                                    <  1:5776172/93‑1 (MQ=255)
                                     gcgcAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAtt                                                    <  2:1630775/93‑1 (MQ=255)
                                       gcAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTc                                                  <  1:1778488/93‑1 (MQ=255)
                                       gcAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTc                                                  <  2:3136721/93‑1 (MQ=255)
                                       gcAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTc                                                  >  2:3940757/1‑93 (MQ=255)
                                         agagCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCtt                                                <  1:5907079/93‑1 (MQ=255)
                                         agagCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCtt                                                >  1:2236688/1‑93 (MQ=255)
                                          gagCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAGAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCttt                                               >  1:838074/1‑93 (MQ=255)
                                            gCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGa                                             >  2:5555849/1‑93 (MQ=255)
                                            gCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGa                                             <  1:248666/93‑1 (MQ=255)
                                            gCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGa                                             <  2:6015857/93‑1 (MQ=255)
                                             cAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGAt                                            >  1:4044077/1‑93 (MQ=255)
                                              aaaTCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATa                                           >  1:237586/1‑93 (MQ=255)
                                               aaTCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAc                                          >  2:3288263/1‑93 (MQ=255)
                                                aTCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAcc                                         >  2:2740171/1‑93 (MQ=255)
                                                aTCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAcc                                         <  2:4546065/93‑1 (MQ=255)
                                                  cTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCAc                                       <  1:2896421/93‑1 (MQ=255)
                                                      atTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAg                                   >  1:392078/1‑93 (MQ=255)
                                                       ttCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAgg                                  >  1:4433281/1‑93 (MQ=255)
                                                          cGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGcc                               >  2:4262541/1‑93 (MQ=255)
                                                           ggTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCa                              >  2:367082/1‑93 (MQ=255)
                                                           ggTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCa                              <  1:3748406/93‑1 (MQ=255)
                                                            gTACTGATTAAAAAACTCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCAt                             <  1:4990014/93‑1 (MQ=255)
                                                            gTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCAt                             >  2:1875310/1‑93 (MQ=255)
                                                            gTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCAt                             >  2:3800255/1‑93 (MQ=255)
                                                             tACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATa                            >  1:4715499/1‑93 (MQ=255)
                                                                tGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc                         <  1:4137733/93‑1 (MQ=255)
                                                                tGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc                         >  1:4294659/1‑93 (MQ=255)
                                                                tGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGcc                         >  1:203287/1‑93 (MQ=255)
                                                                  aTTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAg                       >  1:135517/1‑93 (MQ=255)
                                                                  aTTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAg                       <  1:4874860/93‑1 (MQ=255)
                                                                       aaaaCGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCaa                  <  2:5603046/93‑1 (MQ=255)
                                                                        aaaCGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAAc                 <  2:4031666/93‑1 (MQ=255)
                                                                        aaaCGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAAc                 >  1:3310235/1‑93 (MQ=255)
                                                                        aaaCGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAAc                 >  1:4626660/1‑93 (MQ=255)
                                                                         aaCGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACg                <  1:2345060/93‑1 (MQ=255)
                                                                          aCGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACgg               >  2:3923678/1‑93 (MQ=255)
                                                                           cgcgAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGc              <  1:5342364/93‑1 (MQ=255)
                                                                           cgcgAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGc              <  2:2599373/93‑1 (MQ=255)
                                                                           cgcgAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGc              <  1:3259485/93‑1 (MQ=255)
                                                                            gcgAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGCTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCt             <  2:5704903/93‑1 (MQ=255)
                                                                              gAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGt           >  1:4416685/1‑93 (MQ=255)
                                                                              gAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGt           >  2:6226367/1‑93 (MQ=255)
