Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,441,294	G→A	G147G (GGC→GGT)	prlA ←	putative ATPase subunit of translocase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,441,294	0	G	A	100.0%	892.0 / NA	254	G147G (GGC→GGT)	prlA	putative ATPase subunit of translocase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (108/146); total (108/146)

Only 100 of 261 total aligned reads displayed.

CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTG  >  NC_000913/3441204‑3441383

cTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGAcc                                                                                         <  1:3790213/93‑1 (MQ=255)

 tGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCt                                                                                        <  1:2865633/93‑1 (MQ=255)

  gTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCtt                                                                                       <  1:5992427/93‑1 (MQ=255)

  gTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCtt                                                                                       >  1:4747096/1‑93 (MQ=255)

  gTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCtt                                                                                       >  2:2480029/1‑93 (MQ=255)

  gTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGACCGGGTTAATCACCAGACCtt                                                                                       >  2:5312377/1‑93 (MQ=255)

    tCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGc                                                                                     <  2:1962853/93‑1 (MQ=255)

     cGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCa                                                                                    <  1:89827/93‑1 (MQ=255)

      gCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAt                                                                                   <  1:2749537/93‑1 (MQ=255)

       cccAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATa                                                                                  >  2:2998384/1‑93 (MQ=255)

       cccAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATa                                                                                  <  2:1508236/93‑1 (MQ=255)

       cccAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCACGGGTTAATCACCAGACCTTGCATa                                                                                  >  2:6055473/1‑93 (MQ=255)

        ccAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATAc                                                                                 >  1:5794360/1‑93 (MQ=255)

          aaCCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCa                                                                               <  2:1189914/93‑1 (MQ=255)

           aCCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAg                                                                              >  1:4067342/1‑93 (MQ=255)

           aCCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAg                                                                              <  2:653773/93‑1 (MQ=255)

           aCCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAg                                                                              <  2:4843043/93‑1 (MQ=255)

            ccACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAgg                                                                             <  2:1781299/93‑1 (MQ=255)

                aTCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCata                                                                         <  2:3730910/93‑1 (MQ=255)

                 tCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCatat                                                                        >  1:5297696/1‑93 (MQ=255)

                 tCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCatat                                                                        <  1:657780/93‑1 (MQ=255)

                 tCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCatat                                                                        >  2:1230381/1‑93 (MQ=255)

                 tCAGGAACATGGATCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGATCTTGCATACCAGGCatat                                                                        >  2:343413/1‑93 (MQ=255)

                  cAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATAtt                                                                       <  1:1499144/93‑1 (MQ=255)

                   aGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTc                                                                      >  2:4174359/1‑93 (MQ=255)

                      aaCATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGc                                                                   <  2:5934625/93‑1 (MQ=255)

                       aCATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCa                                                                  >  1:2349378/1‑93 (MQ=255)

                       aCATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCa                                                                  <  2:684563/93‑1 (MQ=255)

                       aCATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCa                                                                  >  2:1426657/1‑93 (MQ=255)

                         aTGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGa                                                                <  1:68664/93‑1 (MQ=255)

                          tGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGAc                                                               <  1:6089952/93‑1 (MQ=255)

                           ggTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGAcc                                                              >  2:256104/1‑93 (MQ=255)

                           ggTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGAcc                                                              <  2:3984550/93‑1 (MQ=255)

                            gTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCg                                                             >  1:1670843/1‑93 (MQ=255)

                            gTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCg                                                             <  2:910464/93‑1 (MQ=255)

                               ccTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTa                                                          <  2:1576108/93‑1 (MQ=255)

                               ccTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTa                                                          >  2:3527182/1‑93 (MQ=255)

                                    gACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAt                                                     >  1:3434091/1‑93 (MQ=255)

                                    gACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAt                                                     >  1:4109761/1‑93 (MQ=255)

                                    gACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAt                                                     <  2:4460553/93‑1 (MQ=255)

                                    gACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGCAGCAAt                                                     >  1:3062859/1‑93 (MQ=255)

                                     aCCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATa                                                    <  1:247603/93‑1 (MQ=255)

                                     aCCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATa                                                    <  2:6297218/93‑1 (MQ=255)

                                     aCCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATa                                                    <  1:1985557/93‑1 (MQ=255)

                                        aGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCg                                                 <  2:382410/93‑1 (MQ=255)

                                         gACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGa                                                <  2:1349224/93‑1 (MQ=255)

                                         gACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGa                                                <  1:5178719/93‑1 (MQ=255)

