Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,915,661	T→C	Y78C (TAC→TGC)	atpG ←	membrane‑bound ATP synthase, F1 sector, gamma‑subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,915,661	0	T	C	100.0%	788.1 / NA	247	Y78C (TAC→TGC)	atpG	membrane‑bound ATP synthase, F1 sector, gamma‑subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (129/118); total (129/118)

Only 100 of 249 total aligned reads displayed.

CGGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATG  >  NC_000913/3915572‑3915750

  gTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGccc                                                                                      >  1:5945665/1‑93 (MQ=255)

   tacAGGTCTTCATTTCCGCCAGCCGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCa                                                                                     >  2:4154473/3‑93 (MQ=255)

   tCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCa                                                                                     >  2:822058/1‑93 (MQ=255)

    ccAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCACGCAGCCCAc                                                                                    >  2:2635583/1‑93 (MQ=255)

     cAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCAcg                                                                                   >  1:828581/1‑93 (MQ=255)

      aGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCAcgc                                                                                  >  1:5357599/1‑93 (MQ=255)

      aGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCAcgc                                                                                  >  2:5870264/1‑93 (MQ=255)

        gTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGt                                                                                >  2:3943133/1‑93 (MQ=255)

        gTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGt                                                                                <  1:455989/93‑1 (MQ=255)

        gTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGt                                                                                >  2:2553990/1‑93 (MQ=255)

         tCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGtt                                                                               >  1:3794867/1‑93 (MQ=255)

         tCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGtt                                                                               <  1:2721914/93‑1 (MQ=255)

          cTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAACCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGttt                                                                              <  2:3143832/93‑1 (MQ=255)

           ttCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTa                                                                             >  2:5237048/1‑93 (MQ=255)

              aTTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACg                                                                          >  2:369021/1‑93 (MQ=255)

              aTTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACg                                                                          >  1:642435/1‑93 (MQ=255)

               tttCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGt                                                                         <  1:4263963/93‑1 (MQ=255)

               tttCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGt                                                                         >  1:2982091/1‑93 (MQ=255)

                 tCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTcg                                                                       >  1:647087/1‑93 (MQ=255)

                  ccGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTcgc                                                                      <  2:4290900/93‑1 (MQ=255)

                      cagcagTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTc                                                                  >  2:2493750/1‑93 (MQ=255)

                      cagcagTTTTGTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTc                                                                  <  2:2813261/93‑1 (MQ=255)

                       agcagTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCt                                                                 >  2:1903395/1‑93 (MQ=255)

                       agcagTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCt                                                                 >  1:28052/1‑93 (MQ=255)

                        gcagTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCtt                                                                >  2:1116919/1‑93 (MQ=255)

                        gcagTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCtt                                                                >  1:5452287/1‑93 (MQ=255)

                        gcagTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAAAGTAGCGGTCtt                                                                >  2:853393/1‑93 (MQ=255)

                          agTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTcc                                                              <  2:2416247/93‑1 (MQ=255)

                          agTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTcc                                                              <  2:1401363/93‑1 (MQ=255)

                           gTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCa                                                             >  2:5284672/1‑93 (MQ=255)

                           gTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCa                                                             >  1:2768529/1‑93 (MQ=255)

                           gTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCa                                                             <  2:2131224/93‑1 (MQ=255)

                           gTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCa                                                             >  1:5554180/1‑93 (MQ=255)

                            ttttttGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAg                                                            <  2:264754/93‑1 (MQ=255)

                             tttttGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAgg                                                           <  1:1085491/93‑1 (MQ=255)

                                ttGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTaa                                                        <  2:545670/93‑1 (MQ=255)

                                  gAACAGGTTAATGTTCAAACCACCGTACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAgg                                                      >  2:3985843/1‑93 (MQ=255)

                                  gAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAgg                                                      >  1:2703284/1‑93 (MQ=255)

