Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,938,723	C→T	R28R (CGG→CGA)	yiePs ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,938,723	0	C	T	100.0%	976.9 / NA	261	R28R (CGG→CGA)	yiePs	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (131/130); total (131/130)

Only 100 of 264 total aligned reads displayed.

GTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAA  >  NC_000913/3938633‑3938811

 tGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGa                                                                                       >  1:1248207/1‑93 (MQ=255)

  gATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAg                                                                                      >  1:4458980/1‑93 (MQ=255)

    tCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTa                                                                                    >  2:1455352/1‑93 (MQ=255)

    tCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTa                                                                                    >  1:433492/1‑93 (MQ=255)

     cGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTAc                                                                                   <  1:2876992/93‑1 (MQ=255)

        tGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCaa                                                                                <  1:948744/93‑1 (MQ=255)

         gACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAAt                                                                               >  2:3574978/1‑93 (MQ=255)

          aCCTTATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAAtt                                                                              <  1:1116578/93‑1 (MQ=255)

          aCCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAAtt                                                                              <  2:817179/93‑1 (MQ=255)

             tgatgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgc                                                                           <  1:1684823/93‑1 (MQ=255)

             tgatgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgc                                                                           >  2:312257/1‑93 (MQ=255)

             tgatgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgc                                                                           <  2:4857491/93‑1 (MQ=255)

             tgatgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgc                                                                           <  2:5102106/93‑1 (MQ=255)

                tgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTGCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgcggt                                                                        <  1:2735817/93‑1 (MQ=255)

                tgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgcggt                                                                        >  2:6189574/1‑93 (MQ=255)

                tgaAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgcggt                                                                        >  1:659623/1‑93 (MQ=255)

                    aGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgcggtcgcg                                                                    <  2:1633630/93‑1 (MQ=255)

                    aGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgcggtcgcg                                                                    <  2:5201026/93‑1 (MQ=255)

                     gTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgcggtcgcgg                                                                   >  1:806679/1‑93 (MQ=255)

                     gTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATtcgcggtcgcgg                                                                   <  1:307540/93‑1 (MQ=255)

                      ttCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTcgcggtcgcggt                                                                  >  2:2531913/1‑93 (MQ=255)

                      ttCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTcgcggtcgcggt                                                                  >  2:4912902/1‑93 (MQ=255)

                      ttCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTcgcggtcgcggt                                                                  >  1:5186099/1‑93 (MQ=255)

                       tctcTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTa                                                                 >  1:1193979/1‑93 (MQ=255)

                       tctcTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTa                                                                 >  1:4959659/1‑93 (MQ=255)

                        ctctTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTAGCGGTCGCGGTaa                                                                >  2:2259509/1‑93 (MQ=255)

                         tcttctGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATGCGCGGTCGCGGTaaa                                                               <  2:5752737/93‑1 (MQ=255)

                          cttctGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTaaaa                                                              <  2:1839656/93‑1 (MQ=255)

                          cttctGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTaaaa                                                              >  1:469389/1‑93 (MQ=255)

                           ttctGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAAc                                                             <  2:5638017/93‑1 (MQ=255)

                           ttctGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAAc                                                             <  1:5461659/93‑1 (MQ=255)

                                 cATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATccc                                                       >  1:2175789/1‑93 (MQ=255)

                                 cATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGCCATGCCTCGAGTACCAATTCGCGGTCGCGGTAAAACCATccc                                                       <  1:2305446/93‑1 (MQ=255)

                                     caccaGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCtttt                                                   <  2:2654425/93‑1 (MQ=255)

                                     caccaGGTAAGCAATTCCTCATCAAGAAAATTCCAGTTCGATTGTGGCATCACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCtttt                                                   <  1:3378171/93‑1 (MQ=255)

                                      accaGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTg                                                  >  1:5097735/1‑93 (MQ=255)

                                      accaGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTg                                                  >  2:1940462/1‑93 (MQ=255)