                                          aCTTACAACAGCGGTGAAGTAGAATGCAAAGCCAGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGAt                                               <  1:2147743/93‑1 (MQ=255)

                                              acaacaGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGAc                                           <  1:4252826/93‑1 (MQ=255)

                                                aacaGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTg                                         <  1:4564782/93‑1 (MQ=255)

                                                aacaGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTg                                         <  2:2643157/93‑1 (MQ=255)

                                                aacaGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTg                                         <  1:3160286/93‑1 (MQ=255)

                                                 acaGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTgg                                        <  1:1110575/93‑1 (MQ=255)

                                                 acaGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTgg                                        <  1:4891188/93‑1 (MQ=255)

                                                 acaGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTgg                                        >  1:360291/1‑93 (MQ=255)

                                                  caGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGa                                       <  1:5008977/93‑1 (MQ=255)

                                                    gCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAat                                     >  2:4072337/1‑93 (MQ=255)

                                                    gCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAat                                     <  1:4162633/93‑1 (MQ=255)

                                                    gCGGTGAAGTAGAATGCAAAGCCCGCGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATGCCGATCGACTGGAat                                     <  2:1834778/93‑1 (MQ=255)

                                                      ggTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAatat                                   >  1:811422/1‑93 (MQ=255)

                                                       gTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATAtt                                  <  1:1229362/93‑1 (MQ=255)

                                                       gTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATAtt                                  >  1:1519950/1‑93 (MQ=255)

                                                        tGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTg                                 <  2:5386723/93‑1 (MQ=255)

                                                        tGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTg                                 >  2:4101291/1‑93 (MQ=255)

                                                         gAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGc                                >  2:5016880/1‑93 (MQ=255)

                                                         gAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGc                                >  2:1051726/1‑93 (MQ=255)

                                                           aGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCa                              >  2:561559/1‑93 (MQ=255)

                                                           aGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCa                              <  2:6124447/93‑1 (MQ=255)

                                                           aGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCa                              <  1:1683021/93‑1 (MQ=255)

                                                           aGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGAAATACCGATCGACTGGAATATTGCCa                              >  1:2113461/1‑93 (MQ=255)

                                                            gTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAg                             >  2:1133184/1‑93 (MQ=255)

                                                               gAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCAc                          >  2:3676949/1‑93 (MQ=255)

                                                               gAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCAc                          >  1:2466285/1‑93 (MQ=255)

                                                               gAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCAc                          >  2:1927889/1‑93 (MQ=255)

                                                               gAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCAc                          >  2:286373/1‑93 (MQ=255)

                                                               gAATGCAAAAACCGGGGTAATCACCAGACCTTTCATAACAGGCATATTCGGCAGACCCGTAGCAATAACGCTCGACTGGAATATTTTCAGCAc                          >  2:1703366/1‑93 (MQ=255)

                                                                   gCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCaga                      <  1:5671887/93‑1 (MQ=255)

                                                                   gCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCaga                      <  1:2988512/93‑1 (MQ=255)

                                                                    cAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCagag                     <  1:972404/93‑1 (MQ=255)

                                                                      aaGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTa                   >  2:2424535/1‑93 (MQ=255)

                                                                      aaGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTa                   <  2:6180814/93‑1 (MQ=255)

                                                                      aaGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTa                   >  1:4646985/1‑93 (MQ=255)

                                                                       aGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGCCCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTAc                  <  1:5880489/93‑1 (MQ=255)

                                                                        gCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATAGACTGGAATATTGCCAGCACCAGAGTAcc                 >  2:6358549/1‑93 (MQ=255)

                                                                         cccGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCg                >  2:2675439/1‑93 (MQ=255)

                                                                         cccGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCg                >  1:4431951/1‑93 (MQ=255)

                                                                          ccGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGt               <  1:3912767/93‑1 (MQ=255)

                                                                          ccGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGt               >  2:2183945/1‑93 (MQ=255)

                                                                           cGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTa              <  1:3271665/93‑1 (MQ=255)

                                                                            gggTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAg             >  1:1386511/1‑93 (MQ=255)

                                                                            gggTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAg             <  2:1775769/93‑1 (MQ=255)

                                                                              gTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCg           <  2:4600504/93‑1 (MQ=255)

                                                                               ttAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCgg          <  2:3219307/93‑1 (MQ=255)

                                                                               ttAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGGACCGTAGCgg          >  1:282462/1‑93 (MQ=255)

                                                                                 aaTCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGgt        <  1:2058253/93‑1 (MQ=255)

                                                                                  aTCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGgtg       >  1:5552602/1‑93 (MQ=255)

