Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,923,857	T→C	Q76R (CAG→CGG)	mioC ←	MioC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,923,857	0	T	C	100.0%	864.4 / NA	265	Q76R (CAG→CGG)	mioC	MioC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/134); total (131/134)

Only 100 of 269 total aligned reads displayed.

TCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAG  >  NC_000913/3923767‑3923946

tCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGt                                                                                         >  1:5290215/1‑93 (MQ=255)

tCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGt                                                                                         >  2:5613506/1‑93 (MQ=255)

 cGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGtt                                                                                        >  2:513223/1‑93 (MQ=255)

   aGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTcc                                                                                      <  1:3351536/93‑1 (MQ=255)

    gTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCt                                                                                     <  1:5858028/93‑1 (MQ=255)

       tATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCa                                                                                  <  2:3071709/93‑1 (MQ=255)

        aTCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCaa                                                                                 <  2:4585854/93‑1 (MQ=255)

         tCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAAt                                                                                <  1:6343/93‑1 (MQ=255)

         tCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAAt                                                                                >  1:1606973/1‑93 (MQ=255)

          cGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATg                                                                               <  1:5027993/93‑1 (MQ=255)

          cGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATg                                                                               <  2:2896419/93‑1 (MQ=255)

            aTAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCt                                                                             >  2:583314/1‑93 (MQ=255)

             tAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCtt                                                                            >  1:5131388/1‑93 (MQ=255)

               gCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCa                                                                          >  1:1244609/1‑93 (MQ=255)

               gCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCa                                                                          >  1:5089178/1‑93 (MQ=255)

               gCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCa                                                                          >  1:243620/1‑93 (MQ=255)

                ccccACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCAt                                                                         <  1:1592512/93‑1 (MQ=255)

                   cacaAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATaga                                                                      >  2:1344500/1‑93 (MQ=255)

                     caAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaa                                                                    >  2:1813232/1‑93 (MQ=255)

                      aaaaGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaag                                                                   >  1:5103526/1‑93 (MQ=255)

                       aaaGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaagg                                                                  <  1:5453131/93‑1 (MQ=255)

                        aaGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaagga                                                                 <  1:4156747/93‑1 (MQ=255)

                         aGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggag                                                                >  2:5389486/1‑93 (MQ=255)

                         aGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggag                                                                <  2:4686185/93‑1 (MQ=255)

                           gtgtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaa                                                              <  2:2023863/93‑1 (MQ=255)

                            tgtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaa                                                             >  2:6295912/1‑93 (MQ=255)

                            tgtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaa                                                             >  2:449649/1‑93 (MQ=255)

                            tgtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaa                                                             >  1:4322717/1‑93 (MQ=255)

                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            <  2:4247836/93‑1 (MQ=255)

                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            <  2:5961010/93‑1 (MQ=255)

                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            >  1:4389754/1‑93 (MQ=255)

                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            <  1:1401353/93‑1 (MQ=255)

                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            <  2:5588635/93‑1 (MQ=255)

                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            <  1:3761079/93‑1 (MQ=255)

                             gtCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATagaaaggagaaag                                                            >  2:3299877/1‑93 (MQ=255)

                               tatatTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGt                                                          <  1:2266154/92‑1 (MQ=255)

                               cATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGt                                                          >  1:476593/1‑93 (MQ=255)

                                atatTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGtt                                                         <  2:2471719/93‑1 (MQ=255)

                                atatTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGtt                                                         >  1:2844834/1‑93 (MQ=255)

                                 tatTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTg                                                        >  2:4655542/1‑93 (MQ=255)

                                 tatTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTg                                                        >  2:402015/1‑93 (MQ=255)

                                  atTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGt                                                       <  1:2561334/93‑1 (MQ=255)

                                  atTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGt                                                       <  1:3645659/93‑1 (MQ=255)