                                                                                gCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTAc         >  2:1988178/1‑93 (MQ=255)
                                                                                gCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTAc         <  2:4426145/93‑1 (MQ=255)
                                                                                gCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTAc         >  2:874560/1‑93 (MQ=255)
                                                                                  aGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCg       <  2:1753339/93‑1 (MQ=255)
                                                                                   ggAAAAAATCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGt      >  2:6152969/1‑93 (MQ=255)
                                                                                   ggAAAAAATCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGACTGTACCGt      <  2:2229457/93‑1 (MQ=255)
                                                                                   ggAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGt      <  2:1680436/93‑1 (MQ=255)
                                                                                   ggAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGt      >  1:4471968/1‑93 (MQ=255)
                                                                                    gAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTg     >  2:1367170/1‑93 (MQ=255)
                                                                                       aaaaGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGt  <  2:5095964/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGT  >  NC_000913/3886632‑3886811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAACG  >  NC_000913/3886630‑3886815
                                                                                            |                                                                                             
TTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAG                                                                                              >  SRR4302533.1407066/1‑94 (MQ=60)
  GGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCC                                                                                            >  SRR4302533.1798157/1‑94 (MQ=60)
   GTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCT                                                                                           <  SRR4302533.2301595/94‑1 (MQ=60)
   GTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCT                                                                                           >  SRR4302533.5325911/1‑94 (MQ=60)
   GTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCT                                                                                           >  SRR4302533.2593895/1‑94 (MQ=60)
   GTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCT                                                                                           <  SRR4302533.4352105/94‑1 (MQ=60)
   GTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCT                                                                                           <  SRR4302533.1891904/94‑1 (MQ=60)
    tcataaatacccctgcccccctcgcgggggcgggggcgaagaaaaaataTATATTCCGGTACTGATAAAAAAACGCGAGCAGGAAAAAAGCCTG                                                                                          <  SRR4302533.3624645/45‑1 (MQ=60)
    TTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTG                                                                                          <  SRR4302533.4274343/94‑1 (MQ=60)
     TATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGG                                                                                         <  SRR4302533.1484210/94‑1 (MQ=60)
     TATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGG                                                                                         <  SRR4302533.662209/94‑1 (MQ=60)
      ATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGA                                                                                        >  SRR4302533.4002480/1‑94 (MQ=60)
      ATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGA                                                                                        >  SRR4302533.5133722/1‑94 (MQ=60)
        CAATATACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATT                                                                                      >  SRR4302533.5762491/1‑94 (MQ=60)
        CAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATC                                                                                      >  SRR4302533.3620593/1‑94 (MQ=60)
        CAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATC                                                                                      <  SRR4302533.4329544/94‑1 (MQ=60)
         AATGCACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCG                                                                                     <  SRR4302533.4418272/94‑1 (MQ=60)
         AATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCG                                                                                     <  SRR4302533.5889047/94‑1 (MQ=60)
          ATACACCATTCCGACTCACCAGGGCCGTGGAGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGC                                                                                    >  SRR4302533.3969170/1‑94 (MQ=60)
           TACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCA                                                                                   >  SRR4302533.1341621/1‑94 (MQ=60)
           TACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCA                                                                                   <  SRR4302533.1039130/94‑1 (MQ=60)
           TACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCA                                                                                   >  SRR4302533.1891801/1‑94 (MQ=60)
           TACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCA                                                                                   >  SRR4302533.2782562/1‑94 (MQ=60)
           TACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCA                                                                                   <  SRR4302533.425940/94‑1 (MQ=60)
            ACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAG                                                                                  <  SRR4302533.6268618/94‑1 (MQ=60)
             CACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGC                                                                                 >  SRR4302533.509736/1‑94 (MQ=60)
             CACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGC                                                                                 >  SRR4302533.6080959/1‑94 (MQ=60)
             CACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGC                                                                                 >  SRR4302533.5862524/1‑94 (MQ=60)
                CATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCACA                                                                              >  SRR4302533.2492005/1‑94 (MQ=60)
                CATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAA                                                                              >  SRR4302533.1024191/1‑94 (MQ=60)
                CATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAA                                                                              <  SRR4302533.3571938/94‑1 (MQ=60)
                 ATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAA                                                                             >  SRR4302533.464121/1‑94 (MQ=60)
                 ATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAA                                                                             >  SRR4302533.2473980/1‑94 (MQ=60)
                   TCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATG                                                                           >  SRR4302533.4334130/1‑94 (MQ=60)
                   TCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATG                                                                           <  SRR4302533.4807797/94‑1 (MQ=60)
                    CCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGG                                                                          >  SRR4302533.5500783/1‑94 (MQ=60)
                     CGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGT                                                                         >  SRR4302533.4010469/1‑94 (MQ=60)
                     CGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGT                                                                         >  SRR4302533.4720565/1‑94 (MQ=60)
                     CGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGT                                                                         >  SRR4302533.5978037/1‑94 (MQ=60)
                     CGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGT                                                                         <  SRR4302533.4125128/94‑1 (MQ=60)
                      CACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTG                                                                        <  SRR4302533.1591131/94‑1 (MQ=60)
                       ACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGG                                                                       >  SRR4302533.4029803/1‑94 (MQ=60)
                        CTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGC                                                                      <  SRR4302533.5476279/94‑1 (MQ=60)
                        CTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGC                                                                      >  SRR4302533.4457511/1‑94 (MQ=60)
                        CTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGC                                                                      <  SRR4302533.2159533/94‑1 (MQ=60)
                         TCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCG                                                                     <  SRR4302533.6139279/94‑1 (MQ=60)
                          CACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGT                                                                    <  SRR4302533.3153827/94‑1 (MQ=60)
                           ACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTCAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTT                                                                   >  SRR4302533.3080246/1‑94 (MQ=60)
                            CCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTC                                                                  >  SRR4302533.5012058/1‑94 (MQ=60)
                            CCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTC                                                                  <  SRR4302533.4390492/94‑1 (MQ=60)
                            CCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTC                                                                  >  SRR4302533.1515933/1‑94 (MQ=60)
                            CCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTC                                                                  <  SRR4302533.6326724/94‑1 (MQ=60)
                             CAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCT                                                                 >  SRR4302533.3446006/1‑94 (MQ=60)
                              AGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTC                                                                >  SRR4302533.5646341/1‑94 (MQ=60)
                              AGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTC                                                                >  SRR4302533.913843/1‑94 (MQ=60)
                               GGGCCGTGGCGCAGAGCAAATCTATATTCCGGTCCTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCT                                                               >  SRR4302533.1071908/1‑94 (MQ=60)
                                 GCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAA                                                             <  SRR4302533.2800727/94‑1 (MQ=60)
                                 GCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAA                                                             <  SRR4302533.3128878/94‑1 (MQ=60)
                                  CCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGTTGGCGTTCTCTAAC                                                            <  SRR4302533.2518867/94‑1 (MQ=60)
                                   CGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAACAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACT                                                           >  SRR4302533.5936557/1‑94 (MQ=60)
                                     TGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAT                                                         <  SRR4302533.1939514/94‑1 (MQ=60)
                                     TGGCGCAGAGCAAATCTATATTCCGGCACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTAT                                                         >  SRR4302533.3837078/1‑94 (MQ=60)
                                       GCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTT                                                       <  SRR4302533.4381162/94‑1 (MQ=60)
                                       GCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTT                                                       <  SRR4302533.5811057/94‑1 (MQ=60)
                                         GCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCT                                                     <  SRR4302533.1789317/94‑1 (MQ=60)
                                         GCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCT                                                     >  SRR4302533.1987663/1‑94 (MQ=60)
                                          CAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTT                                                    >  SRR4302533.4329260/1‑94 (MQ=60)
                                          CAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTT                                                    >  SRR4302533.2250516/1‑94 (MQ=60)
                                           AGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAGAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTT                                                   >  SRR4302533.842983/1‑94 (MQ=60)
