Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	647	270.1	21258240	98.4%	20918108	94.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,873,627	Δ1 bp	coding (506/672 nt)	yidX →	putative replicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,873,625	0	G	.	99.9%	4253.6 / ‑3.8	927	coding (504/672 nt)	yidX	putative replicase
Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (497/428); minor base A (1/0); total (499/428)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 991 total aligned reads displayed.

GAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAA  >  NC_000913/3873532‑3873714

 aaaaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgg                                                                                          <  1:3612708/94‑1 (MQ=255)

 aaaaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCga                                                                                          >  2:9227354/1‑93 (MQ=255)

  aaaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCgga                                                                                         >  1:2895041/1‑93 (MQ=255)

   aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggat                                                                                        >  1:939806/1‑92 (MQ=255)

   aaaTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggat                                                                                        <  1:1169927/94‑3 (MQ=255)

     aTAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCggatgg                                                                                      >  2:1593007/1‑90 (MQ=255)

        aaaaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGgtgt                                                                                  <  1:27265/94‑1 (MQ=255)

          aaCATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGttt                                                                                <  2:6020194/94‑1 (MQ=255)

            cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTcc                                                                              >  1:8128694/1‑94 (MQ=255)

            cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTcc                                                                              >  1:8559460/1‑94 (MQ=255)

            cATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTcc                                                                              >  2:8254096/1‑94 (MQ=255)

             aTGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCg                                                                             <  2:3698452/94‑1 (MQ=255)

             aTGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCg                                                                             >  2:1875029/1‑94 (MQ=255)

               ggATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgca                                                                           >  2:7565102/1‑94 (MQ=255)

                gATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCgcag                                                                          <  2:2026803/94‑1 (MQ=255)

                      tCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTAc                                                                    <  2:5208921/94‑1 (MQ=255)

                       cAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACt                                                                   <  1:72639/94‑1 (MQ=255)

                       cAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACt                                                                   >  1:608751/1‑94 (MQ=255)

                         aaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGc                                                                 <  1:2953766/94‑1 (MQ=255)

                         aaGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGc                                                                 >  2:8005895/1‑94 (MQ=255)

                          aGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATAGTGTTTCCGCAGCATTACTGcc                                                                <  1:912900/94‑1 (MQ=255)

                           ggTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCa                                                               >  2:4959746/1‑94 (MQ=255)

                           ggTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCa                                                               >  2:6616513/1‑94 (MQ=255)

                            gTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAg                                                              >  2:6409090/1‑94 (MQ=255)

                             tGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGt                                                             >  1:5209447/1‑94 (MQ=255)

                              gATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTg                                                            >  1:1781113/1‑94 (MQ=255)

                               aTGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATTCTATTCCCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGa                                                           <  2:2159023/94‑1 (MQ=255)

                               aTGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGa                                                           <  1:1653421/94‑1 (MQ=255)

                                 ggCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACt                                                         <  1:2232299/94‑1 (MQ=255)

                                   cGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt                                                       <  2:3513642/94‑1 (MQ=255)

                                   cGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt                                                       <  1:540682/94‑1 (MQ=255)

                                   cGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATACACCCAGACGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGt                                                       >  2:3834308/1‑94 (MQ=255)

                                    gTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGtt                                                      >  1:9834951/1‑94 (MQ=255)

                                    gTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGtt                                                      >  1:3235289/1‑94 (MQ=255)

                                     ttCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTa                                                     <  2:8928526/94‑1 (MQ=255)

                                     ttCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTa                                                     <  1:3768844/94‑1 (MQ=255)

                                       cTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACg                                                   <  2:9095797/94‑1 (MQ=255)

                                          ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                                <  2:3295614/94‑1 (MQ=255)

                                          ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                                <  2:9804835/94‑1 (MQ=255)

                                          ccatccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTg                                                >  1:4342806/1‑94 (MQ=255)

                                           catccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTgg                                               >  1:6812393/1‑94 (MQ=255)

                                           catccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTgg                                               >  2:10572285/1‑94 (MQ=255)

                                            atccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGa                                              >  1:4509618/1‑94 (MQ=255)

                                             tccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc                                             <  1:2571034/94‑1 (MQ=255)