                                   aaCAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAggg                                                     <  1:3290037/93‑1 (MQ=255)

                                    aCAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGt                                                    >  2:5799422/1‑93 (MQ=255)

                                    aCAGGTTAATGTACGAACCGCCGCACAACCCGCGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGt                                                    <  2:5645862/93‑1 (MQ=255)

                                     cAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTg                                                   >  2:1326488/1‑93 (MQ=255)

                                      aGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGc                                                  >  1:625833/1‑93 (MQ=255)

                                        gTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCtt                                                <  1:500727/93‑1 (MQ=255)

                                        gTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCtt                                                >  2:719983/1‑93 (MQ=255)

                                         ttAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTta                                               >  1:1619288/1‑93 (MQ=255)

                                         ttAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTta                                               >  1:6293972/1‑93 (MQ=255)

                                           aaTGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTtata                                             >  1:4679557/1‑93 (MQ=255)

                                            aTGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTTCTTCAGGTAAGAGTGCTTatat                                            >  1:2255821/1‑93 (MQ=255)

                                            aTGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTatat                                            <  2:5948883/93‑1 (MQ=255)

                                              gTTCAACCCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTc                                          <  1:4732126/93‑1 (MQ=255)

                                              gTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTc                                          <  2:632989/93‑1 (MQ=255)

                                              gTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTc                                          <  1:3736841/93‑1 (MQ=255)

                                               ttCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTcc                                         <  2:5107133/93‑1 (MQ=255)

                                                tCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAAGGTGCTTATATTCCa                                        >  2:2276361/1‑93 (MQ=255)

                                                 cAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCTTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAg                                       <  1:4437434/93‑1 (MQ=255)

                                                 cAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAg                                       <  1:4343948/93‑1 (MQ=255)

                                                 cAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAg                                       <  1:180563/93‑1 (MQ=255)

                                                      caccGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTAc                                  <  2:4868160/93‑1 (MQ=255)

                                                       cccGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTAcc                                 <  1:2129238/92‑1 (MQ=255)

                                                        ccGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCg                                <  1:3925256/93‑1 (MQ=255)

                                                         cGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCgt                               <  1:1378858/93‑1 (MQ=255)

                                                         cGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCgt                               <  1:3565718/93‑1 (MQ=255)

                                                         cGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCgt                               <  1:2487915/93‑1 (MQ=255)

                                                         cGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGGAAGGGGGCTTATATTCCAGATTACCgg                               >  2:4957431/1‑92 (MQ=255)

                                                          gCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCgtg                              <  2:5989554/93‑1 (MQ=255)

                                                          gCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCgtg                              >  1:3951971/1‑93 (MQ=255)

                                                           cacaAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCgtgt                             >  1:3412266/1‑93 (MQ=255)

                                                           cacaAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCgtgt                             <  1:6057549/93‑1 (MQ=255)

                                                             caAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGc                           <  1:1966161/93‑1 (MQ=255)

                                                             caAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGc                           >  1:5269290/1‑93 (MQ=255)

                                                              aaaCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCa                          <  1:3493691/93‑1 (MQ=255)

                                                              aaaCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCa                          >  1:3649070/1‑93 (MQ=255)

                                                              aaaCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCa                          <  1:717613/93‑1 (MQ=255)

                                                               aaCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCaa                         >  1:5581531/1‑93 (MQ=255)

                                                               aaCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCaa                         >  1:5819946/1‑93 (MQ=255)

                                                               aaCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCaa                         <  2:5423477/93‑1 (MQ=255)

                                                                aCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAg                        <  2:1993296/93‑1 (MQ=255)

                                                                   aCGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTg                     >  1:1219126/1‑93 (MQ=255)

                                                                   aCGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTg                     >  1:5319948/1‑93 (MQ=255)

                                                                    cggtcggtCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGa                    >  2:3562868/1‑93 (MQ=255)

                                                                     ggtcggtcGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGAc                   <  1:6126350/93‑1 (MQ=255)

