Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,438,720 T→C H198R (CAC→CGC)  rpsD ← 30S ribosomal subunit protein S4

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,438,7200TC98.8% 2251.8 / 4.5 663H198R (CAC→CGC) rpsD30S ribosomal subunit protein S4
Reads supporting (aligned to +/- strand):  ref base T (3/5);  new base C (339/315);  total (343/320)
Fisher's exact test for biased strand distribution p-value = 4.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 693 total aligned reads displayed.

AGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGTGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTG  >  NC_000913/3438629‑3438810
                                                                                           |                                                                                          
aGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGgcgt                                                                                          >  2:7248615/1‑94 (MQ=255)
aGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGgcgt                                                                                          >  2:1450111/1‑94 (MQ=255)
  gcgcGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTc                                                                                        <  1:8151088/94‑1 (MQ=255)
    gcgGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGt                                                                                      >  1:4141667/1‑94 (MQ=255)
     cgGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGcgttcgtt                                                                                     >  1:9437351/1‑94 (MQ=255)
      ggTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTa                                                                                    <  2:1243700/94‑1 (MQ=255)
       gTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTaa                                                                                   <  1:8279808/94‑1 (MQ=255)
        ttttAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAAt                                                                                  >  2:9228064/1‑94 (MQ=255)
        ttttAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAAt                                                                                  <  2:10467063/94‑1 (MQ=255)
        ttttAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAAt                                                                                  <  2:3517947/94‑1 (MQ=255)
         tttAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATg                                                                                 <  2:341099/94‑1 (MQ=255)
          ttAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGCAAAGCTCGACGATGAGGCGTTCGGTACTGt                                                                                >  1:2037713/1‑94 (MQ=255)
            aGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTcc                                                                              >  2:69150/1‑94 (MQ=255)
            aGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTcc                                                                              <  2:866385/94‑1 (MQ=255)
             aaaaCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCg                                                                             <  2:5697472/93‑1 (MQ=255)
              aaaCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGc                                                                            >  2:7673642/1‑94 (MQ=255)
               aaCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGca                                                                           <  1:9272939/94‑1 (MQ=255)
                aCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcag                                                                          <  1:6683294/94‑1 (MQ=255)
                 ctctGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcaga                                                                         >  2:4132666/1‑94 (MQ=255)
                  tctGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcagac                                                                        <  2:3982440/94‑1 (MQ=255)
                  tctGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcagac                                                                        >  1:9812512/1‑94 (MQ=255)
                     gTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcagacaga                                                                     <  2:979525/94‑1 (MQ=255)
                     gTCACAGAACCCTGCATTGTGTCCTCTCTTTGGGACGAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGTGTTCGTTAATGGCCGcagacaga                                                                     <  1:10182704/94‑1 (MQ=255)
                      tCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGAt                                                                    >  2:10601866/1‑94 (MQ=255)
                      tCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGAt                                                                    >  1:1852763/1‑94 (MQ=255)
                       cacaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATc                                                                   <  1:4665288/94‑1 (MQ=255)
                       cacaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATc                                                                   >  1:259734/1‑94 (MQ=255)
                       cacaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATc                                                                   <  2:2303739/94‑1 (MQ=255)
                        acaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCa                                                                  <  2:10108003/94‑1 (MQ=255)
                        acaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCa                                                                  >  1:8553746/1‑94 (MQ=255)
                        acaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCa                                                                  >  2:1843288/1‑94 (MQ=255)
                        acaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCa                                                                  <  1:10595438/94‑1 (MQ=255)
                          aGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGa                                                                <  1:9107260/94‑1 (MQ=255)
                          aGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGa                                                                <  2:10295497/94‑1 (MQ=255)
                          aGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGa                                                                <  2:4571103/94‑1 (MQ=255)
                               ccTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCt                                                           >  1:4312661/1‑94 (MQ=255)
                                cTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTc                                                          >  2:519271/1‑94 (MQ=255)
                                cTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCAGCAGACAGATCAGCACGCTc                                                          >  1:5243398/1‑94 (MQ=255)
                                 tGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTcc                                                         <  1:655499/94‑1 (MQ=255)
                                 tGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTcc                                                         <  2:4882199/94‑1 (MQ=255)
                                  gCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCg                                                        <  1:1178390/94‑1 (MQ=255)
                                  gCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCg                                                        <  1:7903432/94‑1 (MQ=255)
                                   cATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCgg                                                       <  1:869096/94‑1 (MQ=255)
                                    aTTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGc                                                      <  1:7307558/94‑1 (MQ=255)
                                        tgtCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTAc                                                  >  1:2170463/1‑94 (MQ=255)
                                         gtCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGCTCAGAACGCTCCGGCTTACg                                                 >  2:4762227/1‑94 (MQ=255)
                                         gtCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACg                                                 <  2:5535140/94‑1 (MQ=255)
                                         gtCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACg                                                 >  1:2745469/1‑94 (MQ=255)
                                         gtCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACg                                                 >  2:6162482/1‑94 (MQ=255)