                                             tccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc                                             <  1:6938016/94‑1 (MQ=255)

                                             tccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAc                                             <  1:564177/94‑1 (MQ=255)

                                              ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAca                                            >  1:7542348/1‑94 (MQ=255)

                                              ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAca                                            <  2:680194/94‑1 (MQ=255)

                                              ccatTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAca                                            <  1:7735148/94‑1 (MQ=255)

                                                atTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatc                                          >  1:10042480/1‑94 (MQ=255)

                                                 tttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatca                                         <  2:4396009/94‑1 (MQ=255)

                                                  ttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat                                        >  1:10536867/1‑94 (MQ=255)

                                                  ttAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGAcatcat                                        >  2:8356393/1‑94 (MQ=255)

                                                   tAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCAtt                                       <  2:4099444/94‑1 (MQ=255)

                                                     aaGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTAc                                     <  1:2057982/94‑1 (MQ=255)

                                                      aGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACt                                    <  2:2951673/94‑1 (MQ=255)

                                                       gTGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTg                                   <  2:9454481/94‑1 (MQ=255)

                                                       atGCGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTg                                   <  2:2430694/93‑1 (MQ=255)

                                                          cGATTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc                                <  1:1465529/94‑1 (MQ=255)

                                                          cGATTTTATGAATACTATTCAACCAGAGGCATGCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCAc                                <  2:7205188/94‑1 (MQ=255)

                                                            aTTTTATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCg                              <  1:7050698/94‑1 (MQ=255)

                                                             ttttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGc                             >  1:8983550/1‑94 (MQ=255)

                                                              tttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCt                            >  1:10212192/1‑94 (MQ=255)

                                                              tttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCt                            >  1:2373306/1‑94 (MQ=255)

                                                              tttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCt                            <  1:5893939/94‑1 (MQ=255)

                                                               ttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg                           >  1:7952649/1‑94 (MQ=255)

                                                               ttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg                           <  2:692009/94‑1 (MQ=255)

                                                               ttATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTg                           >  2:10213333/1‑94 (MQ=255)

                                                               ttAGGAATACTATTCACCCAGAAGCAGTCC‑GGATGGTGTTTCCCCAGCCTTACTGCCAGGCACTGTTACGCTGGACATCATTACTGCCCCGCTg                           <  2:8511145/94‑1 (MQ=255)

                                                                tATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCCCCGCTGc                          >  2:8091154/1‑94 (MQ=255)

                                                                tATGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGc                          <  1:6501131/94‑1 (MQ=255)

                                                                 aTGAATACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCa                         <  2:5733393/94‑1 (MQ=255)

                                                                     aTACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAAttt                     <  1:4805445/94‑1 (MQ=255)

                                                                      tACTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTc                    >  2:4680656/1‑94 (MQ=255)

                                                                        cTATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTg                  >  2:2643653/1‑94 (MQ=255)

                                                                         tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                 >  1:10293772/1‑94 (MQ=255)

                                                                         tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                 >  2:7894773/1‑94 (MQ=255)

                                                                         tATTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTgg                 >  2:6263395/1‑94 (MQ=255)

                                                                          aTTCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGt                >  2:1293045/1‑94 (MQ=255)

                                                                           ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt               >  2:9708604/1‑94 (MQ=255)

                                                                           ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt               >  2:536927/1‑94 (MQ=255)

                                                                           ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt               >  1:7400930/1‑94 (MQ=255)

                                                                           ttCACCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGtt               <  2:1194540/94‑1 (MQ=255)

                                                                              aCCCAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGta            <  2:1748629/94‑1 (MQ=255)

                                                                               cccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtat           >  1:660769/1‑94 (MQ=255)

                                                                                ccAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGtata          <  2:8697793/94‑1 (MQ=255)

                                                                                 cAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTatat         >  2:7357298/1‑94 (MQ=255)

                                                                                 cAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTatat         <  1:6306485/94‑1 (MQ=255)

                                                                                 cAGAGGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACAGCTGCAATTTCTGGTTGTatat         >  1:8370035/1‑94 (MQ=255)

                                                                                   gagGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGc       >  1:4002324/1‑94 (MQ=255)

                                                                                    agGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCa      >  1:4602428/1‑94 (MQ=255)

