Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,787,205 (C)5→6 coding (504/1035 nt) yibD ← putative regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,787,2001.C96.5% 2003.1 / 49.2 596coding (509/1035 nt)yibDputative regulator
Reads supporting (aligned to +/- strand):  ref base . (12/9);  new base C (360/214);  total (373/223)
Fisher's exact test for biased strand distribution p-value = 6.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 670 total aligned reads displayed.

TTAAACATGAATTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑CC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAG  >  NC_000913/3787107‑3787288
                                                                                                |                                                                                         
ttAAACATGAATTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑aa‑a                                                                                            <  1:4725565/94‑1 (MQ=255)
 tAAACATGAATTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑c                                                                                          <  1:32372/94‑1 (MQ=255)
  aaaCATGAATTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑cc                                                                                         >  1:10028258/1‑94 (MQ=255)
    aCATGAATTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑cc‑cc                                                                                      >  2:8420267/1‑94 (MQ=255)
        gAATTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑cc‑ccccat                                                                                  <  2:5959599/94‑4 (MQ=255)
         aaTTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑cc‑ccccatc                                                                                 <  1:3467371/94‑5 (MQ=255)
            tCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAg                                                                               <  2:10000082/94‑1 (MQ=255)
            tCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAg                                                                               <  2:6196665/94‑1 (MQ=255)
              tgttgtCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGATAAA‑A‑CC‑CCCATCCAGAc                                                                             >  1:5327266/1‑94 (MQ=255)
              tgttgtCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGAc                                                                             >  2:2757171/1‑94 (MQ=255)
               gttgtCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑CCACCCATCCAGACa                                                                            >  1:10322475/1‑94 (MQ=255)
                 tgtCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAAc                                                                          <  1:286154/94‑1 (MQ=255)
                 tgtCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAAc                                                                          <  1:8892911/94‑1 (MQ=255)
                  gtCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACg                                                                         <  2:10596098/94‑1 (MQ=255)
                  gtCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACg                                                                         >  2:8606616/1‑94 (MQ=255)
                   tCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGt                                                                        <  1:9682632/94‑1 (MQ=255)
                     cAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGa                                                                      >  2:7128354/1‑94 (MQ=255)
                     cAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGa                                                                      >  1:8245412/1‑94 (MQ=255)
                      aGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAg                                                                     <  1:8763687/94‑1 (MQ=255)
                       gACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGt                                                                    <  2:10163076/94‑1 (MQ=255)
                        aCAATATCCTGATGATGTAATCCGGGAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTc                                                                   >  1:10149721/1‑94 (MQ=255)
                        aCAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTc                                                                   >  2:8074235/1‑94 (MQ=255)
                        aCAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTc                                                                   >  1:6110568/1‑94 (MQ=255)
                          aaTATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCa                                                                 >  1:9819432/1‑94 (MQ=255)
                          aaTATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCa                                                                 >  2:8866580/1‑94 (MQ=255)
                           atatCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCaa                                                                >  2:3194980/1‑94 (MQ=255)
                            tatCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAAc                                                               <  2:9807806/94‑1 (MQ=255)
                             atCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACg                                                              <  2:644745/94‑1 (MQ=255)
                               ccTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGgc                                                            >  2:4967212/1‑94 (MQ=255)
                                cTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGgcg                                                           >  1:1546539/1‑94 (MQ=255)
                                cTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGgcg                                                           >  2:2405786/1‑94 (MQ=255)
                                  gatgatGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGcgcg                                                         <  1:1254389/94‑1 (MQ=255)
                                  gatgatGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGcgcg                                                         <  2:7291444/94‑1 (MQ=255)
                                  gatgatGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGcgcg                                                         >  1:4209696/1‑94 (MQ=255)
                                      atgTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCgaaga                                                     >  1:8682699/1‑94 (MQ=255)
                                       tgTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCgaagaa                                                    <  1:1353476/94‑1 (MQ=255)