                                  atTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGt                                                       <  2:12322/93‑1 (MQ=255)

                                   ttCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTc                                                      >  1:1988472/1‑93 (MQ=255)

                                     cACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCg                                                    <  2:1713258/93‑1 (MQ=255)

                                     cACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCg                                                    <  1:3098853/93‑1 (MQ=255)

                                        gACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGaa                                                 <  2:1744048/93‑1 (MQ=255)

                                        gACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGaa                                                 >  1:5742097/1‑93 (MQ=255)

                                         aCTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAat                                                >  2:824062/1‑93 (MQ=255)

                                          cTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGTAGAAAGGTTGTCCGGAata                                               <  1:1515363/93‑1 (MQ=255)

                                           tGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAatat                                              >  1:5273710/1‑93 (MQ=255)

                                            gCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAtc                                             >  1:3039487/1‑93 (MQ=255)

                                             ccAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAtct                                            <  2:860226/93‑1 (MQ=255)

                                             ccAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAtct                                            <  1:4649199/93‑1 (MQ=255)

                                              cAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAtctc                                           >  1:6080532/1‑93 (MQ=255)

                                              cAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAtctc                                           <  1:5703035/93‑1 (MQ=255)

                                               aaTACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTcc                                          <  1:3680388/93‑1 (MQ=255)

                                                aTACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCg                                         >  2:5222357/1‑93 (MQ=255)

                                                    cGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCAc                                     <  1:6251412/93‑1 (MQ=255)

                                                     gATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCAcc                                    >  2:3556540/1‑93 (MQ=255)

                                                     gATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCAcc                                    >  2:2055001/1‑93 (MQ=255)

                                                      aTTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCg                                   >  1:4064297/1‑93 (MQ=255)

                                                      aTTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCg                                   >  1:3454144/1‑93 (MQ=255)

                                                      aTTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCg                                   >  1:5941328/1‑93 (MQ=255)

                                                       ttGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgt                                  >  1:6035371/1‑93 (MQ=255)

                                                       ttGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgg                                  >  2:3842234/1‑92 (MQ=255)

                                                         gcgcCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgg                                <  2:3172241/93‑1 (MQ=255)

                                                         gcgcCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgcgg                                >  1:4016969/1‑93 (MQ=255)

                                                           gcCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgggt                              <  1:5523978/93‑1 (MQ=255)

                                                             cAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgggtgg                            <  1:1025798/93‑1 (MQ=255)

                                                             cAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCgtgggtgg                            >  2:6278842/1‑93 (MQ=255)

                                                              aaaGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGa                           <  1:2115558/93‑1 (MQ=255)

                                                              aaaGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGa                           >  2:1324686/1‑93 (MQ=255)

                                                              aaaGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGa                           >  2:3244811/1‑93 (MQ=255)

                                                               aaGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGGTTCATAGAAAGGAGAAAGGCTGTCCGGAATATCTCCGGCACAGTGGGTGGac                          >  1:4258425/1‑92 (MQ=255)

                                                                   ggACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGa                      >  1:3590264/1‑93 (MQ=255)

                                                                    gACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGAt                     >  2:1598317/1‑93 (MQ=255)

                                                                    gACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGAt                     <  2:2927166/93‑1 (MQ=255)

                                                                    gACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGAt                     >  2:1867208/1‑93 (MQ=255)

                                                                    gACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGAt                     <  1:4585107/93‑1 (MQ=255)

                                                                     aCTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATa                    >  1:929331/1‑93 (MQ=255)

                                                                       tGCAGAAAGATCGGGCTTCCGTTCCTGCAATGTTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAc                  <  2:4946521/93‑1 (MQ=255)

                                                                        gCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAcc                 <  2:1043733/93‑1 (MQ=255)

                                                                         cAGAAAGAGCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAcca                >  2:6152714/1‑93 (MQ=255)