                                      accaGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTg                                                  >  1:258267/1‑93 (MQ=255)

                                       ccaGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGc                                                 >  1:1561943/1‑93 (MQ=255)

                                        caGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTACAACCATCCCTTTTGcc                                                >  1:1464393/1‑93 (MQ=255)

                                        caGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGcc                                                >  2:418169/1‑93 (MQ=255)

                                         aGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCg                                               >  1:5066163/1‑93 (MQ=255)

                                         aGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCg                                               <  2:5940010/93‑1 (MQ=255)

                                         aGGGAAGCAATTCCTGATCAAGAAAATTCCAGGTCGAGTGTGGCATGAGTCGAGTACCAATTCGCCGTCGCGGCAAAGCCATCCCTGTTGCCg                                               >  2:3154284/1‑93 (MQ=255)

                                          ggTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGt                                              >  1:3908664/1‑93 (MQ=255)

                                          ggTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCAACCCTTTTGCCGt                                              >  2:2872824/1‑93 (MQ=255)

                                           gTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGtt                                             <  1:3584226/93‑1 (MQ=255)

                                            tAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTa                                            >  1:576687/1‑93 (MQ=255)

                                             aaGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTaa                                           <  1:3442757/93‑1 (MQ=255)

                                             aaGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTaa                                           <  1:5303128/93‑1 (MQ=255)

                                             aaGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTaa                                           <  2:3682235/93‑1 (MQ=255)

                                              aGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAc                                          >  1:1424945/1‑93 (MQ=255)

                                                cAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGt                                        <  1:5961562/93‑1 (MQ=255)

                                                cAATCCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGt                                        <  2:116715/93‑1 (MQ=255)

                                                 aaTTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGtt                                       >  2:5538030/1‑93 (MQ=255)

                                                   ttCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGtttt                                     >  1:2804015/1‑93 (MQ=255)

                                                   ttCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGtttt                                     >  2:4585721/1‑93 (MQ=255)

                                                   ttCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGtttt                                     <  1:5649338/93‑1 (MQ=255)

                                                   ttCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGtttt                                     >  1:499173/1‑93 (MQ=255)

                                                     ccTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGa                                   <  2:381738/93‑1 (MQ=255)

                                                      cTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGAc                                  <  1:3150619/93‑1 (MQ=255)

                                                       tGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGAcc                                 <  2:2937289/93‑1 (MQ=255)

                                                        gATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCg                                <  2:875285/93‑1 (MQ=255)

                                                         aTCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGc                               <  2:2146169/93‑1 (MQ=255)

                                                         aTCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGc                               <  1:572583/93‑1 (MQ=255)

                                                         aTCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGc                               <  1:1373523/93‑1 (MQ=255)

                                                          tCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCt                              <  1:1748635/93‑1 (MQ=255)

                                                          tCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCt                              >  2:4349081/1‑93 (MQ=255)

                                                            aaGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTc                            <  2:3301275/93‑1 (MQ=255)

                                                            aaGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTc                            >  1:704027/1‑93 (MQ=255)

                                                             aGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcg                           <  2:5265440/93‑1 (MQ=255)

                                                              gAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgc                          <  1:3111541/93‑1 (MQ=255)

                                                              gAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgc                          <  1:881461/93‑1 (MQ=255)

                                                               aaaaTTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgcg                         <  2:4452367/93‑1 (MQ=255)

                                                               aaaaTTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTcgcg                         >  2:3636302/1‑93 (MQ=255)

                                                                 aaTTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGTTCGCGGTAAAACCAGCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTa                       <  2:1729464/93‑1 (MQ=255)

                                                                 aaTTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTa                       >  1:4070718/1‑93 (MQ=255)

                                                                 aaTTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTa                       <  2:405310/93‑1 (MQ=255)

                                                                 aaTTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTa                       <  2:1593066/93‑1 (MQ=255)