                                            ctctctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCtt                                              >  1:5411446/1‑94 (MQ=255)
                                            ctctctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCtt                                              <  1:5753392/94‑1 (MQ=255)
                                             tctctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTa                                             >  1:4792941/1‑94 (MQ=255)
                                             tctctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTa                                             <  1:3963641/94‑1 (MQ=255)
                                              ctctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTaa                                            >  2:3715960/1‑94 (MQ=255)
                                               tctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTaaa                                           >  1:6094435/1‑94 (MQ=255)
                                                ctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAc                                          <  1:3255619/94‑1 (MQ=255)
                                                ctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAc                                          <  1:1577395/94‑1 (MQ=255)
                                                    ggTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTAc                                      >  2:238652/1‑94 (MQ=255)
                                                     gTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTAcc                                     <  1:1515666/94‑1 (MQ=255)
                                                      tACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCt                                    >  1:5690339/1‑94 (MQ=255)
                                                      tACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCt                                    <  2:2022236/94‑1 (MQ=255)
                                                      tACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCACCGGCTTACGCTTAAACGTACCt                                    >  1:7590973/1‑94 (MQ=255)
                                                       aCTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCtt                                   >  1:9547600/1‑94 (MQ=255)
                                                       aCTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCtt                                   >  2:7408351/1‑94 (MQ=255)
                                                        cTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTc                                  <  1:10020723/94‑1 (MQ=255)
                                                        cTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTc                                  <  2:9439261/94‑1 (MQ=255)
                                                        cTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTc                                  >  1:7436448/1‑94 (MQ=255)
                                                         tAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTcc                                 >  1:10127256/1‑94 (MQ=255)
                                                          aaGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCa                                <  2:2708252/94‑1 (MQ=255)
                                                          aaGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCa                                >  1:8852861/1‑94 (MQ=255)
                                                          aaGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCa                                >  1:298149/1‑94 (MQ=255)
                                                          aaGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCa                                <  2:5446894/94‑1 (MQ=255)
                                                           aGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCAt                               <  1:896316/94‑1 (MQ=255)
                                                            gCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATc                              >  2:2133977/1‑94 (MQ=255)
                                                            gCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATc                              <  1:4475360/94‑1 (MQ=255)
                                                               ttACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTg                           <  1:5071913/94‑1 (MQ=255)
                                                               ttACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTg                           >  1:3667646/1‑94 (MQ=255)
                                                               ttACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTg                           <  2:6755103/94‑1 (MQ=255)
                                                                tACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGc                          <  2:7945583/94‑1 (MQ=255)
                                                                 aCTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGcc                         >  2:5865282/1‑94 (MQ=255)
                                                                 aCTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGcc                         >  1:3503060/1‑94 (MQ=255)
                                                                  cTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCa                        >  1:7120641/1‑94 (MQ=255)
                                                                  cTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCa                        >  2:7600705/1‑94 (MQ=255)
                                                                   ttGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAg                       <  1:10362975/94‑1 (MQ=255)
                                                                   ttGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGATCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAg                       >  2:7122538/1‑94 (MQ=255)
                                                                            aGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACtt              >  2:10346003/1‑94 (MQ=255)
                                                                             gCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTc             >  1:2392259/1‑94 (MQ=255)
                                                                              cTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcc            >  2:6508010/1‑94 (MQ=255)
                                                                               tCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcca           >  1:639294/1‑94 (MQ=255)
                                                                               tCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcca           <  2:6389921/94‑1 (MQ=255)
                                                                                cgacgaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccag          <  2:8864836/94‑1 (MQ=255)
                                                                                 gacgaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccagc         >  1:6854718/1‑94 (MQ=255)
                                                                                 gacgaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccagc         >  2:1705911/1‑94 (MQ=255)
                                                                                   cgaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccagcca       >  1:6250100/1‑94 (MQ=255)
                                                                                    gaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccagccag      <  2:8254989/94‑1 (MQ=255)
                                                                                    gaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccagccag      >  2:2888396/1‑94 (MQ=255)
                                                                                       cAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGtt   <  1:9975296/94‑1 (MQ=255)
                                                                                       cAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGtt   >  1:5933913/1‑94 (MQ=255)
                                                                                       cAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGtt   <  1:8472525/94‑1 (MQ=255)
                                                                                       cAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGATTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAgggt   >  1:5566474/1‑92 (MQ=255)
                                                                                           |                                                                                          
AGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGTGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTG  >  NC_000913/3438629‑3438810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 318 total aligned reads displayed.
AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGCTG  >  NC_000913/3441201‑3441387
                                                                                             |                                                                                             
AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGA                                                                                               <  SRR4302545.9491550/94‑1 (MQ=60)
AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGA                                                                                               >  SRR4302545.17898/1‑94 (MQ=60)
AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGA                                                                                               >  SRR4302545.6766074/1‑94 (MQ=60)
 ATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGAC                                                                                              >  SRR4302545.9592186/1‑94 (MQ=60)
 ATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGAC                                                                                              >  SRR4302545.1621731/1‑94 (MQ=60)
 ATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGAC                                                                                              >  SRR4302545.122711/1‑94 (MQ=60)
  TCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACC                                                                                             >  SRR4302545.5684549/1‑94 (MQ=60)
  TCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACC                                                                                             <  SRR4302545.3993131/94‑1 (MQ=60)
  TCTGTTCGCCCAACCACATCAGGAACATGGGTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACC                                                                                             >  SRR4302545.6708224/1‑94 (MQ=60)
   CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCT                                                                                            <  SRR4302545.8284849/94‑1 (MQ=60)
   CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCT                                                                                            >  SRR4302545.6413015/1‑94 (MQ=60)
   CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCT                                                                                            >  SRR4302545.349456/1‑94 (MQ=60)
    TGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTT                                                                                           >  SRR4302545.4988334/1‑94 (MQ=60)
    TGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTT                                                                                           <  SRR4302545.3255149/94‑1 (MQ=60)
    TGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTT                                                                                           >  SRR4302545.10223692/1‑94 (MQ=60)
     GTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTG                                                                                          >  SRR4302545.3019773/1‑94 (MQ=60)
     GTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTG                                                                                          >  SRR4302545.5788370/1‑94 (MQ=60)
     GTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTG                                                                                          <  SRR4302545.846625/94‑1 (MQ=60)
      TTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGC                                                                                         >  SRR4302545.6330226/1‑94 (MQ=60)
      TTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGC                                                                                         >  SRR4302545.1261910/1‑94 (MQ=60)
       TCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCA                                                                                        <  SRR4302545.7131073/94‑1 (MQ=60)
        CGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAT                                                                                       <  SRR4302545.6084418/94‑1 (MQ=60)
        CGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAT                                                                                       <  SRR4302545.620936/94‑1 (MQ=60)
         GCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATA                                                                                      >  SRR4302545.4999332/1‑94 (MQ=60)
         GCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATA                                                                                      >  SRR4302545.4456279/1‑94 (MQ=60)
         GCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATA                                                                                      >  SRR4302545.8180426/1‑94 (MQ=60)
         GCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATA                                                                                      <  SRR4302545.2045319/94‑1 (MQ=60)
         GCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATA                                                                                      <  SRR4302545.1773412/94‑1 (MQ=60)
         GCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCACGGGTTAATCACCAGACCTTGCATA                                                                                      >  SRR4302545.8180425/1‑94 (MQ=60)
          CCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATAC                                                                                     >  SRR4302545.3247855/1‑94 (MQ=60)
           CCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACC                                                                                    <  SRR4302545.1182901/94‑1 (MQ=60)
           CCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACC                                                                                    <  SRR4302545.10629929/94‑1 (MQ=60)
           CCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACC                                                                                    >  SRR4302545.8805563/1‑94 (MQ=60)
            CAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCA                                                                                   >  SRR4302545.9983621/1‑94 (MQ=60)
            CAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCA                                                                                   <  SRR4302545.3930284/94‑1 (MQ=60)
            CAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCA                                                                                   <  SRR4302545.7433222/94‑1 (MQ=60)
            CAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCA                                                                                   <  SRR4302545.8532746/94‑1 (MQ=60)
            CAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCA                                                                                   >  SRR4302545.1697459/1‑94 (MQ=60)
            CAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCA                                                                                   <  SRR4302545.10039968/94‑1 (MQ=60)
             AACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAG                                                                                  >  SRR4302545.4703520/1‑94 (MQ=60)
             AACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAG                                                                                  >  SRR4302545.5321535/1‑94 (MQ=60)
             AACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAG                                                                                  >  SRR4302545.6464782/1‑94 (MQ=60)
             AACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAG                                                                                  <  SRR4302545.4153977/94‑1 (MQ=60)
             AACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAG                                                                                  >  SRR4302545.7144910/1‑94 (MQ=60)
             AACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAG                                                                                  >  SRR4302545.8910079/1‑94 (MQ=60)
              ACCACATCAGGAACATGGTTCCTTTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 <  SRR4302545.6205591/94‑1 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGCCCAGACTTACAACAGCGGTGAAGTAGAAGGCAAAGCCCGGGTTAATCAACAGGCCTTGCATGCCAGG                                                                                 <  SRR4302545.6994957/94‑1 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 <  SRR4302545.3516505/94‑1 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 >  SRR4302545.5113976/1‑94 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 <  SRR4302545.1108993/94‑1 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 >  SRR4302545.7932178/1‑94 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 <  SRR4302545.8653556/94‑1 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 >  SRR4302545.2045981/1‑94 (MQ=60)
              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                 >  SRR4302545.9416720/1‑94 (MQ=60)
               CCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGC                                                                                >  SRR4302545.4581280/1‑94 (MQ=60)
               CCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGC                                                                                >  SRR4302545.9713616/1‑94 (MQ=60)
                CACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCA                                                                               >  SRR4302545.615044/1‑94 (MQ=60)
                 ACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCAT                                                                              >  SRR4302545.4091741/1‑94 (MQ=60)
                 ACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCAT                                                                              <  SRR4302545.4459886/94‑1 (MQ=60)
                 ACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCAT                                                                              >  SRR4302545.3713155/1‑94 (MQ=60)
                 ACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGACCGGGTTAATCACCAGACCTTGCATACCAGGCAT                                                                              >  SRR4302545.8088252/1‑94 (MQ=60)
                  CATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATA                                                                             <  SRR4302545.2560084/94‑1 (MQ=60)
                  CATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATA                                                                             >  SRR4302545.2655486/1‑94 (MQ=60)
                  CATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATA                                                                             <  SRR4302545.6485761/94‑1 (MQ=60)
                  CATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATA                                                                             >  SRR4302545.8241412/1‑94 (MQ=60)
                   ATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATAT                                                                            <  SRR4302545.1138690/94‑1 (MQ=60)
                   ATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATAT                                                                            <  SRR4302545.3484669/94‑1 (MQ=60)
                     cagggactttgatcctttttccatgcgTACAACAGCGGTGAATTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTC                                                                          <  SRR4302545.3437789/67‑1 (MQ=60)
                     CAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTC                                                                          >  SRR4302545.104937/1‑94 (MQ=60)
                     CAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTC                                                                          <  SRR4302545.6820855/94‑1 (MQ=60)
                     CAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTC                                                                          <  SRR4302545.6820854/94‑1 (MQ=60)
                      AGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCG                                                                         <  SRR4302545.6749835/94‑1 (MQ=60)
                       GGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGG                                                                        >  SRR4302545.10646413/1‑94 (MQ=60)
                         AACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCA                                                                      <  SRR4302545.4291950/94‑1 (MQ=60)
                          ACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAG                                                                     <  SRR4302545.10005423/94‑1 (MQ=60)
                          ACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAG                                                                     <  SRR4302545.4001005/94‑1 (MQ=60)
                          ACATGGGTCCCGTGCCCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAG                                                                     <  SRR4302545.4001004/94‑1 (MQ=60)
                           CATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGA                                                                    >  SRR4302545.10565587/1‑94 (MQ=60)
                           CATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGA                                                                    >  SRR4302545.9082222/1‑94 (MQ=60)
                             TGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACC                                                                  <  SRR4302545.7306479/94‑1 (MQ=60)
                             TGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACC                                                                  <  SRR4302545.3770538/94‑1 (MQ=60)
                             TGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACC                                                                  >  SRR4302545.1013433/1‑94 (MQ=60)