                                                                                    agGCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCa      <  2:4220495/94‑1 (MQ=255)

                                                                                     ggCATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTGCTGGTTGTATATGCAg     >  1:9534186/1‑94 (MQ=255)

                                                                                     ggCATTCC‑GGATGGTGTTTCCGAAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAg     >  2:10311479/1‑94 (MQ=255)

                                                                                       cATTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGCCATCATTCCTGCACCGCGGCCATTTCTAGTTGTATATGccgga   >  1:7168382/1‑90 (MQ=255)

                                                                                        aTTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaa  >  2:10052935/1‑94 (MQ=255)

                                                                                        aTTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaa  <  1:5029285/94‑1 (MQ=255)

                                                                                        aTTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaa  >  1:9711614/1‑94 (MQ=255)

                                                                                        aTTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaa  >  1:8723327/1‑94 (MQ=255)

                                                                                        aTTCC‑GGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTaa  >  2:5503402/1‑94 (MQ=255)

GAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAAGTGCGATTTTATGAATACTATTCACCCAGAGGCATTCCGGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAA  >  NC_000913/3873532‑3873714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 339 total aligned reads displayed.

CCGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT  >  NC_000913/3876502‑3876688

 CGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCC                                                                                              >  SRR4302545.6776333/1‑94 (MQ=60)

  GGATCGCGTTCCTGGCCGTCTGCCAGTTTGCCCGGCAGGCCCGCTACGTCGAGCACACCTTTACGGCGGGTCGTTTCACGCGCGCGCCGCGCCG                                                                                             <  SRR4302545.8323581/94‑1 (MQ=60)

  GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCG                                                                                             <  SRR4302545.2263499/94‑1 (MQ=60)

  GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCG                                                                                             <  SRR4302545.10185988/94‑1 (MQ=60)

   GATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGC                                                                                            <  SRR4302545.307275/94‑1 (MQ=60)

    ATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCT                                                                                           <  SRR4302545.3239304/94‑1 (MQ=60)

    ATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGCTTTCACGCGCTCGGCGCGCCGCT                                                                                           >  SRR4302545.5749581/1‑94 (MQ=60)

    ATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCT                                                                                           >  SRR4302545.5749580/1‑94 (MQ=60)

      CGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTC                                                                                         <  SRR4302545.640376/94‑1 (MQ=60)

       GCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCCTCA                                                                                        >  SRR4302545.5929478/1‑94 (MQ=60)

       GCGTTCCTGACAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCA                                                                                        <  SRR4302545.6293403/94‑1 (MQ=60)

         GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACG                                                                                      <  SRR4302545.8911730/94‑1 (MQ=60)

         GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTTCGCGCGCGACGCGCCGCTTCCCG                                                                                      >  SRR4302545.6814867/1‑94 (MQ=60)

          TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCCCGCGGCGCGGCGCTTCcccg                                                                                     >  SRR4302545.7868216/1‑90 (MQ=60)

          TTCCTGGCAGTCTGCCAGGTTGCCCGGCAGGCCCGCTAAGTCGATCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGG                                                                                     <  SRR4302545.8078651/94‑1 (MQ=60)

            CCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGC                                                                                   <  SRR4302545.4715334/94‑1 (MQ=60)

             CTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCA                                                                                  <  SRR4302545.5668557/94‑1 (MQ=60)

             CTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACcggcc                                                                                  >  SRR4302545.598998/1‑89 (MQ=60)

              TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGACGCGCCGCCTCACGGGCCC                                                                                 >  SRR4302545.2294437/1‑94 (MQ=60)

              TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCAC                                                                                 <  SRR4302545.5325015/94‑1 (MQ=60)

               GGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACG                                                                                <  SRR4302545.5355012/94‑1 (MQ=60)

                GCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGG                                                                               <  SRR4302545.9059253/94‑1 (MQ=60)

                GCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGG                                                                               <  SRR4302545.10191710/94‑1 (MQ=60)

                GCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCCTCACGGGCACGG                                                                               >  SRR4302545.4790316/1‑94 (MQ=60)

                GCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCCCGGGCCCGG                                                                               >  SRR4302545.6845154/1‑94 (MQ=60)

                 CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGCAGCGCCGCTTCGCGGGCACGGG                                                                              >  SRR4302545.9021030/1‑94 (MQ=60)