                                                                      gtcggtcgACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGAcc                  >  1:3687336/1‑93 (MQ=255)

                                                                         ggtcgACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAAt               <  1:1700753/93‑1 (MQ=255)

                                                                         ggtcgACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAAt               >  2:5861368/1‑93 (MQ=255)

                                                                            cgACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCAc            <  2:4538116/93‑1 (MQ=255)

                                                                            cgACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGAAAGGTGACCAATCAc            <  2:3220491/93‑1 (MQ=255)

                                                                              acacCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACtt          <  2:3351227/93‑1 (MQ=255)

                                                                              acacCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACtt          <  1:4149938/93‑1 (MQ=255)

                                                                               caccacCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACttt         >  1:4955313/1‑93 (MQ=255)

                                                                                accaccAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTg        >  1:3132928/1‑93 (MQ=255)

                                                                                 ccaccaGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTgc       <  2:2999078/93‑1 (MQ=255)

                                                                                    ccaGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCa    <  1:2081329/93‑1 (MQ=255)

                                                                                     caGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAt   <  2:5272457/93‑1 (MQ=255)

                                                                                     caGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAt   <  2:1649340/93‑1 (MQ=255)

                                                                                     caGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAt   >  2:4775562/1‑93 (MQ=255)

                                                                                     caGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAt   <  2:3318555/93‑1 (MQ=255)

                                                                                     caGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAt   >  2:3194052/1‑93 (MQ=255)

                                                                                      aGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATg  <  2:1715089/93‑1 (MQ=255)

                                                                                      aGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATg  <  1:3066883/93‑1 (MQ=255)

CGGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATG  >  NC_000913/3915572‑3915750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGTCGGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTT  >  NC_000913/3915569‑3915754

TGTCGGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCA                                                                                              <  SRR4302533.2446945/94‑1 (MQ=60)

 GTCGGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAG                                                                                             <  SRR4302533.2118138/94‑1 (MQ=60)

  TCGGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGC                                                                                            >  SRR4302533.764702/1‑94 (MQ=60)

    GGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCC                                                                                          >  SRR4302533.5981621/1‑94 (MQ=60)

    GGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCC                                                                                          <  SRR4302533.5031487/94‑1 (MQ=60)

       CCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACG                                                                                       >  SRR4302533.3567508/1‑94 (MQ=60)

       CCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACG                                                                                       >  SRR4302533.827077/1‑94 (MQ=60)

       CCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACG                                                                                       >  SRR4302533.833440/1‑94 (MQ=60)

        CAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGC                                                                                      >  SRR4302533.5389759/1‑94 (MQ=60)

         AGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCG                                                                                     >  SRR4302533.5301729/1‑94 (MQ=60)

         AGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCG                                                                                     >  SRR4302533.332821/1‑94 (MQ=60)

           GTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTT                                                                                   <  SRR4302533.458715/94‑1 (MQ=60)

           GTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTT                                                                                   >  SRR4302533.3818090/1‑94 (MQ=60)

            TCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTT                                                                                  <  SRR4302533.2738618/94‑1 (MQ=60)

            TCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCACACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTT                                                                                  >  SRR4302533.2209273/1‑94 (MQ=60)

             CTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTA                                                                                 >  SRR4302533.4401916/1‑94 (MQ=60)

             CTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTA                                                                                 >  SRR4302533.4744942/1‑94 (MQ=60)

               TCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAAC                                                                               >  SRR4302533.5507774/1‑94 (MQ=60)

                CATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACG                                                                              >  SRR4302533.646212/1‑94 (MQ=60)

                 ATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGT                                                                             <  SRR4302533.3966451/94‑1 (MQ=60)

                 ATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGT                                                                             >  SRR4302533.3000333/1‑94 (MQ=60)

                  TTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTC                                                                            <  SRR4302533.4289648/94‑1 (MQ=60)

                  GTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTC                                                                            <  SRR4302533.6086590/94‑1 (MQ=60)