                              GGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCG                                                                 <  SRR4302545.9384436/94‑1 (MQ=60)
                              GGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCG                                                                 <  SRR4302545.9749572/94‑1 (MQ=60)
                              GGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCG                                                                 <  SRR4302545.1688714/94‑1 (MQ=60)
                                TTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGT                                                               >  SRR4302545.5017760/1‑94 (MQ=60)
                                TTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGT                                                               <  SRR4302545.920669/94‑1 (MQ=60)
                                 TCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTA                                                              >  SRR4302545.8713475/1‑94 (MQ=60)
                                  CCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAG                                                             <  SRR4302545.6624337/94‑1 (MQ=60)
                                  CCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAG                                                             <  SRR4302545.8706783/94‑1 (MQ=60)
                                   CTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGC                                                            >  SRR4302545.5015596/1‑94 (MQ=60)
                                   CTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGC                                                            <  SRR4302545.7614189/94‑1 (MQ=60)
                                    TGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCA                                                           <  SRR4302545.3135839/94‑1 (MQ=60)
                                    TGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCA                                                           >  SRR4302545.8425091/1‑94 (MQ=60)
                                    TGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCA                                                           >  SRR4302545.8539032/1‑94 (MQ=60)
                                    TGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCA                                                           <  SRR4302545.8869236/94‑1 (MQ=60)
                                     GTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAA                                                          >  SRR4302545.3606619/1‑94 (MQ=60)
                                      TGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAT                                                         <  SRR4302545.1998904/94‑1 (MQ=60)
                                      TGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAT                                                         <  SRR4302545.1140322/94‑1 (MQ=60)
                                       GACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATA                                                        <  SRR4302545.10762772/94‑1 (MQ=60)
                                       GACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATA                                                        <  SRR4302545.8069597/94‑1 (MQ=60)
                                        ACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATAC                                                       <  SRR4302545.7228057/94‑1 (MQ=60)
                                         CCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACC                                                      >  SRR4302545.4866010/1‑94 (MQ=60)
                                         CCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACC                                                      <  SRR4302545.6940432/94‑1 (MQ=60)
                                         CCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACC                                                      <  SRR4302545.3886898/94‑1 (MQ=60)
                                            GACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGAT                                                   <  SRR4302545.3039197/94‑1 (MQ=60)
                                             ACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATC                                                  <  SRR4302545.7914389/94‑1 (MQ=60)
                                             ACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATC                                                  <  SRR4302545.7865218/94‑1 (MQ=60)
                                             ACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATC                                                  <  SRR4302545.1382229/94‑1 (MQ=60)
                                             ACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATC                                                  >  SRR4302545.9523728/1‑94 (MQ=60)
                                              CTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCG                                                 >  SRR4302545.9800508/1‑94 (MQ=60)
                                              CTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCG                                                 >  SRR4302545.7055875/1‑94 (MQ=60)
                                              CTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCG                                                 >  SRR4302545.9800507/1‑94 (MQ=60)
                                                TACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGAC                                               >  SRR4302545.4612617/1‑94 (MQ=60)
                                                TACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGAC                                               >  SRR4302545.2919891/1‑94 (MQ=60)
                                                 ACAACAGGGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGTATATTCGGCAGACCGGTAGCAATACCGATCGACT                                              <  SRR4302545.4659187/94‑1 (MQ=60)
                                                 ACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACT                                              <  SRR4302545.8924813/94‑1 (MQ=60)
                                                  CAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTG                                             >  SRR4302545.3126579/1‑94 (MQ=60)
                                                  CAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTG                                             >  SRR4302545.2737106/1‑94 (MQ=60)
                                                  CAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTG                                             <  SRR4302545.10916555/94‑1 (MQ=60)
                                                    ACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGA                                           <  SRR4302545.887887/94‑1 (MQ=60)
                                                    ACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGA                                           >  SRR4302545.4172751/1‑94 (MQ=60)
                                                     CAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGCCTGTAA                                          >  SRR4302545.8767255/1‑94 (MQ=60)