                 CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG                                                                              <  SRR4302545.765207/94‑1 (MQ=60)

                 CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG                                                                              <  SRR4302545.2553535/94‑1 (MQ=60)

                 CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG                                                                              <  SRR4302545.7354942/94‑1 (MQ=60)

                 CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGG                                                                              >  SRR4302545.3488776/1‑94 (MQ=60)

                 CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACCGGCACGGG                                                                              >  SRR4302545.1565941/1‑94 (MQ=60)

                  AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGATTTTACGCGCGCGACGCGCCGCTTCACGGGCGCGGGG                                                                             >  SRR4302545.962845/1‑94 (MQ=60)

                  AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCCTCACGGGCACGGGG                                                                             >  SRR4302545.4555549/1‑94 (MQ=60)

                  AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACCCGCGCGACGCGCCGCTTtcccgggacgggc                                                                             >  SRR4302545.8175173/1‑81 (MQ=60)

                  AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCTTCACGGGCGCGGGC                                                                             >  SRR4302545.3998421/1‑94 (MQ=60)

                  AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACCGGCACGGGC                                                                             >  SRR4302545.8769661/1‑94 (MQ=60)

                   GTCTGCCACTTTGCCCGGCAGGCCCGCTAAGTCGATCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCCCCGCTTCACGGGCACGGGCA                                                                            <  SRR4302545.3501837/94‑1 (MQ=60)

                     CTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGC                                                                          <  SRR4302545.2073994/94‑1 (MQ=60)

                     CTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGGGCCGCTCCACGGGGACGGGCGGC                                                                          >  SRR4302545.2960577/1‑94 (MQ=60)

                      TGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACCGGCACGGGCGGCA                                                                         >  SRR4302545.10449904/1‑94 (MQ=60)

                       GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCAT                                                                        <  SRR4302545.6178401/94‑1 (MQ=60)

                       GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACGGGGACGGGCAGCAC                                                                        >  SRR4302545.911141/1‑94 (MQ=60)

                        CCAGTTTTCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCAGTTCTAGCGCGCGGCGCGCCGCTTCACGGGCACcggcttcatc                                                                       >  SRR4302545.9625866/1‑84 (MQ=58)

                        CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATC                                                                       <  SRR4302545.5320840/94‑1 (MQ=60)

                        CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATC                                                                       <  SRR4302545.6523667/94‑1 (MQ=60)

                         CAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCG                                                                      <  SRR4302545.3565994/94‑1 (MQ=60)

                         CAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCG                                                                      <  SRR4302545.9022440/94‑1 (MQ=60)

                         CAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCGTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCG                                                                      <  SRR4302545.4817957/94‑1 (MQ=60)

                          AGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCTTTCACGCGCGCGGCGCGACGCCTCACCGGGAAGGGCAGAATCGA                                                                     >  SRR4302545.5061845/1‑94 (MQ=60)

                          AGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCActga                                                                     >  SRR4302545.7031644/1‑90 (MQ=60)

                           GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGGCGCGCCGCTTCACCGGCACGGGCAGCATCGca                                                                    >  SRR4302545.10329635/1‑92 (MQ=60)

                           GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGAT                                                                    <  SRR4302545.4356925/94‑1 (MQ=60)

                           GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGAT                                                                    <  SRR4302545.10820781/94‑1 (MQ=60)

                            TTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATA                                                                   <  SRR4302545.2688310/94‑1 (MQ=60)

                             TTGCCGGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGTTCATTTCCCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAA                                                                  <  SRR4302545.8000934/94‑1 (MQ=60)

                              TGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAT                                                                 <  SRR4302545.6259633/94‑1 (MQ=60)

                              TGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAT                                                                 <  SRR4302545.421336/94‑1 (MQ=60)

                              TGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAT                                                                 <  SRR4302545.2588405/94‑1 (MQ=60)

                               GCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATT                                                                <  SRR4302545.10616450/94‑1 (MQ=60)

                                CCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACCCGCGCGACGCGCCGCCTCACCGGGCCGGGGAGCCTCGATAATTT                                                               >  SRR4302545.1655375/1‑94 (MQ=46)

                                 CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTT                                                              <  SRR4302545.983435/94‑1 (MQ=60)

                                 CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTT                                                              <  SRR4302545.8568265/94‑1 (MQ=60)