                                                                                     aCCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTAc    <  2:4889333/93‑1 (MQ=255)

                                                                                     aCCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTAc    >  1:6221527/1‑93 (MQ=255)

                                                                                      ccAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACt   <  2:5857385/93‑1 (MQ=255)

                                                                                       cAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTg  <  2:2839187/93‑1 (MQ=255)

CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTG  >  NC_000913/3441204‑3441383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGCT  >  NC_000913/3441201‑3441386

AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGA                                                                                              >  SRR4302537.5080138/1‑94 (MQ=60)

AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGA                                                                                              <  SRR4302537.3203027/94‑1 (MQ=60)

   CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCT                                                                                           <  SRR4302537.3816815/94‑1 (MQ=60)

   CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCT                                                                                           >  SRR4302537.3115450/1‑94 (MQ=60)

   CTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCT                                                                                           <  SRR4302537.3287705/94‑1 (MQ=60)

    TGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTT                                                                                          <  SRR4302537.2885730/94‑1 (MQ=60)

    TGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTT                                                                                          <  SRR4302537.2125104/94‑1 (MQ=60)

    TGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTT                                                                                          >  SRR4302537.4779892/1‑94 (MQ=60)

    TGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTT                                                                                          >  SRR4302537.4179520/1‑94 (MQ=60)

     GTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTG                                                                                         <  SRR4302537.1366068/94‑1 (MQ=60)

     GTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTG                                                                                         <  SRR4302537.6033583/94‑1 (MQ=60)

        CGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAT                                                                                      <  SRR4302537.4404438/94‑1 (MQ=60)

        CGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAT                                                                                      <  SRR4302537.4505442/94‑1 (MQ=60)

        CGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAT                                                                                      >  SRR4302537.4987132/1‑94 (MQ=60)

        CGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAT                                                                                      <  SRR4302537.2207943/94‑1 (MQ=60)

        CGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCAT                                                                                      <  SRR4302537.90483/94‑1 (MQ=60)

         GCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATA                                                                                     <  SRR4302537.2768718/94‑1 (MQ=60)

          CCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATAC                                                                                    >  SRR4302537.4671465/1‑94 (MQ=60)

          CCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATAC                                                                                    >  SRR4302537.5834081/1‑94 (MQ=60)

          CCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATAC                                                                                    >  SRR4302537.6207852/1‑94 (MQ=60)

          CCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATAC                                                                                    <  SRR4302537.959007/94‑1 (MQ=60)

           CCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACA                                                                                   >  SRR4302537.3902032/1‑94 (MQ=60)

           CCAACCACATCAGGAACATGGTTCCTGTGACCAAACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACC                                                                                   >  SRR4302537.2160249/1‑94 (MQ=60)

            CAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCA                                                                                  >  SRR4302537.1402678/1‑94 (MQ=60)

             AACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAG                                                                                 >  SRR4302537.4095757/1‑94 (MQ=60)

              ACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGG                                                                                >  SRR4302537.6084839/1‑94 (MQ=60)

               CCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGC                                                                               <  SRR4302537.4175981/94‑1 (MQ=60)

                CACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCA                                                                              >  SRR4302537.783509/1‑94 (MQ=60)

                CACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCA                                                                              <  SRR4302537.282656/94‑1 (MQ=60)

                 ACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCAT                                                                             <  SRR4302537.583657/94‑1 (MQ=60)

                   ATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATAT                                                                           >  SRR4302537.5334087/1‑94 (MQ=60)

                   ATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATAT                                                                           <  SRR4302537.5841743/94‑1 (MQ=60)

                   ATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATAT                                                                           <  SRR4302537.2710400/94‑1 (MQ=60)

                    TCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATT                                                                          <  SRR4302537.6136006/94‑1 (MQ=60)

                    TCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATT                                                                          <  SRR4302537.662262/94‑1 (MQ=60)

                     CAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTC                                                                         <  SRR4302537.1509605/94‑1 (MQ=60)

                       GGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGG                                                                       <  SRR4302537.4503729/94‑1 (MQ=60)

                       GGAACATGGTTCCTGTGAACAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGG                                                                       <  SRR4302537.5956959/94‑1 (MQ=60)

                        GAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGC                                                                      <  SRR4302537.4210678/94‑1 (MQ=60)

                         AACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCA                                                                     >  SRR4302537.2365921/1‑94 (MQ=60)

                          ACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAG                                                                    <  SRR4302537.3201996/94‑1 (MQ=60)

                           CATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGA                                                                   >  SRR4302537.1152455/1‑94 (MQ=60)