                                                     CAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAA                                          <  SRR4302545.1525276/94‑1 (MQ=60)
                                                     CAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAA                                          >  SRR4302545.8767253/1‑94 (MQ=60)
                                                      AGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAAT                                         <  SRR4302545.132547/94‑1 (MQ=60)
                                                      AGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAAT                                         >  SRR4302545.419961/1‑94 (MQ=60)
                                                       GCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATA                                        <  SRR4302545.8600253/94‑1 (MQ=60)
                                                        CGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATAT                                       >  SRR4302545.1315653/1‑94 (MQ=60)
                                                        CGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATAT                                       <  SRR4302545.3003052/94‑1 (MQ=60)
                                                         GGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGTATATT                                      >  SRR4302545.6807120/1‑94 (MQ=60)
                                                         GGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATT                                      <  SRR4302545.2574770/94‑1 (MQ=60)
                                                         GGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATT                                      <  SRR4302545.10313220/94‑1 (MQ=60)
                                                         GGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATT                                      >  SRR4302545.7347772/1‑94 (MQ=60)
                                                         GGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATT                                      <  SRR4302545.4764067/94‑1 (MQ=60)
                                                          GTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTG                                     >  SRR4302545.2329498/1‑94 (MQ=60)
                                                          GGGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTG                                     >  SRR4302545.4365661/1‑94 (MQ=60)
                                                           TGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGC                                    <  SRR4302545.2829108/94‑1 (MQ=60)
                                                            GAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCC                                   <  SRR4302545.1008370/94‑1 (MQ=60)
                                                             AAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCA                                  >  SRR4302545.324489/1‑94 (MQ=60)
                                                             AAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCA                                  <  SRR4302545.7995774/94‑1 (MQ=60)
                                                                 AGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCAC                              >  SRR4302545.10721432/1‑94 (MQ=60)
                                                                 AGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCAC                              >  SRR4302545.6301427/1‑94 (MQ=60)
                                                                 AGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGGAGCAATACCGATCGACTGGAATATTGCCAGCAC                              >  SRR4302545.530880/1‑94 (MQ=60)
                                                                  GAATGCAAAGCCCGGGTTACTCACCAGCCCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCCACTGGAATATTGCCAGCACC                             <  SRR4302545.1510031/94‑1 (MQ=60)
                                                                  GAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACC                             <  SRR4302545.8872242/94‑1 (MQ=60)
                                                                   AATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCA                            <  SRR4302545.4421962/94‑1 (MQ=60)
                                                                   AATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCA                            >  SRR4302545.5865909/1‑94 (MQ=60)
                                                                   AATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCA                            >  SRR4302545.9672275/1‑94 (MQ=60)
                                                                    ATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAG                           >  SRR4302545.5108593/1‑94 (MQ=60)
                                                                    ATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAG                           <  SRR4302545.6447793/94‑1 (MQ=60)
                                                                    ATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAG                           <  SRR4302545.6447786/94‑1 (MQ=60)
                                                                     TGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGA                          >  SRR4302545.9100541/1‑94 (MQ=60)
                                                                     TGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGA                          <  SRR4302545.7895656/94‑1 (MQ=60)
                                                                     TGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGA                          <  SRR4302545.2438399/94‑1 (MQ=60)
                                                                     AGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGA                          <  SRR4302545.9374272/94‑1 (MQ=60)
                                                                      GCAAAGCCCGGGTTAATCCCCAGGCCTTGCATACCAGGCATATTCGGCAGACGGGTAGCAATACCGATCGACTGGAATATTGCCCGCACCAGAG                         <  SRR4302545.8738570/94‑1 (MQ=60)
                                                                       CAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGT                        <  SRR4302545.5276716/94‑1 (MQ=60)
                                                                        AAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTA                       <  SRR4302545.3942560/94‑1 (MQ=60)
                                                                        AAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTA                       <  SRR4302545.2320592/94‑1 (MQ=60)
                                                                         AAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTAC                      >  SRR4302545.4107952/1‑94 (MQ=60)
                                                                         AAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTAC                      <  SRR4302545.8399848/94‑1 (MQ=60)