                                           AGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTT                                                   <  SRR4302533.5942750/94‑1 (MQ=60)
                                             AGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGA                                                 >  SRR4302533.194771/1‑94 (MQ=60)
                                             AGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGA                                                 >  SRR4302533.835244/1‑94 (MQ=60)
                                              GCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGAT                                                >  SRR4302533.4068691/1‑94 (MQ=60)
                                              GCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGAT                                                <  SRR4302533.250201/94‑1 (MQ=60)
                                              GCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGAT                                                <  SRR4302533.5223995/94‑1 (MQ=60)
                                              GCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGAT                                                <  SRR4302533.1525108/94‑1 (MQ=60)
                                              GCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGAT                                                >  SRR4302533.3925621/1‑94 (MQ=60)
                                               CAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATA                                               <  SRR4302533.5334328/94‑1 (MQ=60)
                                               CAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATA                                               <  SRR4302533.544531/94‑1 (MQ=60)
                                               CAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATA                                               >  SRR4302533.6228437/1‑94 (MQ=60)
                                               CAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATA                                               >  SRR4302533.239057/1‑94 (MQ=60)
                                               CAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATA                                               <  SRR4302533.358186/94‑1 (MQ=60)
                                                AAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATAC                                              <  SRR4302533.472062/94‑1 (MQ=60)
                                                  ATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCA                                            >  SRR4302533.4374643/1‑94 (MQ=60)
                                                    CTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACG                                          >  SRR4302533.5922039/1‑94 (MQ=60)
                                                    CTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACG                                          <  SRR4302533.3311942/94‑1 (MQ=60)
                                                    CTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACG                                          <  SRR4302533.2914230/94‑1 (MQ=60)
                                                     TATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGC                                         <  SRR4302533.409065/94‑1 (MQ=60)
                                                       TATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAG                                       >  SRR4302533.394454/1‑94 (MQ=60)
                                                       TATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAG                                       <  SRR4302533.1377305/94‑1 (MQ=60)
                                                        ATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGG                                      >  SRR4302533.573172/1‑94 (MQ=60)
                                                        ATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGG                                      >  SRR4302533.4460084/1‑94 (MQ=60)
                                                         TTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGG                                     <  SRR4302533.2633567/94‑1 (MQ=60)
                                                         TTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGG                                     <  SRR4302533.4976225/94‑1 (MQ=60)
                                                         TTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGG                                     <  SRR4302533.240166/94‑1 (MQ=60)
                                                         TTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGACCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGG                                     >  SRR4302533.4467085/1‑94 (MQ=60)
                                                           CCGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCC                                   <  SRR4302533.3218288/94‑1 (MQ=60)
                                                            CGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCA                                  >  SRR4302533.255924/1‑94 (MQ=60)
                                                            CGGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCA                                  <  SRR4302533.5945040/94‑1 (MQ=60)
                                                             GGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCAT                                 <  SRR4302533.3233471/94‑1 (MQ=60)
                                                             GGTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCAT                                 <  SRR4302533.3771385/94‑1 (MQ=60)
                                                              GTACTGATTAAAAAACTCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATA                                <  SRR4302533.5020267/94‑1 (MQ=60)
                                                              GTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATA                                >  SRR4302533.4744081/1‑94 (MQ=60)
                                                              GTACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATA                                >  SRR4302533.2373426/1‑94 (MQ=60)
                                                               TACTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAG                               <  SRR4302533.2695614/94‑1 (MQ=60)
                                                                 CTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCC                             >  SRR4302533.4320487/1‑94 (MQ=60)
                                                                 CTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCC                             >  SRR4302533.11003/1‑94 (MQ=60)
                                                                 CTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCC                             >  SRR4302533.5642060/1‑94 (MQ=60)
                                                                 CTGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCC                             >  SRR4302533.204579/1‑94 (MQ=60)