                                                                 aaTTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTa                       <  1:103980/93‑1 (MQ=255)

                                                                   ttCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAcc                     >  2:4417528/1‑93 (MQ=255)

                                                                   ttCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAcc                     >  2:5797893/1‑93 (MQ=255)

                                                                     ccAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGc                   <  1:4600861/93‑1 (MQ=255)

                                                                      cAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTGTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCt                  <  2:3012733/93‑1 (MQ=255)

                                                                       aGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGGAAAACCATCCCTCCTGCCGGGAACGGATTGACCGCGTCGCGTACCGCTg                 >  2:6305541/1‑93 (MQ=255)

                                                                         ttCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTa               >  2:273976/1‑93 (MQ=255)

                                                                           cGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACg             >  1:3998122/1‑93 (MQ=255)

                                                                             aTTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGac           <  1:248219/93‑1 (MQ=255)

                                                                             aTTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGac           >  1:2045378/1‑93 (MQ=255)

                                                                             aTTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGac           >  2:2465686/1‑93 (MQ=255)

                                                                             aTTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGac           <  1:5532554/93‑1 (MQ=255)

                                                                             aTTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGac           >  1:6118141/1‑93 (MQ=255)

                                                                                gtgGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGactca        <  1:334063/93‑1 (MQ=255)

                                                                                gtgGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGactca        >  2:6035254/1‑93 (MQ=255)

                                                                                  ggCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGactcact      <  2:5400062/93‑1 (MQ=255)

                                                                                  ggCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGactcact      <  2:3765425/93‑1 (MQ=255)

                                                                                   gCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACTactcactc     >  2:1280867/1‑93 (MQ=255)

                                                                                    cATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTcc    <  1:6274811/93‑1 (MQ=255)

                                                                                     aTGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTTCCTCCa   >  2:1314051/1‑93 (MQ=255)

                                                                                      tGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCaa  <  2:5816282/93‑1 (MQ=255)

GTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAA  >  NC_000913/3938633‑3938811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATT  >  NC_000913/3938630‑3938814

AAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACT                                                                                             >  SRR4302533.2984469/1‑94 (MQ=60)

AAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACT                                                                                             <  SRR4302533.70082/94‑1 (MQ=60)

AAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACT                                                                                             <  SRR4302533.3759772/94‑1 (MQ=60)

  AGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCG                                                                                           <  SRR4302533.6048829/94‑1 (MQ=60)

   GTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGA                                                                                          >  SRR4302533.1255665/1‑94 (MQ=60)

   GTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGA                                                                                          <  SRR4302533.704592/94‑1 (MQ=60)

   GTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGA                                                                                          >  SRR4302533.3577461/1‑94 (MQ=60)

    TGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAG                                                                                         >  SRR4302533.4485950/1‑94 (MQ=60)

    TGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAG                                                                                         <  SRR4302533.5285115/94‑1 (MQ=60)

    TGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAG                                                                                         <  SRR4302533.5703358/94‑1 (MQ=60)

     GATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGT                                                                                        <  SRR4302533.5125766/94‑1 (MQ=60)

     GATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGT                                                                                        >  SRR4302533.5712193/1‑94 (MQ=60)

      ATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTA                                                                                       >  SRR4302533.436077/1‑94 (MQ=60)

      ATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGCA                                                                                       >  SRR4302533.579394/1‑94 (MQ=60)

       TCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTAC                                                                                      <  SRR4302533.5009165/94‑1 (MQ=60)

        CGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACC                                                                                     <  SRR4302533.2894697/94‑1 (MQ=60)

         GATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCA                                                                                    <  SRR4302533.400148/94‑1 (MQ=60)

           TGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAAT                                                                                  <  SRR4302533.954317/94‑1 (MQ=60)

           TGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAAT                                                                                  <  SRR4302533.4904639/94‑1 (MQ=60)

             ACCTTATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTC                                                                                <  SRR4302533.1123204/94‑1 (MQ=60)

             ACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTC                                                                                >  SRR4302533.1637392/1‑94 (MQ=60)

              CCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCG                                                                               <  SRR4302533.3168713/94‑1 (MQ=60)

               CTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGC                                                                              <  SRR4302533.1494331/94‑1 (MQ=60)

               CTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGC                                                                              >  SRR4302533.6055089/1‑94 (MQ=60)

               CTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGC                                                                              <  SRR4302533.2495165/94‑1 (MQ=60)

                TGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCG                                                                             <  SRR4302533.1695030/94‑1 (MQ=60)

                TGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCG                                                                             <  SRR4302533.5034095/94‑1 (MQ=60)

                  ATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGT                                                                           >  SRR4302533.663510/1‑94 (MQ=60)

                  ATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGT                                                                           <  SRR4302533.2872568/94‑1 (MQ=60)

                  ATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGT                                                                           >  SRR4302533.4089176/1‑94 (MQ=60)

                   TGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTGCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTC                                                                          <  SRR4302533.2752599/94‑1 (MQ=60)

                   TGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTC                                                                          <  SRR4302533.4413207/94‑1 (MQ=60)

                    GAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCG                                                                         >  SRR4302533.390689/1‑94 (MQ=60)

                      AAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCG                                                                       <  SRR4302533.3100266/94‑1 (MQ=60)

                       AGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGG                                                                      >  SRR4302533.811417/1‑94 (MQ=60)

                        GTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGT                                                                     >  SRR4302533.903688/1‑94 (MQ=60)

                        GTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGT                                                                     <  SRR4302533.309421/94‑1 (MQ=60)

                        GTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGT                                                                     >  SRR4302533.5217402/1‑94 (MQ=60)

                         TTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTA                                                                    >  SRR4302533.4989706/1‑94 (MQ=60)

                         TTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTA                                                                    >  SRR4302533.1201157/1‑94 (MQ=60)

                           CTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAA                                                                  >  SRR4302533.1531898/1‑94 (MQ=60)

                            TCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAA                                                                 >  SRR4302533.472193/1‑94 (MQ=60)

                             CTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAAC                                                                >  SRR4302533.1136246/1‑94 (MQ=60)

                              TTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACC                                                               <  SRR4302533.5494564/94‑1 (MQ=60)

                                   TCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCC                                                          >  SRR4302533.2189199/1‑94 (MQ=60)

                                    CATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGCCATGCCTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCT                                                         <  SRR4302533.2319728/94‑1 (MQ=60)

                                     ATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTT                                                        <  SRR4302533.4528725/94‑1 (MQ=60)

                                       CCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTT                                                      >  SRR4302533.218846/1‑94 (MQ=60)

                                       CCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTT                                                      >  SRR4302533.1609445/1‑94 (MQ=60)

                                        CACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTG                                                     >  SRR4302533.259838/1‑94 (MQ=60)

                                        CACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTG                                                     >  SRR4302533.5128535/1‑94 (MQ=60)

                                        CACCAGGTAAGCAATTCCTCATCAAGAAAATTCCAGTTCGATTGTGGCATCACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTG                                                     <  SRR4302533.3399028/94‑1 (MQ=60)

                                         ACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGC                                                    >  SRR4302533.3076995/1‑94 (MQ=60)

                                         ACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGC                                                    >  SRR4302533.1571346/1‑94 (MQ=60)

                                          CCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTACAACCATCCCTTTTGCC                                                   >  SRR4302533.1473220/1‑94 (MQ=60)

                                           CAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCG                                                  >  SRR4302533.5096762/1‑94 (MQ=60)

                                            AGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGT                                                 >  SRR4302533.415513/1‑94 (MQ=60)

                                            AGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGT                                                 >  SRR4302533.3932537/1‑94 (MQ=60)

                                              GTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTA                                               >  SRR4302533.2805932/1‑94 (MQ=60)

                                              GTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTA                                               >  SRR4302533.580089/1‑94 (MQ=60)