                                                                          aGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccag               >  1:762988/1‑93 (MQ=255)

                                                                          aGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccag               >  1:2694521/1‑93 (MQ=255)

                                                                          aGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccag               >  1:135567/1‑93 (MQ=255)

                                                                           gAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagc              >  2:209301/1‑93 (MQ=255)

                                                                             aaGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAAccagcca            <  1:186187/93‑1 (MQ=255)

                                                                               gATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGa          <  2:2613995/93‑1 (MQ=255)

                                                                                 tCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATc        >  2:3734951/1‑93 (MQ=255)

                                                                                   gggCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCCCCGTGGGTGGAGCTGATAACCAGCCAGATccc      <  2:5397924/93‑1 (MQ=255)

                                                                                   gggCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATccc      >  2:3197641/1‑93 (MQ=255)

                                                                                   gggCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATccc      >  2:5593909/1‑93 (MQ=255)

                                                                                   gggCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATccc      >  1:3956628/1‑93 (MQ=255)

                                                                                      cTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGa   <  2:391770/93‑1 (MQ=255)

                                                                                      cTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGa   <  1:1154405/93‑1 (MQ=255)

                                                                                       ttCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAg  <  2:2782512/93‑1 (MQ=255)

                                                                                       ttCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAg  >  2:5657513/1‑93 (MQ=255)

TCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAG  >  NC_000913/3923767‑3923946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAG  >  NC_000913/3923764‑3923950

GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCC                                                                                               <  SRR4302533.1843560/94‑1 (MQ=60)

GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCACAAAGATCGGGCTTCC                                                                                               >  SRR4302533.5477455/1‑94 (MQ=60)

 CCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCG                                                                                              <  SRR4302533.3017965/94‑1 (MQ=60)

 CCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCG                                                                                              <  SRR4302533.165112/94‑1 (MQ=60)

 CCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCG                                                                                              >  SRR4302533.3874220/1‑94 (MQ=60)

  CTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGT                                                                                             >  SRR4302533.5321893/1‑94 (MQ=60)

  CTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGCGCTTCCGT                                                                                             >  SRR4302533.3673284/1‑94 (MQ=60)

    CGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTC                                                                                           >  SRR4302533.1399343/1‑94 (MQ=60)

    CGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTC                                                                                           >  SRR4302533.634608/1‑94 (MQ=60)

     GAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCC                                                                                          <  SRR4302533.3449506/94‑1 (MQ=60)

      AGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCT                                                                                         <  SRR4302533.3372239/94‑1 (MQ=60)

       GTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTG                                                                                        <  SRR4302533.5893441/94‑1 (MQ=60)

        TTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGC                                                                                       <  SRR4302533.5096587/94‑1 (MQ=60)

           ATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAAT                                                                                    >  SRR4302533.6284970/1‑94 (MQ=60)

           ATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAAT                                                                                    <  SRR4302533.1921922/94‑1 (MQ=60)

           ATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAAT                                                                                    >  SRR4302533.1616725/1‑94 (MQ=60)

            TCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATG                                                                                   <  SRR4302533.1194656/94‑1 (MQ=60)

            TCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATG                                                                                   <  SRR4302533.6400/94‑1 (MQ=60)

             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGT                                                                                  >  SRR4302533.1034660/1‑94 (MQ=60)

             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGC                                                                                  <  SRR4302533.5071136/94‑1 (MQ=60)

             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGC                                                                                  <  SRR4302533.2445174/94‑1 (MQ=60)

             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGC                                                                                  >  SRR4302533.5412731/1‑94 (MQ=60)

             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGC                                                                                  <  SRR4302533.5058440/94‑1 (MQ=60)

             CGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGC                                                                                  <  SRR4302533.2211497/94‑1 (MQ=60)

               ATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTT                                                                                <  SRR4302533.5506668/94‑1 (MQ=60)

               ATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTT                                                                                >  SRR4302533.5162384/1‑94 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              >  SRR4302533.4193518/1‑94 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              >  SRR4302533.245131/1‑94 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              <  SRR4302533.3771111/94‑1 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              >  SRR4302533.2613495/1‑94 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              <  SRR4302533.6218882/94‑1 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              <  SRR4302533.4322911/94‑1 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              <  SRR4302533.3175706/94‑1 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              >  SRR4302533.5119926/1‑94 (MQ=60)

                 AGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCA                                                                              >  SRR4302533.1252041/1‑94 (MQ=60)

                  GCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGAGTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCAT                                                                             <  SRR4302533.5146902/94‑1 (MQ=60)

                  GCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCAT                                                                             <  SRR4302533.5306558/94‑1 (MQ=60)

                   CCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATA                                                                            <  SRR4302533.1602146/94‑1 (MQ=60)

                   CCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATA                                                                            >  SRR4302533.5916499/1‑94 (MQ=60)

                    CCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAG                                                                           <  SRR4302533.4327494/94‑1 (MQ=60)

                    CCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAG                                                                           >  SRR4302533.1260827/1‑94 (MQ=60)

                     CCACAAAAGGCGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGA                                                                          >  SRR4302533.2220635/1‑94 (MQ=60)

                       ACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAA                                                                        >  SRR4302533.2335562/1‑94 (MQ=60)

                        CAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAG                                                                       >  SRR4302533.5134355/1‑94 (MQ=60)

                        CAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAG                                                                       >  SRR4302533.686805/1‑94 (MQ=60)

                         AAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGG                                                                      <  SRR4302533.4106990/94‑1 (MQ=60)

                          AAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGA                                                                     <  SRR4302533.5485977/94‑1 (MQ=60)

                          AAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGA                                                                     <  SRR4302533.1607703/94‑1 (MQ=60)

                           AAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAG                                                                    <  SRR4302533.4181934/94‑1 (MQ=60)

                              GTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAA                                                                 >  SRR4302533.4348748/1‑94 (MQ=60)

                              GTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAA                                                                 <  SRR4302533.2809278/94‑1 (MQ=60)

                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                                >  SRR4302533.4416258/1‑94 (MQ=60)

                               TGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAG                                                                <  SRR4302533.5294862/94‑1 (MQ=60)

                                GTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGG                                                               <  SRR4302533.1409803/94‑1 (MQ=60)

                                GTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGG                                                               <  SRR4302533.3784132/94‑1 (MQ=60)

                                 TCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGT                                                              <  SRR4302533.307354/94‑1 (MQ=60)

                                 TCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGT                                                              >  SRR4302533.479437/1‑94 (MQ=60)

                                  TATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTT                                                             <  SRR4302533.2280173/94‑1 (MQ=60)

                                  CATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTT                                                             >  SRR4302533.2862340/1‑94 (MQ=60)

                                  CATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTT                                                             <  SRR4302533.3631128/94‑1 (MQ=60)

                                   ATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTG                                                            >  SRR4302533.5552661/1‑94 (MQ=60)

                                    TATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGT                                                           <  SRR4302533.3847825/94‑1 (MQ=60)

                                     ATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTC                                                          >  SRR4302533.2000638/1‑94 (MQ=60)

                                     ATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTC                                                          <  SRR4302533.3668072/94‑1 (MQ=60)

                                     ATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTC                                                          <  SRR4302533.2577106/94‑1 (MQ=60)

                                       TCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCG                                                        <  SRR4302533.1533745/94‑1 (MQ=60)

                                        CACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGG                                                       <  SRR4302533.1848878/94‑1 (MQ=60)

                                        CACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGG                                                       >  SRR4302533.4726379/1‑94 (MQ=60)

                                        CACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGG                                                       <  SRR4302533.3117904/94‑1 (MQ=60)

                                         ACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGA                                                      <  SRR4302533.2926253/94‑1 (MQ=60)