                            ATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGAC                                                                  >  SRR4302537.3038610/1‑94 (MQ=60)

                            ATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGAC                                                                  <  SRR4302537.69167/94‑1 (MQ=60)

                            ATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGAC                                                                  >  SRR4302537.5082747/1‑94 (MQ=60)

                             TGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACC                                                                 <  SRR4302537.6131792/94‑1 (MQ=60)

                              GGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCG                                                                <  SRR4302537.5974844/94‑1 (MQ=60)

                              GGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCG                                                                >  SRR4302537.1682545/1‑94 (MQ=60)

                               GTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGG                                                               <  SRR4302537.4745815/94‑1 (MQ=60)

                                TTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGT                                                              <  SRR4302537.2809811/94‑1 (MQ=60)

                                 TCCTGTGCCCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTA                                                             <  SRR4302537.5446644/94‑1 (MQ=60)

                                    TGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCGCCAGACCTGGCATACCAGGCATATTCGGCAGACCGGTAGCA                                                          <  SRR4302537.2965781/94‑1 (MQ=60)

                                      TGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAT                                                        >  SRR4302537.3458398/1‑94 (MQ=60)

                                      TGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAT                                                        >  SRR4302537.4138473/1‑94 (MQ=60)

                                      TGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAAT                                                        <  SRR4302537.2878029/94‑1 (MQ=60)

                                      TGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGCAGCAAT                                                        >  SRR4302537.3084201/1‑94 (MQ=60)

                                       GACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATA                                                       <  SRR4302537.5673057/94‑1 (MQ=60)

                                       GACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATA                                                       <  SRR4302537.4782742/94‑1 (MQ=60)

                                        ACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATAC                                                      >  SRR4302537.3523234/1‑94 (MQ=60)

                                        ACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATAC                                                      <  SRR4302537.249363/94‑1 (MQ=60)

                                        ACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATAC                                                      >  SRR4302537.2383323/1‑94 (MQ=60)

                                        ACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATAC                                                      <  SRR4302537.1999353/94‑1 (MQ=60)

                                         CCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACC                                                     <  SRR4302537.673748/94‑1 (MQ=60)

                                          CAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCG                                                    >  SRR4302537.168525/1‑94 (MQ=60)

                                          CAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCG                                                    <  SRR4302537.5564267/94‑1 (MQ=60)

                                            GACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGAT                                                  <  SRR4302537.5214359/94‑1 (MQ=60)

                                             ACTTACAACAGCGGTGAAGTAGAATGCAAAGCCAGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATC                                                 <  SRR4302537.2162851/94‑1 (MQ=60)

                                                 ACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACT                                             <  SRR4302537.4282384/94‑1 (MQ=60)

                                                   AACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGG                                           >  SRR4302537.362794/1‑94 (MQ=60)

                                                   AACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGG                                           <  SRR4302537.740961/94‑1 (MQ=60)

                                                   AACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGG                                           <  SRR4302537.3182470/94‑1 (MQ=60)

                                                   AACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGG                                           <  SRR4302537.1534513/94‑1 (MQ=60)

                                                   AACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGG                                           <  SRR4302537.4596380/94‑1 (MQ=60)

                                                   AACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGG                                           <  SRR4302537.5278857/94‑1 (MQ=60)

                                                    ACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGA                                          <  SRR4302537.4924962/94‑1 (MQ=60)

                                                    ACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGA                                          <  SRR4302537.1118246/94‑1 (MQ=60)

                                                     CAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAA                                         <  SRR4302537.5043483/94‑1 (MQ=60)

                                                      AGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAAT                                        >  SRR4302537.399711/1‑94 (MQ=60)

                                                      AGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAAT                                        >  SRR4302537.363595/1‑94 (MQ=60)

                                                      AGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAAT                                        <  SRR4302537.1525085/94‑1 (MQ=60)

                                                       GCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATA                                       <  SRR4302537.4191705/94‑1 (MQ=60)

                                                       GCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATA                                       >  SRR4302537.1555012/1‑94 (MQ=60)

                                                        CGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATAT                                      <  SRR4302537.1328256/94‑1 (MQ=60)

                                                        CGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATAT                                      >  SRR4302537.4763126/1‑94 (MQ=60)

                                                        CGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATAT                                      >  SRR4302537.816984/1‑94 (MQ=60)

                                                         GGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATT                                     >  SRR4302537.1530569/1‑94 (MQ=60)

                                                         GGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATT                                     >  SRR4302537.2491082/1‑94 (MQ=60)

                                                          GTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTG                                    <  SRR4302537.667988/94‑1 (MQ=60)