                                       tgTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCgaagaa                                                    <  2:7675430/94‑1 (MQ=255)
                                           aTCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGcc                                                >  2:2976035/1‑94 (MQ=255)
                                            tCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGccc                                               >  2:2287300/1‑94 (MQ=255)
                                             ccGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGcacc                                              >  2:1029174/1‑94 (MQ=255)
                                              cGGCAATAAATTTAATGTTATTTTTTACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCa                                             <  2:5515826/94‑1 (MQ=255)
                                              cGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCa                                             >  1:1983213/1‑94 (MQ=255)
                                              cGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCa                                             >  1:5793855/1‑94 (MQ=255)
                                                 cAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATcc                                          <  2:3581086/94‑1 (MQ=255)
                                                  aaTAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCg                                         >  2:4806852/1‑94 (MQ=255)
                                                   aTAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGc                                        >  1:7503563/1‑94 (MQ=255)
                                                      aaTTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGc                                     >  1:7712145/1‑94 (MQ=255)
                                                       aTTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGcc                                    >  1:8372872/1‑94 (MQ=255)
                                                       aTTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGcc                                    >  2:827998/1‑94 (MQ=255)
                                                       aTTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGcc                                    >  2:1948558/1‑94 (MQ=255)
                                                         ttAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAg                                  >  1:10545934/1‑94 (MQ=255)
                                                         ttAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAg                                  >  1:4884187/1‑94 (MQ=255)
                                                          tAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCGCCATCCGCAGCCAGt                                 >  2:203267/1‑94 (MQ=255)
                                                           aaTGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTc                                >  2:6617942/1‑94 (MQ=255)
                                                           aaTGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTc                                >  1:3014298/1‑94 (MQ=255)
                                                            aTGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTcc                               <  2:6770722/94‑1 (MQ=255)
                                                            aTGTTATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTcc                               >  2:4282761/1‑94 (MQ=255)
                                                               ttATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCggg                            <  2:5259922/94‑1 (MQ=255)
                                                                tATTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGc                           <  1:1692659/94‑1 (MQ=255)
                                                                 aTTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGcc                          >  1:6010061/1‑94 (MQ=255)
                                                                 aTTTTTAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGcc                          <  2:3364361/94‑1 (MQ=255)
                                                                  tttttAACAATAACATCACGGCGATAAA‑A‑CC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCg                         >  1:6353993/1‑94 (MQ=255)
                                                                  tttttAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCg                         >  1:7129575/1‑94 (MQ=255)
                                                                   ttttAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCgg                        >  2:4708306/1‑94 (MQ=255)
                                                                    tttAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCGGGCCCgta                       >  2:8944877/1‑92 (MQ=255)
                                                                    tttAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGt                       >  1:449124/1‑94 (MQ=255)
                                                                    tttAACAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGt                       >  1:6650517/1‑94 (MQ=255)
                                                                        aCAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAAt                   >  1:5408249/1‑94 (MQ=255)
                                                                        aCAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAAt                   >  1:8517547/1‑94 (MQ=255)
                                                                         cAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCGGCAGCCAGTCCGGGCCGGTTAATa                  >  2:4601917/1‑94 (MQ=255)
                                                                         cAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATa                  >  1:5564578/1‑94 (MQ=255)
                                                                         cAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATa                  >  1:515753/1‑94 (MQ=255)
                                                                         cAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATa                  >  2:7554755/1‑94 (MQ=255)
                                                                         cAATAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATa                  >  2:10487463/1‑94 (MQ=255)
                                                                          aaTAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATAc                 <  2:4007545/94‑1 (MQ=255)
                                                                           aTAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACg                >  1:1468647/1‑94 (MQ=255)