                                              GTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTA                                               <  SRR4302533.3606299/94‑1 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             >  SRR4302533.3398214/1‑94 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             <  SRR4302533.259533/94‑1 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             >  SRR4302533.5827874/1‑94 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             <  SRR4302533.3120286/94‑1 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             <  SRR4302533.1823904/94‑1 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             <  SRR4302533.5334899/94‑1 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             >  SRR4302533.1433563/1‑94 (MQ=60)

                                                AAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAAC                                             <  SRR4302533.3464021/94‑1 (MQ=60)

                                                 AGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACG                                            >  SRR4302533.1413781/1‑94 (MQ=60)

                                                  GCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGT                                           >  SRR4302533.2601322/1‑94 (MQ=60)

                                                  GCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGT                                           <  SRR4302533.4701654/94‑1 (MQ=60)

                                                   CAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTT                                          <  SRR4302533.3774763/94‑1 (MQ=60)

                                                   CAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTT                                          <  SRR4302533.5997629/94‑1 (MQ=60)

                                                    AATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTT                                         <  SRR4302533.895971/94‑1 (MQ=60)

                                                    AATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTT                                         <  SRR4302533.457481/94‑1 (MQ=60)

                                                     ATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTT                                        >  SRR4302533.6002845/1‑94 (MQ=60)

                                                     ATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTT                                        >  SRR4302533.2821271/1‑94 (MQ=60)

                                                     ATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTT                                        >  SRR4302533.1160908/1‑94 (MQ=60)

                                                     ATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTT                                        >  SRR4302533.502145/1‑94 (MQ=60)

                                                      TTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTG                                       <  SRR4302533.5683489/94‑1 (MQ=60)

                                                      TTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTG                                       <  SRR4302533.5480402/94‑1 (MQ=60)

                                                       TCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGA                                      <  SRR4302533.841982/94‑1 (MQ=60)

                                                        CCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGAC                                     <  SRR4302533.2797684/94‑1 (MQ=60)

                                                         CTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACC                                    <  SRR4302533.3383085/94‑1 (MQ=60)

                                                         CTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACC                                    <  SRR4302533.5640811/94‑1 (MQ=60)

                                                         CTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACC                                    >  SRR4302533.2665645/1‑94 (MQ=60)

                                                         CTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACC                                    <  SRR4302533.3169991/94‑1 (MQ=60)

                                                         CTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACC                                    <  SRR4302533.6316742/94‑1 (MQ=60)

                                                          TGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCG                                   <  SRR4302533.2171047/94‑1 (MQ=60)

                                                          TGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCG                                   >  SRR4302533.1289583/1‑94 (MQ=60)

                                                          TGATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCG                                   <  SRR4302533.5205015/94‑1 (MQ=60)

                                                           GATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGC                                  <  SRR4302533.536359/94‑1 (MQ=60)

                                                            ATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCT                                 <  SRR4302533.1732489/94‑1 (MQ=60)

                                                            ATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCT                                 <  SRR4302533.1381786/94‑1 (MQ=60)

                                                            ATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCT                                 >  SRR4302533.833677/1‑94 (MQ=60)

                                                            ATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCT                                 <  SRR4302533.575962/94‑1 (MQ=60)

                                                            ATCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCT                                 <  SRR4302533.761822/94‑1 (MQ=60)

                                                             TCAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTT                                <  SRR4302533.1759281/94‑1 (MQ=60)

                                                              CAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTC                               >  SRR4302533.5994876/1‑94 (MQ=60)

                                                              CAAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTC                               >  SRR4302533.708187/1‑94 (MQ=60)

                                                               AAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCG                              <  SRR4302533.6299228/94‑1 (MQ=60)

                                                               AAGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCG                              <  SRR4302533.4832749/94‑1 (MQ=60)

                                                                AGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGC                             >  SRR4302533.498935/1‑94 (MQ=60)

                                                                AGAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGC                             >  SRR4302533.3544834/1‑94 (MQ=60)