                   TTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCG                                                                           <  SRR4302533.3009916/94‑1 (MQ=60)

                   TTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCG                                                                           >  SRR4302533.650900/1‑94 (MQ=60)

                    TCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGC                                                                          <  SRR4302533.2534639/94‑1 (MQ=60)

                     CCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCG                                                                         <  SRR4302533.2513159/94‑1 (MQ=60)

                     CCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCG                                                                         >  SRR4302533.4784744/1‑94 (MQ=60)

                       GCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGT                                                                       <  SRR4302533.4671120/94‑1 (MQ=60)

                        CCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTC                                                                      >  SRR4302533.57564/1‑94 (MQ=60)

                        CCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTC                                                                      <  SRR4302533.662056/94‑1 (MQ=60)

                         CAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCT                                                                     >  SRR4302533.2825926/1‑94 (MQ=60)

                         CAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCT                                                                     >  SRR4302533.28240/1‑94 (MQ=60)

                          AGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTT                                                                    <  SRR4302533.1596424/94‑1 (MQ=60)

                          AGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTT                                                                    >  SRR4302533.5876106/1‑94 (MQ=60)

                          AGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTT                                                                    >  SRR4302533.5485129/1‑94 (MQ=60)

                          AGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTT                                                                    >  SRR4302533.3773741/1‑94 (MQ=60)

                           GCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTC                                                                   <  SRR4302533.4113794/94‑1 (MQ=60)

                            CAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCC                                                                  <  SRR4302533.3756551/94‑1 (MQ=60)

                            CAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCC                                                                  <  SRR4302533.5257891/94‑1 (MQ=60)

                            CAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACAACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCC                                                                  >  SRR4302533.3512976/1‑94 (MQ=60)

                            CAGTTTTTTGAACAGGTTAATGCTAAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCC                                                                  <  SRR4302533.3334692/94‑1 (MQ=60)

                             AGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCA                                                                 >  SRR4302533.5587721/1‑94 (MQ=60)

                             AGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCA                                                                 >  SRR4302533.2785514/1‑94 (MQ=60)

                               TTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGG                                                               <  SRR4302533.3620050/94‑1 (MQ=60)

                               TTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGG                                                               <  SRR4302533.2059931/94‑1 (MQ=60)

                                TTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGT                                                              <  SRR4302533.1091891/94‑1 (MQ=60)

                                   TTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAG                                                           <  SRR4302533.6167553/94‑1 (MQ=60)

                                   TTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAG                                                           <  SRR4302533.1231765/94‑1 (MQ=60)

                                    TGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGG                                                          >  SRR4302533.2719864/1‑94 (MQ=60)

                                     GAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGG                                                         <  SRR4302533.633734/94‑1 (MQ=60)

                                      AACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGT                                                        <  SRR4302533.3310349/94‑1 (MQ=60)

                                        CAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGC                                                      >  SRR4302533.629508/1‑94 (MQ=60)

                                         AGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCT                                                     >  SRR4302533.1598860/1‑94 (MQ=60)

                                         AGCTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCT                                                     <  SRR4302533.3087376/94‑1 (MQ=60)

                                          GGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTT                                                    >  SRR4302533.3679072/1‑94 (MQ=60)

                                          GGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTT                                                    <  SRR4302533.2796893/94‑1 (MQ=60)

                                          GGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTT                                                    <  SRR4302533.514261/94‑1 (MQ=60)

                                          AGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTT                                                    <  SRR4302533.4279862/94‑1 (MQ=60)

                                           GTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTA                                                   <  SRR4302533.503707/94‑1 (MQ=60)

                                           GTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTA                                                   >  SRR4302533.1629097/1‑94 (MQ=60)

                                           GTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTA                                                   >  SRR4302533.6331493/1‑94 (MQ=60)

                                           GTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTA                                                   <  SRR4302533.395481/94‑1 (MQ=60)

                                            TTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTAT                                                  >  SRR4302533.945063/1‑94 (MQ=60)