                                                                            tAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGc               <  1:500880/94‑1 (MQ=255)
                                                                            tAACATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGc               >  1:2081930/1‑94 (MQ=255)
                                                                            tAACATCACGGCGAC‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGc               >  2:9318496/1‑94 (MQ=255)
                                                                             aaCATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGcc              >  1:3356494/1‑94 (MQ=255)
                                                                              aCATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTTCAACGGCGCGAAGAAAGCACCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCg             >  2:1705135/1‑94 (MQ=255)
                                                                              aCATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCg             >  2:9558531/1‑94 (MQ=255)
                                                                              aCATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCg             <  2:7879002/94‑1 (MQ=255)
                                                                              aCATCACGGCGAT‑AA‑A‑CC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCgg            <  1:9009173/94‑1 (MQ=255)
                                                                               cATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCgg            >  2:144570/1‑94 (MQ=255)
                                                                               cATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCgg            >  1:6971259/1‑94 (MQ=255)
                                                                               cATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCgg            >  1:9368744/1‑94 (MQ=255)
                                                                               cATCACGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCgg            >  2:9424861/1‑94 (MQ=255)
                                                                                   aCGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGa        >  2:1092764/1‑94 (MQ=255)
                                                                                   aCGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGa        <  1:2508936/94‑1 (MQ=255)
                                                                                   aCGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGa        >  2:4442523/1‑94 (MQ=255)
                                                                                   aCGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGa        <  1:9172733/94‑1 (MQ=255)
                                                                                   aCGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGa        <  1:7785635/94‑1 (MQ=255)
                                                                                   aCGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTGAATACGCCGGTTGa        >  2:9153849/1‑94 (MQ=255)
                                                                                    cGGCGAT‑AATC‑CC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAg       <  1:2741065/94‑1 (MQ=255)
                                                                                    cGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAg       >  2:1589056/1‑94 (MQ=255)
                                                                                    cGGCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAg       >  1:3765500/1‑94 (MQ=255)
                                                                                     ggCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGc      <  2:5122318/94‑1 (MQ=255)
                                                                                      gCGAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCg     <  1:2282537/94‑1 (MQ=255)
                                                                                        gAT‑AA‑ACCC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGaa   >  1:7919822/1‑94 (MQ=255)
                                                                                                |                                                                                         
TTAAACATGAATTCTGTTGTCCAGACAATATCCTGATGATGTAATCCGGCAATAAATTTAATGTTATTTTTAACAATAACATCACGGCGAT‑AA‑A‑CC‑CCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAG  >  NC_000913/3787107‑3787288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 395 total aligned reads displayed.
ATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCG  >  NC_000913/3790910‑3791096
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ATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CC                                                                                               <  SRR4302545.7821009/94‑1 (MQ=60)
ATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CC                                                                                               >  SRR4302545.5281593/1‑94 (MQ=60)
 TGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCC                                                                                              <  SRR4302545.4395625/94‑1 (MQ=60)
 TGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCC                                                                                              <  SRR4302545.5603762/94‑1 (MQ=60)
  GTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCA                                                                                             >  SRR4302545.10585934/1‑94 (MQ=60)
    TGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAG                                                                                           <  SRR4302545.3553009/94‑1 (MQ=60)
    TGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAG                                                                                           >  SRR4302545.8801207/1‑94 (MQ=60)
    TGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAG                                                                                           <  SRR4302545.7964268/94‑1 (MQ=60)
    TGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAG                                                                                           >  SRR4302545.461995/1‑94 (MQ=60)
     GATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGT                                                                                          <  SRR4302545.10062181/94‑1 (MQ=60)
      ATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTC                                                                                         >  SRR4302545.610386/1‑94 (MQ=60)
      ATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTC                                                                                         >  SRR4302545.1188813/1‑94 (MQ=60)
        AGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTA                                                                                       <  SRR4302545.5227797/94‑1 (MQ=60)
         GCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTAT                                                                                      <  SRR4302545.5975789/94‑1 (MQ=60)
         GCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTAT                                                                                      >  SRR4302545.10616264/1‑94 (MQ=60)
          CTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGCTTTTTAATTGTCGAGG‑CCCAAGTCTATT                                                                                     >  SRR4302545.10620138/1‑94 (MQ=60)
           TTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTT                                                                                    >  SRR4302545.7461475/1‑94 (MQ=60)
           TTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTT                                                                                    <  SRR4302545.7811551/94‑1 (MQ=60)
           TTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTT                                                                                    <  SRR4302545.1895560/94‑1 (MQ=60)
           TTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTT                                                                                    >  SRR4302545.1458776/1‑94 (MQ=60)
            TTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTG                                                                                   >  SRR4302545.6708513/1‑94 (MQ=60)
            TTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTG                                                                                   <  SRR4302545.848087/94‑1 (MQ=60)
            TTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTG                                                                                   <  SRR4302545.4290512/94‑1 (MQ=60)
             TATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGT                                                                                  <  SRR4302545.892190/94‑1 (MQ=60)
             TATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGT                                                                                  >  SRR4302545.2973661/1‑94 (MQ=60)
             TATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGT                                                                                  <  SRR4302545.1327444/94‑1 (MQ=60)
              ATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTA                                                                                 <  SRR4302545.3826446/94‑1 (MQ=60)
               TTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAA                                                                                >  SRR4302545.661710/1‑94 (MQ=60)
                TTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAA                                                                               <  SRR4302545.4176061/94‑1 (MQ=60)
                 TACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAAC                                                                              <  SRR4302545.6519042/94‑1 (MQ=60)
                 TACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAAC                                                                              <  SRR4302545.3601798/94‑1 (MQ=60)
                 TACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAAC                                                                              <  SRR4302545.8885717/94‑1 (MQ=60)
                 TACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAAC                                                                              <  SRR4302545.7498986/94‑1 (MQ=60)
                 TACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAAC                                                                              <  SRR4302545.1256831/94‑1 (MQ=60)
                  ACAAAAAAGGCCTTAAGGTCACATACCAAAACATGCTCTGGTGACCAGTACTCGGGGTTTTTTAATTGTCGAGG‑CTCAAGTCTATTTGTAAACG                                                                             <  SRR4302545.5453616/94‑1 (MQ=60)
                   CAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGA                                                                            >  SRR4302545.7933400/1‑94 (MQ=60)
                    AAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTGCTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGAC                                                                           <  SRR4302545.2714833/94‑1 (MQ=60)
                    AAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGAC                                                                           <  SRR4302545.3757740/94‑1 (MQ=60)
                    AAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGAC                                                                           <  SRR4302545.8489636/94‑1 (MQ=60)
                    AAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGAC                                                                           >  SRR4302545.7134212/1‑94 (MQ=60)
                      AATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTC                                                                         <  SRR4302545.10784957/94‑1 (MQ=60)
                      AATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTC                                                                         >  SRR4302545.1051111/1‑94 (MQ=60)
                      AATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTC                                                                         <  SRR4302545.2440438/94‑1 (MQ=60)
                       ATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCA                                                                        <  SRR4302545.6330965/94‑1 (MQ=60)
                       ATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCA                                                                        <  SRR4302545.2589989/94‑1 (MQ=60)
                        TAGGCCTTAAGCTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAAAGACTCAT                                                                       <  SRR4302545.7168658/94‑1 (MQ=60)
                        AAGGCCTTAAGGTTACATACCAAAACATTCTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCAT                                                                       <  SRR4302545.7008022/94‑1 (MQ=60)
                         AGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATC                                                                      <  SRR4302545.6315466/94‑1 (MQ=60)
                         AGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATC                                                                      <  SRR4302545.8829597/94‑1 (MQ=60)
                         AGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATC                                                                      >  SRR4302545.8738048/1‑94 (MQ=60)