                                                                  TGATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCA                            <  SRR4302533.4162837/94‑1 (MQ=60)
                                                                   GATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAG                           >  SRR4302533.3792461/1‑94 (MQ=60)
                                                                   GATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAG                           >  SRR4302533.136375/1‑94 (MQ=60)
                                                                    ATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGA                          >  SRR4302533.4478313/1‑94 (MQ=60)
                                                                    ATTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGA                          <  SRR4302533.4904395/94‑1 (MQ=60)
                                                                     TTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGAT                         <  SRR4302533.3915032/94‑1 (MQ=60)
                                                                     TTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGAT                         <  SRR4302533.4757015/94‑1 (MQ=60)
                                                                     TTAAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGAT                         <  SRR4302533.648057/94‑1 (MQ=60)
                                                                       AAAAAACGCGAGCAGGAAAAACGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATCCCACGCAGGGCCATAGCCAGATCA                       <  SRR4302533.4525959/94‑1 (MQ=60)
                                                                       AAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCA                       <  SRR4302533.2454698/94‑1 (MQ=60)
                                                                       AAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCA                       <  SRR4302533.2292539/94‑1 (MQ=60)
                                                                       AAAAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCA                       <  SRR4302533.5952589/94‑1 (MQ=60)
                                                                         AAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAAC                     >  SRR4302533.3330673/1‑94 (MQ=60)
                                                                         AAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAAC                     <  SRR4302533.2844995/94‑1 (MQ=60)
                                                                         AAAACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAAC                     >  SRR4302533.4654700/1‑94 (MQ=60)
                                                                           AACGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGG                   <  SRR4302533.2359572/94‑1 (MQ=60)
                                                                             CGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCT                 <  SRR4302533.5374402/94‑1 (MQ=60)
                                                                             CGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCT                 >  SRR4302533.184434/1‑94 (MQ=60)
                                                                             CGCGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCT                 <  SRR4302533.3279591/94‑1 (MQ=60)
                                                                               CGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGT               >  SRR4302533.4443389/1‑94 (MQ=60)
                                                                               CGAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGT               >  SRR4302533.5407552/1‑94 (MQ=60)
                                                                                GAGCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTA              >  SRR4302533.2376888/1‑94 (MQ=60)
                                                                                  GCAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACC            <  SRR4302533.2051376/94‑1 (MQ=60)
                                                                                   CAGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCG           >  SRR4302533.6020786/1‑94 (MQ=60)
                                                                                    AGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGT          >  SRR4302533.4499017/1‑94 (MQ=60)
                                                                                    AGGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGT          >  SRR4302533.5233831/1‑94 (MQ=60)
                                                                                     GGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTG         <  SRR4302533.5372241/94‑1 (MQ=60)
                                                                                     GGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTG         >  SRR4302533.3374523/1‑94 (MQ=60)
                                                                                     GGAAAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTG         >  SRR4302533.6228873/1‑94 (MQ=60)
                                                                                        AAAAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGT      <  SRR4302533.3809287/94‑1 (MQ=60)
                                                                                          AAAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAA    <  SRR4302533.5656876/94‑1 (MQ=60)
                                                                                           AAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAAC   <  SRR4302533.2763319/94‑1 (MQ=60)
                                                                                           AAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAAC   <  SRR4302533.5293369/94‑1 (MQ=60)
                                                                                           AAGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAAC   >  SRR4302533.3195032/1‑94 (MQ=60)
                                                                                            AGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCGGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAACG  >  SRR4302533.3215961/1‑94 (MQ=60)
                                                                                            AGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAACG  >  SRR4302533.5374341/1‑94 (MQ=60)
                                                                                            AGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAACG  <  SRR4302533.5801752/94‑1 (MQ=60)
                                                                                            |                                                                                             
TTGGTTATCAATACACCATTCCGACTCACCAGGGCCGTGGCGCAGAGCAAATCTATATTCCGGTACTGATTAAAAAACGCGAGCAGGAAAAAGGCCTGGATCGCAGCAAAATGGTGGCGTTCTCTAACTATTTCTTTGATACCACGCAGGGCCATAGCCAGATCAACGGCTGTACCGTGCGTAACG  >  NC_000913/3886630‑3886815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