                                            TTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTAT                                                  >  SRR4302533.4639592/1‑94 (MQ=60)

                                             TAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATA                                                 >  SRR4302533.3515952/1‑94 (MQ=60)

                                             TAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATA                                                 <  SRR4302533.1698588/94‑1 (MQ=60)

                                             TAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATA                                                 >  SRR4302533.4707918/1‑94 (MQ=60)

                                             TAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATA                                                 >  SRR4302533.4555281/1‑94 (MQ=60)

                                              AATGTTCAAACCACCGCACAAACCGCGGTCGGTCGACGCCACCAGACAGCTCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATAT                                                <  SRR4302533.259738/94‑1 (MQ=60)

                                              AATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTTCTTCAGGTAAGAGTGCTTATAT                                                >  SRR4302533.2269777/1‑94 (MQ=60)

                                              AATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATAT                                                >  SRR4302533.2746805/1‑94 (MQ=60)

                                               ATGTTCAAACCACCGCACAAACCACGGTCGGTCGACCCCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATT                                               <  SRR4302533.558876/94‑1 (MQ=60)

                                               ATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATT                                               >  SRR4302533.5423059/1‑94 (MQ=60)

                                                TGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTC                                              >  SRR4302533.3921325/1‑94 (MQ=60)

                                                TGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTC                                              >  SRR4302533.5711166/1‑94 (MQ=60)

                                                 GTTCAACCCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCC                                             <  SRR4302533.4760814/94‑1 (MQ=60)

                                                 GTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCC                                             <  SRR4302533.3759764/94‑1 (MQ=60)

                                                 GTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCC                                             >  SRR4302533.2496807/1‑94 (MQ=60)

                                                 GTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCC                                             >  SRR4302533.6270049/1‑94 (MQ=60)

                                                  TTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCA                                            >  SRR4302533.5599729/1‑94 (MQ=60)

                                                  TTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCA                                            <  SRR4302533.2729922/94‑1 (MQ=60)

                                                   TCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAG                                           <  SRR4302533.3776119/94‑1 (MQ=60)

                                                    CAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCTTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGA                                          <  SRR4302533.4464257/94‑1 (MQ=60)

                                                    CAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGA                                          <  SRR4302533.4370126/94‑1 (MQ=60)

                                                    CAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGA                                          <  SRR4302533.181688/94‑1 (MQ=60)

                                                      AACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATT                                        >  SRR4302533.6055831/1‑94 (MQ=60)

                                                       ACCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTA                                       <  SRR4302533.6302196/94‑1 (MQ=60)

                                                        CCACCGCACAAGCCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTAC                                      <  SRR4302533.176434/94‑1 (MQ=60)

                                                        CCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTAC                                      <  SRR4302533.1716145/94‑1 (MQ=60)

                                                        CCACCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTAC                                      >  SRR4302533.6101626/1‑94 (MQ=60)

                                                          CCCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCG                                    <  SRR4302533.2142369/94‑1 (MQ=60)

                                                           CCGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGT                                   <  SRR4302533.3949224/94‑1 (MQ=60)

                                                            CGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTG                                  <  SRR4302533.1164986/94‑1 (MQ=60)

                                                            CGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTG                                  <  SRR4302533.2503238/94‑1 (MQ=60)

                                                            CGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTG                                  <  SRR4302533.3587695/94‑1 (MQ=60)

                                                            CGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTG                                  >  SRR4302533.3976061/1‑94 (MQ=60)

                                                            CGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTG                                  <  SRR4302533.1387153/94‑1 (MQ=60)

                                                            CGCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTG                                  >  SRR4302533.4327157/1‑94 (MQ=60)

                                                             GCACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGT                                 >  SRR4302533.3433341/1‑94 (MQ=60)

                                                              CACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTG                                <  SRR4302533.6094225/94‑1 (MQ=60)

                                                              CACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTG                                >  SRR4302533.554283/1‑94 (MQ=60)