                                                          GTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTG                                    <  SRR4302537.1237911/94‑1 (MQ=60)

                                                           TGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGC                                   >  SRR4302537.191245/1‑94 (MQ=60)

                                                           TGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGC                                   >  SRR4302537.977266/1‑94 (MQ=60)

                                                             AAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCA                                 <  SRR4302537.396643/94‑1 (MQ=60)

                                                             AAGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGAAATACCGATCGACTGGAATATTGCCA                                 >  SRR4302537.2128354/1‑94 (MQ=60)

                                                              AGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAG                                <  SRR4302537.1694802/94‑1 (MQ=60)

                                                              AGTAGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAG                                >  SRR4302537.5749530/1‑94 (MQ=60)

                                                                 AGAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCAC                             >  SRR4302537.2483627/1‑94 (MQ=60)

                                                                  GAATGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTCGAATATTGCCAGCACC                            >  SRR4302537.4820749/1‑94 (MQ=60)

                                                                     TGCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGA                         >  SRR4302537.3432254/1‑94 (MQ=60)

                                                                      GCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAG                        <  SRR4302537.3009384/94‑1 (MQ=60)

                                                                      GCAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAG                        <  SRR4302537.5710696/94‑1 (MQ=60)

                                                                       CAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGT                       <  SRR4302537.979109/94‑1 (MQ=60)

                                                                       CAAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGT                       >  SRR4302537.2649746/1‑94 (MQ=60)

                                                                        AAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATCCCGATCGACT‑GAATATTGCCAGCACCAGAGTAC                     <  SRR4302537.567368/94‑1 (MQ=60)

                                                                        AAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTA                      >  SRR4302537.4679115/1‑94 (MQ=60)

                                                                        AAAGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTA                      >  SRR4302537.3085199/1‑94 (MQ=60)

                                                                          AGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGCCCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACC                    <  SRR4302537.5920833/94‑1 (MQ=60)

                                                                          AGCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACC                    <  SRR4302537.6386834/94‑1 (MQ=60)

                                                                           GCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCG                   >  SRR4302537.4462556/1‑94 (MQ=60)

                                                                           GCCCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCG                   <  SRR4302537.3001361/94‑1 (MQ=60)

                                                                             CCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTA                 <  SRR4302537.859348/94‑1 (MQ=60)

                                                                             CCGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTA                 <  SRR4302537.3940123/94‑1 (MQ=60)

                                                                              CGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAG                >  SRR4302537.1396179/1‑94 (MQ=60)

                                                                              CGGGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAG                <  SRR4302537.3294755/94‑1 (MQ=60)

                                                                                GGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCG              >  SRR4302537.2141027/1‑94 (MQ=60)

                                                                                GGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCG              <  SRR4302537.1526471/94‑1 (MQ=60)

                                                                                GGTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCG              <  SRR4302537.5060391/94‑1 (MQ=60)

                                                                                 GTTAATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGGACCGTAGCGG             >  SRR4302537.284429/1‑94 (MQ=60)

                                                                                    AATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTG          >  SRR4302537.5590517/1‑94 (MQ=60)

                                                                                    AATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTG          <  SRR4302537.2072704/94‑1 (MQ=60)

                                                                                     ATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGT         >  SRR4302537.1746493/1‑94 (MQ=60)

                                                                                     ATCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGT         <  SRR4302537.4209921/94‑1 (MQ=60)

                                                                                      TCACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTA        <  SRR4302537.2391543/94‑1 (MQ=60)

                                                                                       CACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTAC       >  SRR4302537.6264354/1‑94 (MQ=60)

                                                                                       CACCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTAC       >  SRR4302537.3764703/1‑94 (MQ=60)

                                                                                         CCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTG     >  SRR4302537.2046486/1‑94 (MQ=60)

                                                                                         CCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTG     >  SRR4302537.2093471/1‑94 (MQ=60)

                                                                                         CCAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTG     >  SRR4302537.4104136/1‑94 (MQ=60)

                                                                                          CAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGG    <  SRR4302537.3514935/94‑1 (MQ=60)

                                                                                          CAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGG    >  SRR4302537.558485/1‑94 (MQ=60)

                                                                                          CAGACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCCGGTGTACTGG    >  SRR4302537.5572481/1‑94 (MQ=60)

                                                                                            GACCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGCT  <  SRR4302537.534141/94‑1 (MQ=60)

AATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATTCGGCAGACCGGTAGCAATACCGATCGACTGGAATATTGCCAGCACCAGAGTACCGTAGCGGGTGTACTGGCT  >  NC_000913/3441201‑3441386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`