                          GGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCT                                                                     <  SRR4302545.2769047/94‑1 (MQ=60)
                          GGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCT                                                                     <  SRR4302545.1943228/94‑1 (MQ=60)
                           GCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTT                                                                    <  SRR4302545.9665458/94‑1 (MQ=60)
                            CCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTT                                                                   <  SRR4302545.4358463/94‑1 (MQ=60)
                            CCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTT                                                                   <  SRR4302545.1638472/94‑1 (MQ=60)
                             CTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTT                                                                  >  SRR4302545.9379769/1‑94 (MQ=60)
                             CTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTT                                                                  >  SRR4302545.4900251/1‑94 (MQ=60)
                             CTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTT                                                                  >  SRR4302545.2055303/1‑94 (MQ=60)
                             CTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTT                                                                  >  SRR4302545.2118310/1‑94 (MQ=60)
                             CTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTT                                                                  >  SRR4302545.10150892/1‑94 (MQ=60)
                              TTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTT                                                                 >  SRR4302545.8737725/1‑94 (MQ=60)
                               TAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTG                                                                <  SRR4302545.53827/94‑1 (MQ=60)
                                AAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGA                                                               <  SRR4302545.1191433/94‑1 (MQ=60)
                                AAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGA                                                               >  SRR4302545.7518603/1‑94 (MQ=60)
                                 AGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAA                                                              >  SRR4302545.9899339/1‑94 (MQ=60)
                                 AGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAA                                                              <  SRR4302545.7618306/94‑1 (MQ=60)
                                  GGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAAT                                                             >  SRR4302545.5326267/1‑94 (MQ=60)
                                   gtaaaATACCAAAACATGTTCTGGTGACCAGTTCTCTGGTTTTTTTAATTGTCGAGC‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATT                                                            <  SRR4302545.5926578/89‑1 (MQ=60)
                                   GTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATT                                                            <  SRR4302545.729452/94‑1 (MQ=60)
                                   GTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATT                                                            >  SRR4302545.8805434/1‑94 (MQ=60)
                                    TTACATACCAAAACATGCTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTT                                                           <  SRR4302545.9128341/94‑1 (MQ=60)
                                    TTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTT                                                           >  SRR4302545.9168036/1‑94 (MQ=60)
                                    TTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTT                                                           <  SRR4302545.5502611/94‑1 (MQ=60)
                                     TACATACCAAAACATACTCTGGTGACCAGTCCTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTT                                                          <  SRR4302545.4499072/94‑1 (MQ=60)
                                     TACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTT                                                          >  SRR4302545.10376701/1‑94 (MQ=60)
                                      ACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTT                                                         <  SRR4302545.6636525/94‑1 (MQ=60)
                                       CATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTT                                                        >  SRR4302545.2852628/1‑94 (MQ=60)
                                        ATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTC                                                       >  SRR4302545.1088957/1‑94 (MQ=60)
                                        ATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTC                                                       >  SRR4302545.6668324/1‑94 (MQ=60)
                                        ATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTC                                                       >  SRR4302545.10220309/1‑94 (MQ=60)
                                         TACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCG                                                      <  SRR4302545.467511/94‑1 (MQ=60)
                                         TACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCG                                                      <  SRR4302545.10477956/94‑1 (MQ=60)
                                         AACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCG                                                      <  SRR4302545.8103293/94‑1 (MQ=60)
                                          ACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGATTCTTCTTTTT‑AATTTTTTtggt                                                    >  SRR4302545.4454766/1‑90 (MQ=60)
                                          ACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGA                                                     >  SRR4302545.2330097/1‑94 (MQ=60)
                                           CCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTttga                                                    >  SRR4302545.5888883/1‑90 (MQ=60)
                                           CCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGAT                                                    >  SRR4302545.10541887/1‑94 (MQ=60)
                                           CCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGAT                                                    <  SRR4302545.7639079/94‑1 (MQ=60)
                                            CAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATA                                                   >  SRR4302545.7536502/1‑94 (MQ=60)