                                                                         AAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTACCAGCACCAGAGGAC                      >  SRR4302545.7836219/1‑94 (MQ=60)
                                                                         AAGCCCGGGCTAAGCACCAGGCCTTGCATACCAGGAATATTCTGCAGACCGGGAGCAATACCaagcgactggcacattctcagctccagacaac                      >  SRR4302545.7474866/1‑62 (MQ=41)
                                                                          AGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACC                     <  SRR4302545.10794205/94‑1 (MQ=60)
                                                                          AGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACC                     <  SRR4302545.9205006/94‑1 (MQ=60)
                                                                          AGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACC                     <  SRR4302545.3858721/94‑1 (MQ=60)
                                                                           GCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGGGTACCG                    <  SRR4302545.10026621/94‑1 (MQ=60)
                                                                           GCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCG                    <  SRR4302545.913432/94‑1 (MQ=60)
                                                                             CCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTA                  >  SRR4302545.5486318/1‑94 (MQ=60)
                                                                             CCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTA                  <  SRR4302545.3428550/94‑1 (MQ=60)
                                                                             CCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTA                  <  SRR4302545.6774427/94‑1 (MQ=60)
                                                                              CGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAG                 >  SRR4302545.4728368/1‑94 (MQ=60)
                                                                              CGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAG                 <  SRR4302545.2531297/94‑1 (MQ=60)
                                                                              CGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAG                 >  SRR4302545.8754953/1‑94 (MQ=60)
                                                                               GGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGC                >  SRR4302545.3644971/1‑94 (MQ=60)
                                                                                GGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCG               <  SRR4302545.438572/94‑1 (MQ=60)
                                                                                GGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCG               <  SRR4302545.9611011/94‑1 (MQ=60)
                                                                                GGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCG               <  SRR4302545.4311258/94‑1 (MQ=60)
                                                                                GGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCG               <  SRR4302545.10017085/94‑1 (MQ=60)
                                                                                 GTTATTCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATCCCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGG              <  SRR4302545.1184856/94‑1 (MQ=60)
                                                                                 GTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGG              <  SRR4302545.729761/94‑1 (MQ=60)
                                                                                 GTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGG              <  SRR4302545.8627533/94‑1 (MQ=60)
                                                                                 GTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGG              <  SRR4302545.2443374/94‑1 (MQ=60)
                                                                                  TTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGG             <  SRR4302545.5486280/94‑1 (MQ=60)
                                                                                  TTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGG             >  SRR4302545.7165010/1‑94 (MQ=60)
                                                                                  TTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGG             <  SRR4302545.140650/94‑1 (MQ=60)
                                                                                    AATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTG           <  SRR4302545.2790838/94‑1 (MQ=60)
                                                                                     ATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGT          <  SRR4302545.3616344/94‑1 (MQ=60)
                                                                                       CACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTAC        >  SRR4302545.1318083/1‑94 (MQ=60)
                                                                                        ACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACT       >  SRR4302545.2897/1‑94 (MQ=60)
                                                                                        ACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACT       >  SRR4302545.6231859/1‑94 (MQ=60)
                                                                                        ACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACA       <  SRR4302545.10827411/94‑1 (MQ=60)
                                                                                         CCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTG      >  SRR4302545.10413145/1‑94 (MQ=60)
                                                                                          CAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGG     <  SRR4302545.10312123/94‑1 (MQ=60)
                                                                                          CAGACCTCGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGG     <  SRR4302545.7623409/94‑1 (MQ=60)
                                                                                           AGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGTATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGC    <  SRR4302545.6207214/94‑1 (MQ=60)
                                                                                           AGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGC    >  SRR4302545.4778514/1‑94 (MQ=60)
                                                                                           AGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGC    >  SRR4302545.2623442/1‑94 (MQ=60)
                                                                                             ACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGCTG  >  SRR4302545.6178317/1‑94 (MQ=60)
                                                                                             |                                                                                             
AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGCTG  >  NC_000913/3441201‑3441387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