                                 CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTT                                                              <  SRR4302545.3737682/94‑1 (MQ=60)

                                 CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTAAGCGCGCGGCGCGCCGCCTCACGGGGACGGGGAGCATCGCTAATTTT                                                              >  SRR4302545.4982385/1‑94 (MQ=42)

                                 CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTT                                                              >  SRR4302545.4982386/1‑94 (MQ=60)

                                  CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG                                                             <  SRR4302545.8380393/94‑1 (MQ=60)

                                  CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG                                                             <  SRR4302545.5682618/94‑1 (MQ=60)

                                   GGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTTACGCGCGCGACGCGCCGCGTCACGGGCACGGGCAGCATCGATAATTTTGC                                                            >  SRR4302545.1762120/1‑94 (MQ=60)

                                    GCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCC                                                           <  SRR4302545.6959501/94‑1 (MQ=60)

                                    GCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCC                                                           <  SRR4302545.4311076/94‑1 (MQ=60)

                                    GCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGCGGCGCGCCGCTTTACCGGGACGGGCAGCcaccataattttttc                                                           >  SRR4302545.294769/1‑79 (MQ=37)

                                    GCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACCGGGACGGGGAGCATCGATCATTTTTCC                                                           >  SRR4302545.6613457/1‑94 (MQ=60)

                                     CAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCA                                                          <  SRR4302545.5223068/94‑1 (MQ=60)

                                     CAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGCGACGCGCCGCCTCACCGGGACGGGCAGGATCGATAATTTTGTCA                                                          >  SRR4302545.6394245/1‑94 (MQ=57)

                                      AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTGATTTCACGCGCGCGGCGGGCCGCTTCTCGGGCACGGGGAGCATCGATAATTTTTCCAA                                                         >  SRR4302545.3727135/1‑94 (MQ=60)

                                       GGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAAC                                                        <  SRR4302545.9047123/94‑1 (MQ=60)

                                        GCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACC                                                       <  SRR4302545.9817160/94‑1 (MQ=60)

                                          CCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGGCGCGCCGCTTCACCGGGACGGGCAGCATTCATAATTTTTCCCACCAC                                                     >  SRR4302545.4570258/1‑94 (MQ=60)

                                          CCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAC                                                     <  SRR4302545.3778499/94‑1 (MQ=60)

                                           CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCGAACCACG                                                    <  SRR4302545.7770848/94‑1 (MQ=60)

                                           CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTttcaaccacc                                                    >  SRR4302545.2721792/1‑84 (MQ=60)

                                           CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTGCCAACCACG                                                    >  SRR4302545.6847292/1‑94 (MQ=60)

                                            GCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGGACGGGCAGCATCGATAATTTTGCCAACCACGA                                                   >  SRR4302545.4305466/1‑94 (MQ=60)

                                             CTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAT                                                  <  SRR4302545.5726866/94‑1 (MQ=60)

                                             CTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGAT                                                  <  SRR4302545.5759681/94‑1 (MQ=60)

                                              TAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCGCGATT                                                 <  SRR4302545.5162360/94‑1 (MQ=60)

                                              TAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGGCGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATT                                                 >  SRR4302545.3539608/1‑94 (MQ=60)

                                               AAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTT                                                <  SRR4302545.9124347/94‑1 (MQ=60)

                                               AAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTT                                                <  SRR4302545.4455593/94‑1 (MQ=60)

                                                AGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTT                                               <  SRR4302545.1400567/94‑1 (MQ=60)

                                                AGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGCAGCGTCGATAATTTTTCCAAACACGAATTT                                               >  SRR4302545.1713581/1‑94 (MQ=60)

                                                 GTCGAGCGCCCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC                                              <  SRR4302545.7751501/94‑1 (MQ=60)

                                                 GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC                                              <  SRR4302545.6927051/94‑1 (MQ=60)

                                                 GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC                                              <  SRR4302545.6927052/94‑1 (MQ=60)

                                                 GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC                                              <  SRR4302545.9285902/94‑1 (MQ=60)

                                                 GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC                                              <  SRR4302545.5502797/94‑1 (MQ=60)

                                                 GTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTC                                              <  SRR4302545.2902250/94‑1 (MQ=60)