                                            CAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATA                                                   >  SRR4302545.658402/1‑94 (MQ=60)
                                            CAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATA                                                   <  SRR4302545.4219444/94‑1 (MQ=60)
                                            CAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATA                                                   <  SRR4302545.8886539/94‑1 (MQ=60)
                                             AAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATAC                                                  <  SRR4302545.827293/94‑1 (MQ=60)
                                             AAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATAC                                                  <  SRR4302545.4562571/94‑1 (MQ=60)
                                              AAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACG                                                 <  SRR4302545.1186218/94‑1 (MQ=60)
                                              AAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACG                                                 <  SRR4302545.7086918/94‑1 (MQ=60)
                                              AAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACG                                                 <  SRR4302545.3374595/94‑1 (MQ=60)
                                              AAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACG                                                 <  SRR4302545.2306275/94‑1 (MQ=60)
                                              AAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACG                                                 <  SRR4302545.9855842/94‑1 (MQ=60)
                                               AACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGA                                                >  SRR4302545.5425832/1‑94 (MQ=60)
                                               AACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGA                                                <  SRR4302545.3030444/94‑1 (MQ=60)
                                                ACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGAC                                               <  SRR4302545.2491595/94‑1 (MQ=60)
                                                ACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGAC                                               <  SRR4302545.7354646/94‑1 (MQ=60)
                                                ACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGAC                                               <  SRR4302545.9273451/94‑1 (MQ=60)
                                                  ATCCTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGA‑CCCAAGTCTATTTGTAAACGACTCAACTTTTTGAATTTTTTCGATACGACTT                                             <  SRR4302545.9648672/94‑1 (MQ=60)
                                                  ATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTT                                             >  SRR4302545.1152653/1‑94 (MQ=60)
                                                  ATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTT                                             <  SRR4302545.7313630/94‑1 (MQ=60)
                                                   TACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGGCCCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTT                                             >  SRR4302545.6003709/1‑94 (MQ=60)
                                                   TACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTC                                            <  SRR4302545.6034108/94‑1 (MQ=60)
                                                    ACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCT                                           <  SRR4302545.5271000/94‑1 (MQ=60)
                                                    ACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCT                                           <  SRR4302545.4951477/94‑1 (MQ=60)
                                                     CTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTG                                          <  SRR4302545.9184572/94‑1 (MQ=60)
                                                     CTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTG                                          <  SRR4302545.1815456/94‑1 (MQ=60)
                                                      TCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGA                                         >  SRR4302545.10320472/1‑94 (MQ=60)
                                                      TCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGA                                         >  SRR4302545.1168896/1‑94 (MQ=60)
                                                      TCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGA                                         <  SRR4302545.1431695/94‑1 (MQ=60)
                                                      TCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGA                                         >  SRR4302545.9513767/1‑94 (MQ=60)
                                                      TCTGGAGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCACGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGAaacaaatactaa                                         <  SRR4302545.9680389/94‑13 (MQ=60)
                                                       CTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGAT                                        >  SRR4302545.6347435/1‑94 (MQ=60)
                                                       CTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGAT                                        <  SRR4302545.2420930/94‑1 (MQ=60)
                                                       CTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGAT                                        <  SRR4302545.1545412/94‑1 (MQ=60)
                                                       CTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGAT                                        >  SRR4302545.8785805/1‑94 (MQ=60)
                                                        TGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGCCTATTTGTAAACGACTCTTTTTTTTGATTTTTTTCGttacgccttttgttt                                       >  SRR4302545.8032089/1‑79 (MQ=60)
                                                         GGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATAT                                      <  SRR4302545.3673325/94‑1 (MQ=60)
                                                         GGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATAT                                      <  SRR4302545.4814172/94‑1 (MQ=60)
                                                         GGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATAT                                      >  SRR4302545.7727787/1‑94 (MQ=60)