                                          CGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAA                                                     >  SRR4302533.890300/1‑94 (MQ=60)

                                          CGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAA                                                     >  SRR4302533.5776747/1‑94 (MQ=60)

                                          CGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAA                                                     >  SRR4302533.4085864/1‑94 (MQ=60)

                                           GACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAAT                                                    <  SRR4302533.5837558/94‑1 (MQ=60)

                                            ACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATA                                                   >  SRR4302533.1802511/1‑94 (MQ=60)

                                            ACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATA                                                   <  SRR4302533.2044068/94‑1 (MQ=60)

                                            ACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATA                                                   <  SRR4302533.3484940/94‑1 (MQ=60)

                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGTAGAAAGGTTGTCCGGAATAT                                                  <  SRR4302533.1524490/94‑1 (MQ=60)

                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAT                                                  >  SRR4302533.5305330/1‑94 (MQ=60)

                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAT                                                  <  SRR4302533.4944371/94‑1 (MQ=60)

                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAT                                                  >  SRR4302533.4163213/1‑94 (MQ=60)

                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAT                                                  <  SRR4302533.6068297/94‑1 (MQ=60)

                                             CTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATAT                                                  >  SRR4302533.5472810/1‑94 (MQ=60)

                                              TGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATC                                                 >  SRR4302533.3058088/1‑94 (MQ=60)

                                               GCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCT                                                >  SRR4302533.3794191/1‑94 (MQ=60)

                                                CCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTC                                               >  SRR4302533.6117304/1‑94 (MQ=60)

                                                CCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTC                                               <  SRR4302533.1412689/94‑1 (MQ=60)

                                                CCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTC                                               <  SRR4302533.4677368/94‑1 (MQ=60)

                                                 CAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCC                                              <  SRR4302533.5737482/94‑1 (MQ=60)

                                                  AATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCG                                             <  SRR4302533.3703004/94‑1 (MQ=60)

                                                  AATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCG                                             >  SRR4302533.3647821/1‑94 (MQ=60)

                                                   ATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGG                                            <  SRR4302533.5138021/94‑1 (MQ=60)

                                                      CCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAACGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCAC                                         <  SRR4302533.3406995/94‑1 (MQ=60)

                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                        >  SRR4302533.3984617/1‑94 (MQ=60)

                                                       CGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACC                                        <  SRR4302533.6288808/94‑1 (MQ=60)

                                                        GATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGatacagcagatcggaagagcg                                       >  SRR4302533.4264914/1‑73 (MQ=60)

                                                        GATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCG                                       >  SRR4302533.1248486/1‑94 (MQ=60)

                                                        GATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCG                                       >  SRR4302533.3475465/1‑94 (MQ=60)

                                                        GATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCG                                       >  SRR4302533.5977257/1‑94 (MQ=60)

                                                        GATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCG                                       >  SRR4302533.4089034/1‑94 (MQ=60)

                                                         ATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGT                                      >  SRR4302533.1285681/1‑94 (MQ=60)

                                                         ATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGT                                      >  SRR4302533.6071946/1‑94 (MQ=60)

                                                           TGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGG                                    <  SRR4302533.6075418/94‑1 (MQ=60)

                                                           TGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGCGG                                    >  SRR4302533.4041428/1‑94 (MQ=60)

                                                             CGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGT                                  <  SRR4302533.915342/94‑1 (MQ=60)

                                                             CGCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGT                                  <  SRR4302533.154082/94‑1 (MQ=60)

                                                              GCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTG                                 <  SRR4302533.5557328/94‑1 (MQ=60)

                                                              GCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTG                                 <  SRR4302533.6078943/94‑1 (MQ=60)

                                                              GCCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTG                                 >  SRR4302533.5748015/1‑94 (MQ=60)

                                                               CCAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGG                                <  SRR4302533.5130829/94‑1 (MQ=60)

                                                                CAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGA                               >  SRR4302533.1467241/1‑94 (MQ=60)