                                                 GTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCTTCCCCGGCACGGGCAGCATCGATAAATTTTCCAACCACGATTTTC                                              >  SRR4302545.2581441/1‑94 (MQ=60)

                                                  TCGAGCGCGCCTTTACGGCGGGTCATTCCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG                                             <  SRR4302545.2143606/94‑1 (MQ=60)

                                                  TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG                                             <  SRR4302545.9838087/94‑1 (MQ=60)

                                                  TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG                                             <  SRR4302545.9503359/94‑1 (MQ=60)

                                                   CGAGCGCGCCTTTACGGCGGGTCATTTCACGCGCGCGACGCCCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGC                                            <  SRR4302545.1352767/94‑1 (MQ=60)

                                                   CGAGCGCACCTTTACGGCGGGTGATTTTACGCGCGCGACGCCGCGCTTtccgggagctggccgcattctacattttgatcaacaagattttcgc                                            >  SRR4302545.7154630/1‑48 (MQ=60)

                                                   CGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCGCGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGC                                            <  SRR4302545.2702874/94‑1 (MQ=60)

                                                   CGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGC                                            <  SRR4302545.607540/94‑1 (MQ=60)

                                                   CGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACCATTTTCGC                                            >  SRR4302545.7448469/1‑94 (MQ=60)

                                                   CGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTGCAACCACGATTTTCGC                                            >  SRR4302545.8926341/1‑94 (MQ=60)

                                                   CGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGGGACGCGCCGCTTCTCGGGGACGGGCCGCATCGGTAATTTTGCCACCCACGATTTTTGC                                            >  SRR4302545.8744560/1‑94 (MQ=57)

                                                    GAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCAACCACGATTTTTGCG                                           >  SRR4302545.2300355/1‑94 (MQ=60)

                                                    GAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCG                                           <  SRR4302545.5852636/94‑1 (MQ=60)

                                                    GAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCG                                           <  SRR4302545.1288000/94‑1 (MQ=60)

                                                    GAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCG                                           <  SRR4302545.5852637/94‑1 (MQ=60)

                                                    GAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCACCGGTAATTTTTCCAACCACGATTTTttcg                                           >  SRR4302545.3327704/1‑90 (MQ=60)

                                                     AGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCAACCACGATTTTtgcgc                                          >  SRR4302545.2058686/1‑89 (MQ=60)

                                                     AGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGT                                          <  SRR4302545.1122448/94‑1 (MQ=60)

                                                      GCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTC                                         <  SRR4302545.6033498/94‑1 (MQ=60)

                                                      GCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTC                                         <  SRR4302545.5777162/94‑1 (MQ=60)

                                                       CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGGCAACCACGATTTTTGCGTCG                                        >  SRR4302545.5695703/1‑94 (MQ=60)

                                                       CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG                                        <  SRR4302545.6555156/94‑1 (MQ=60)

                                                       CGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCGTCACCGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG                                        >  SRR4302545.7596775/1‑94 (MQ=60)

                                                       CGCACCTTTACGGCGGGTCAGGTCACGCGGGCGACGCACCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCTCGATTTTCGCGTCG                                        <  SRR4302545.6555157/94‑1 (MQ=60)

                                                       CGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTCACCGGGACGGGCAGCATCGATAATTTTTCCAACCACCAATTTCGCGTCG                                        >  SRR4302545.70864/1‑94 (MQ=60)

                                                       CCCACCTTTACGGCGGGGCATTTCCCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG                                        <  SRR4302545.1193555/94‑1 (MQ=60)

                                                          CCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTT                                     <  SRR4302545.8701447/94‑1 (MQ=60)

                                                          ACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCCTCACGGGCCCGGGCAGCATCGATAATTTTTCCAACCACCATTTTtgcggcggct                                     >  SRR4302545.7971799/1‑84 (MQ=60)

                                                          ACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGGT                                     >  SRR4302545.3454163/1‑94 (MQ=60)

                                                           CCTTTACGGCGGGTCATTTCGCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTG                                    <  SRR4302545.7812764/94‑1 (MQ=60)

                                                           CCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTG                                    <  SRR4302545.9364631/94‑1 (MQ=60)

                                                           CCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTG                                    <  SRR4302545.7812763/94‑1 (MQ=60)

                                                           CCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTG                                    <  SRR4302545.9944464/94‑1 (MQ=60)