                                                                 GAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCG                            <  SRR4302533.3130670/94‑1 (MQ=60)

                                                                 GAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCG                            <  SRR4302533.886639/94‑1 (MQ=60)

                                                                 GAAAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCG                            >  SRR4302533.1472001/1‑94 (MQ=60)

                                                                   AAATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTA                          >  SRR4302533.4095499/1‑94 (MQ=60)

                                                                    AATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAC                         <  SRR4302533.1206434/94‑1 (MQ=60)

                                                                    AATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAC                         <  SRR4302533.1352468/94‑1 (MQ=60)

                                                                    AATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAC                         >  SRR4302533.1984292/1‑94 (MQ=60)

                                                                    AATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAC                         >  SRR4302533.5210451/1‑94 (MQ=60)

                                                                    AATTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTAC                         <  SRR4302533.104631/94‑1 (MQ=60)

                                                                      TTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCG                       >  SRR4302533.655525/1‑94 (MQ=60)

                                                                      TTCCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCC                       >  SRR4302533.3294810/1‑94 (MQ=60)

                                                                        CCAGTTCGATTGTGGCATGACTCGAGTACCAATTTGCGGTCGCGGCAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCT                     >  SRR4302533.1389911/1‑94 (MQ=60)

                                                                        CCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCT                     >  SRR4302533.3236319/1‑94 (MQ=60)

                                                                        CCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCT                     >  SRR4302533.4087000/1‑94 (MQ=60)

                                                                        CCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCT                     <  SRR4302533.4628735/94‑1 (MQ=60)

                                                                        CCAGTTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCAGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCTCTTCGCGTACCGCT                     >  SRR4302533.3405931/1‑94 (MQ=60)

                                                                            TTCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTACAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTAC                 >  SRR4302533.1077950/1‑94 (MQ=60)

                                                                             TCGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACG                >  SRR4302533.4022464/1‑94 (MQ=60)

                                                                              CGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGA               <  SRR4302533.5611145/94‑1 (MQ=60)

                                                                              CGATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGA               >  SRR4302533.3040375/1‑94 (MQ=60)

                                                                               GATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGAC              >  SRR4302533.6155041/1‑94 (MQ=60)

                                                                               GATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGAC              >  SRR4302533.2057986/1‑94 (MQ=60)

                                                                                ATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACT             <  SRR4302533.249752/94‑1 (MQ=60)

                                                                                ATTGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACT             <  SRR4302533.5565956/94‑1 (MQ=60)

                                                                                  TGTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAGCCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCA           <  SRR4302533.2273777/94‑1 (MQ=60)

                                                                                   GTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCAC          <  SRR4302533.694091/94‑1 (MQ=60)

                                                                                   GTGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCAC          <  SRR4302533.336106/94‑1 (MQ=60)

                                                                                    TGGCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACT         <  SRR4302533.5128346/94‑1 (MQ=60)

                                                                                      GCATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCC       <  SRR4302533.5544445/94‑1 (MQ=60)

                                                                                       CATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCA      >  SRR4302533.4392932/1‑94 (MQ=60)

                                                                                       CATGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCA      <  SRR4302533.6312285/94‑1 (MQ=60)

                                                                                         TGACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAA    <  SRR4302533.2352313/94‑1 (MQ=60)

                                                                                          GACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAAT   >  SRR4302533.6151733/1‑94 (MQ=60)

                                                                                           ACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATT  <  SRR4302533.3038799/94‑1 (MQ=60)

                                                                                           ACTCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATT  <  SRR4302533.3528213/94‑1 (MQ=60)

AAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAGCAATTCCTGATCAAGAAAATTCCAGTTCGATTGTGGCATGACCCGAGTACCAATTCGCGGTCGCGGTAAAACCATCCCTTTTGCCGTTAACGTTTTGACCGCTTCGCGTACCGCTGTACGACTCACTCCAAATT  >  NC_000913/3938630‑3938814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`