                                                          GTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATA                                     <  SRR4302545.324443/94‑1 (MQ=60)
                                                          GTCACCAGTACTCTGAGTTTTGTAATTGTCGAGT‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATA                                     <  SRR4302545.628167/94‑1 (MQ=60)
                                                           TGACCAGTATTCTGGGTGTTTGAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATAT                                    <  SRR4302545.4112811/94‑1 (MQ=60)
                                                           TGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATAT                                    >  SRR4302545.7211790/1‑94 (MQ=60)
                                                           TGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATAT                                    <  SRR4302545.2531256/94‑1 (MQ=60)
                                                           TCACCAGTGCTCTGGGTTTTTTAATTGTCGAGG‑CACAAGTCTATTTGTAAACGACTCATCTTTCTGAATTTTTTCGATACGACTTCTGATATAT                                    <  SRR4302545.6708914/94‑1 (MQ=60)
                                                           GGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATAT                                    <  SRR4302545.8750676/94‑1 (MQ=60)
                                                             ACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCT                                  <  SRR4302545.5441044/94‑1 (MQ=60)
                                                             ACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCT                                  <  SRR4302545.1583283/94‑1 (MQ=60)
                                                              CCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTA                                 <  SRR4302545.6759042/94‑1 (MQ=60)
                                                              CCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTA                                 <  SRR4302545.10233809/94‑1 (MQ=60)
                                                              CCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTA                                 >  SRR4302545.8897998/1‑94 (MQ=60)
                                                                AGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAA                               <  SRR4302545.9117449/94‑1 (MQ=60)
                                                                AGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAA                               <  SRR4302545.9413662/94‑1 (MQ=60)
                                                                AGTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAA                               <  SRR4302545.5694001/94‑1 (MQ=60)
                                                                 GTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAAT                              <  SRR4302545.6897750/94‑1 (MQ=60)
                                                                 GTACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAAT                              <  SRR4302545.9470674/94‑1 (MQ=60)
                                                                  TACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATT                             <  SRR4302545.8556190/94‑1 (MQ=60)
                                                                  TACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATT                             <  SRR4302545.834903/94‑1 (MQ=60)
                                                                  TACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATT                             <  SRR4302545.8392732/94‑1 (MQ=60)
                                                                  TACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATT                             >  SRR4302545.2559272/1‑94 (MQ=60)
                                                                   ACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTT                            <  SRR4302545.10088149/94‑1 (MQ=60)
                                                                   ACTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTT                            >  SRR4302545.7429253/1‑94 (MQ=60)
                                                                    CTCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTT                           >  SRR4302545.9260764/1‑94 (MQ=60)
                                                                     TCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCT                          <  SRR4302545.5755072/94‑1 (MQ=60)
                                                                     TCTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCT                          <  SRR4302545.2900623/94‑1 (MQ=60)
                                                                      CTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTT                         <  SRR4302545.8528270/94‑1 (MQ=60)
                                                                      CTGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTT                         >  SRR4302545.684205/1‑94 (MQ=60)
                                                                       TGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTT                        <  SRR4302545.3727195/94‑1 (MQ=60)
                                                                       TGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTT                        <  SRR4302545.7411088/94‑1 (MQ=60)
                                                                       TGGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTT                        <  SRR4302545.3121744/94‑1 (MQ=60)
                                                                        GGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTT                       <  SRR4302545.8382676/94‑1 (MQ=60)
                                                                        GGGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTT                       <  SRR4302545.1768536/94‑1 (MQ=60)
                                                                         GGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTT                      <  SRR4302545.8073225/94‑1 (MQ=60)
                                                                         GGTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTT                      <  SRR4302545.6253991/94‑1 (MQ=60)
                                                                          GTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTT                     <  SRR4302545.7781257/94‑1 (MQ=60)
                                                                          GTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTT                     <  SRR4302545.10295672/94‑1 (MQ=60)
                                                                          GTTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTT                     <  SRR4302545.9313325/94‑1 (MQ=60)