                                                               ACAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGC                               >  SRR4302533.5300896/1‑94 (MQ=60)

                                                                CAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCA                              <  SRR4302533.1978176/94‑1 (MQ=60)

                                                                CAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCA                              >  SRR4302533.3671508/1‑94 (MQ=60)

                                                                CAAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCA                              <  SRR4302533.4458196/94‑1 (MQ=60)

                                                                 AAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAA                             >  SRR4302533.2874606/1‑94 (MQ=60)

                                                                 AAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAA                             <  SRR4302533.721848/94‑1 (MQ=60)

                                                                 AAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAA                             >  SRR4302533.5855103/1‑94 (MQ=60)

                                                                 AAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAA                             <  SRR4302533.3515243/94‑1 (MQ=60)

                                                                 AAACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAA                             >  SRR4302533.5615258/1‑94 (MQ=60)

                                                                  AACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAG                            <  SRR4302533.650778/94‑1 (MQ=60)

                                                                  AACCACGGTCGGTCGACACCACCAGACAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAG                            <  SRR4302533.3228112/94‑1 (MQ=60)

                                                                   ACCACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGG                           >  SRR4302533.2124531/1‑94 (MQ=60)

                                                                     CACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTG                         >  SRR4302533.1226445/1‑94 (MQ=60)

                                                                     CACGGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTG                         >  SRR4302533.5351832/1‑94 (MQ=60)

                                                                        GGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACC                      >  SRR4302533.3709997/1‑94 (MQ=60)

                                                                        GGTCGGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACC                      <  SRR4302533.6163274/94‑1 (MQ=60)

                                                                           CGGTCGACACCGCCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAAT                   <  SRR4302533.4204120/94‑1 (MQ=60)

                                                                            GGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATC                  >  SRR4302533.3686268/1‑94 (MQ=60)

                                                                            GGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATC                  >  SRR4302533.3148880/1‑94 (MQ=60)

                                                                            GGTCGACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATC                  <  SRR4302533.1711061/94‑1 (MQ=60)

                                                                                GACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTT              <  SRR4302533.2079381/94‑1 (MQ=60)

                                                                                 ACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTT             >  SRR4302533.4985329/1‑94 (MQ=60)

                                                                                 ACACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTT             <  SRR4302533.4175079/94‑1 (MQ=60)

                                                                                  CACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTG            >  SRR4302533.3152189/1‑94 (MQ=60)

                                                                                   ACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGC           >  SRR4302533.6342374/1‑94 (MQ=60)

                                                                                   ACCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGC           >  SRR4302533.5374953/1‑94 (MQ=60)

                                                                                    CCACCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCG          <  SRR4302533.2268195/94‑1 (MQ=60)

                                                                                       CCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAT       <  SRR4302533.2094137/94‑1 (MQ=60)

                                                                                       CCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAT       <  SRR4302533.2757056/94‑1 (MQ=60)

                                                                                       CCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAT       <  SRR4302533.1880460/94‑1 (MQ=60)

                                                                                       CCAGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCAT       >  SRR4302533.4947065/1‑94 (MQ=60)

                                                                                         AGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGG     <  SRR4302533.3085721/94‑1 (MQ=60)

                                                                                         AGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGG     <  SRR4302533.538377/94‑1 (MQ=60)

                                                                                         AGGCAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGGGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGG     >  SRR4302533.2346536/1‑94 (MQ=60)

                                                                                            CAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTCTATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTT  >  SRR4302533.2173575/1‑94 (MQ=60)

                                                                                            CAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTT  <  SRR4302533.5229486/94‑1 (MQ=60)

TGTCGGTCCAGGTCTTCATTTCCGCCAGCAGTTTTTTGAACAGGTTAATGTTCAAACCACCGCACAAACCACGGTCGGTCGACACCACCAGGTAGCCCACGCGTTTAACGTCGCGGTCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTT  >  NC_000913/3915569‑3915754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`