                                                                CAAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGA                               <  SRR4302533.1031825/94‑1 (MQ=60)

                                                                 AAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGGTTCATAGAAAGGAGAAAGGCTGTCCGGAATATCTCCGGCACAGTGGGTGGAC                              >  SRR4302533.4284093/1‑94 (MQ=60)

                                                                 AAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAG                              <  SRR4302533.5932156/94‑1 (MQ=60)

                                                                 AAAGCGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAG                              <  SRR4302533.2128605/94‑1 (MQ=60)

                                                                   AGCGGACTGCAGAAAGATCGGTCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCT                            <  SRR4302533.2582769/94‑1 (MQ=60)

                                                                     CGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGA                          <  SRR4302533.982287/94‑1 (MQ=60)

                                                                     CGGACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGA                          >  SRR4302533.3612364/1‑94 (MQ=60)

                                                                       GACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATA                        >  SRR4302533.934785/1‑94 (MQ=60)

                                                                       GACTGCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATA                        <  SRR4302533.4612883/94‑1 (MQ=60)

                                                                           GCAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCA                    <  SRR4302533.284283/94‑1 (MQ=60)

                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAG                   >  SRR4302533.2711033/1‑94 (MQ=60)

                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAG                   <  SRR4302533.4627773/94‑1 (MQ=60)

                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAG                   >  SRR4302533.767481/1‑94 (MQ=60)

                                                                            CAGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAG                   >  SRR4302533.136425/1‑94 (MQ=60)

                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC                  >  SRR4302533.4010323/1‑94 (MQ=60)

                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC                  >  SRR4302533.188841/1‑94 (MQ=60)

                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC                  >  SRR4302533.3701557/1‑94 (MQ=60)

                                                                             AGAAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGC                  >  SRR4302533.4355147/1‑94 (MQ=60)

                                                                               AAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCA                >  SRR4302533.5883588/1‑94 (MQ=60)

                                                                               AAAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCA                <  SRR4302533.5738656/94‑1 (MQ=60)

                                                                                AAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAG               >  SRR4302533.5184218/1‑94 (MQ=60)

                                                                                AAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAG               >  SRR4302533.456251/1‑94 (MQ=60)

                                                                                AAGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAG               <  SRR4302533.187345/94‑1 (MQ=60)

                                                                                 AGATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGA              >  SRR4302533.3054662/1‑94 (MQ=60)

                                                                                  GATCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGAT             <  SRR4302533.4640846/94‑1 (MQ=60)

                                                                                    TCGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCC           <  SRR4302533.4903213/94‑1 (MQ=60)

                                                                                     CGGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCC          >  SRR4302533.3980745/1‑94 (MQ=60)

                                                                                      GGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCT         >  SRR4302533.323542/1‑94 (MQ=60)

                                                                                      GGGCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCT         <  SRR4302533.4447064/94‑1 (MQ=60)

                                                                                        GCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGA       <  SRR4302533.2561828/94‑1 (MQ=60)

                                                                                        GCTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGA       >  SRR4302533.5635800/1‑94 (MQ=60)

                                                                                         CTTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAG      <  SRR4302533.1161325/94‑1 (MQ=60)

                                                                                          TTCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGG     <  SRR4302533.747588/94‑1 (MQ=60)

                                                                                           TCCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGC    <  SRR4302533.1099147/94‑1 (MQ=60)

                                                                                            CCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCA   <  SRR4302533.2855532/94‑1 (MQ=60)

                                                                                            CCGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCA   <  SRR4302533.2980672/94‑1 (MQ=60)

                                                                                             CGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAG  >  SRR4302533.2630561/1‑94 (MQ=60)

GCCTCGAGTTTATCGATAGCCCCACAAAAGGTGTCATATTCACGACTGCCAATACCGATTGCGCCAAAGCGGACTGCAGAAAGATCGGGCTTCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAG  >  NC_000913/3923764‑3923950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`