                                                                           TTTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTT                    >  SRR4302545.10027010/1‑94 (MQ=60)
                                                                           TTTTTTAATTGTCGAGG‑CCCAAGCCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTA                    <  SRR4302545.5984453/94‑1 (MQ=60)
                                                                            TTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTACACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTAT                   >  SRR4302545.1720036/1‑94 (MQ=60)
                                                                            TTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTAT                   <  SRR4302545.9913753/94‑1 (MQ=60)
                                                                            TTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTAT                   >  SRR4302545.10128776/1‑94 (MQ=60)
                                                                            TTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTAT                   >  SRR4302545.5513597/1‑94 (MQ=60)
                                                                            TTTTTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTAT                   <  SRR4302545.9517543/94‑1 (MQ=60)
                                                                               TTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATC                <  SRR4302545.7035688/94‑1 (MQ=60)
                                                                               TTAATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCCGATATATCTAAATTTCTTTTTTATATC                <  SRR4302545.505568/94‑1 (MQ=60)
                                                                                 AATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGA              >  SRR4302545.8969287/1‑94 (MQ=60)
                                                                                 AATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGA              <  SRR4302545.5903771/94‑1 (MQ=60)
                                                                                  ATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGAT             <  SRR4302545.7649667/94‑1 (MQ=60)
                                                                                  ATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGAT             >  SRR4302545.2351929/1‑94 (MQ=60)
                                                                                  ATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGAT             <  SRR4302545.3693514/94‑1 (MQ=60)
                                                                                  ATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGAT             <  SRR4302545.6461342/94‑1 (MQ=60)
                                                                                  ATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGAT             >  SRR4302545.494555/1‑94 (MQ=60)
                                                                                  ATTGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGAT             <  SRR4302545.5569044/94‑1 (MQ=60)
                                                                                    TGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAA           >  SRR4302545.970826/1‑94 (MQ=60)
                                                                                    TGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAA           <  SRR4302545.3715145/94‑1 (MQ=60)
                                                                                    TGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAA           <  SRR4302545.6020925/94‑1 (MQ=60)
                                                                                    TGTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAA           <  SRR4302545.9395114/94‑1 (MQ=60)
                                                                                     GTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAAC          <  SRR4302545.9806991/94‑1 (MQ=60)
                                                                                     GTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAAC          <  SRR4302545.8418363/94‑1 (MQ=60)
                                                                                     GTCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAAC          <  SRR4302545.5870797/94‑1 (MQ=60)
                                                                                      TCGAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACG         <  SRR4302545.9147794/94‑1 (MQ=60)
                                                                                        GAGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGAT       <  SRR4302545.643439/94‑1 (MQ=60)
                                                                                         AGG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATA      <  SRR4302545.7919424/94‑1 (MQ=60)
                                                                                          GG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAA     <  SRR4302545.7552913/94‑1 (MQ=60)
                                                                                          GG‑CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAA     >  SRR4302545.10089592/1‑94 (MQ=60)
                                                                                             CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACC   <  SRR4302545.1377839/94‑1 (MQ=60)
                                                                                             CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACC   >  SRR4302545.2188759/1‑94 (MQ=60)
                                                                                             CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACC   >  SRR4302545.5300539/1‑94 (MQ=60)
                                                                                             CCCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACC   >  SRR4302545.972997/1‑94 (MQ=60)
                                                                                              CCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATGTCTAAATTTCTTTTTTATATCGATAACGATAACCG  >  SRR4302545.7633100/1‑94 (MQ=60)
                                                                                              CCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCG  <  SRR4302545.4957457/94‑1 (MQ=60)
                                                                                              CCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCG  <  SRR4302545.9937199/94‑1 (MQ=60)
                                                                                              |                                                                                             
ATGTTGATAGCTTTATTTACAAAATAGGCCTTAAGGTTACATACCAAAACATACTCTGGTGACCAGTACTCTGGGTTTTTTAATTGTCGAGG‑CTCAAGTCTATTTGTAAACGACTCATCTTTTTGAATTTTTTCGATACGACTTCTGATATATCTAAATTTCTTTTTTATATCGATAACGATAACCG  >  NC_000913/3790910‑3791096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