                                                             TTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGG                                  <  SRR4302545.4645753/94‑1 (MQ=60)

                                                              TTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGT                                 <  SRR4302545.8236805/94‑1 (MQ=60)

                                                              TTACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAAATTTGCCCACCACGATTTTCGCGTCGGGTGGGG                                 >  SRR4302545.4658899/1‑94 (MQ=60)

                                                               TACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTT                                <  SRR4302545.1817888/94‑1 (MQ=60)

                                                                ACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTT                               <  SRR4302545.4415324/94‑1 (MQ=60)

                                                                ACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTT                               <  SRR4302545.6069192/94‑1 (MQ=60)

                                                                 CGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTT                              <  SRR4302545.6883999/94‑1 (MQ=60)

                                                                 CGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGGTTT                              >  SRR4302545.8305328/1‑94 (MQ=60)

                                                                  GGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTC                             >  SRR4302545.10000030/1‑94 (MQ=60)

                                                                   GCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCC                            <  SRR4302545.5408208/94‑1 (MQ=60)

                                                                   GCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCC                            <  SRR4302545.8549961/94‑1 (MQ=60)

                                                                    TGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCA                           >  SRR4302545.5871396/1‑94 (MQ=60)

                                                                    CGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGGTGGGTTTTCCA                           >  SRR4302545.4047703/1‑94 (MQ=60)

                                                                     GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG                          <  SRR4302545.10892350/94‑1 (MQ=60)

                                                                     GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG                          <  SRR4302545.5137895/94‑1 (MQ=60)

                                                                     GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG                          >  SRR4302545.1774927/1‑94 (MQ=60)

                                                                     GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG                          <  SRR4302545.2757950/94‑1 (MQ=60)

                                                                     GGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG                          >  SRR4302545.651554/1‑94 (MQ=60)

                                                                      GGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGC                         <  SRR4302545.394131/94‑1 (MQ=60)

                                                                       GTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCA                        >  SRR4302545.4278213/1‑94 (MQ=60)

                                                                       GCCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCA                        <  SRR4302545.10220767/94‑1 (MQ=60)

                                                                        TCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG                       <  SRR4302545.3922166/94‑1 (MQ=60)

                                                                        TCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG                       <  SRR4302545.1208914/94‑1 (MQ=60)

                                                                        GCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG                       <  SRR4302545.1209258/94‑1 (MQ=60)

                                                                         CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG                      <  SRR4302545.1708094/94‑1 (MQ=60)

                                                                         CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG                      >  SRR4302545.8886039/1‑94 (MQ=60)

                                                                         CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG                      >  SRR4302545.10918346/1‑94 (MQ=60)

                                                                         CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG                      <  SRR4302545.989583/94‑1 (MQ=60)

                                                                         CATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG                      >  SRR4302545.8886040/1‑94 (MQ=60)

                                                                          ATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT                     >  SRR4302545.9309920/1‑94 (MQ=60)

                                                                          ATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT                     <  SRR4302545.8933129/94‑1 (MQ=60)

                                                                          ATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT                     >  SRR4302545.5314780/1‑94 (MQ=60)

                                                                           TTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA                    >  SRR4302545.7131236/1‑94 (MQ=60)

                                                                            TTCACGGGCGGGACGCGCCGCTTCACGGGCACGGGCACCATCGATAATTTTGCCAACCACGATTTTAGCGACGGTTGCATTTTCCAGCAGGTAT                   <  SRR4302545.7241926/94‑1 (MQ=60)

                                                                            TTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT                   >  SRR4302545.4506494/1‑94 (MQ=60)

                                                                            TTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT                   <  SRR4302545.3188496/94‑1 (MQ=60)

                                                                            TTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT                   <  SRR4302545.4344449/94‑1 (MQ=60)

                                                                             TCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT                  >  SRR4302545.1169297/1‑94 (MQ=60)

                                                                             TCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT                  >  SRR4302545.1004234/1‑94 (MQ=60)

                                                                              CACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCCACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTC                 >  SRR4302545.8609145/1‑94 (MQ=60)

                                                                              CACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTC                 <  SRR4302545.6314329/94‑1 (MQ=60)

                                                                               ACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT                <  SRR4302545.6716899/94‑1 (MQ=60)

                                                                               ACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT                <  SRR4302545.10096089/94‑1 (MQ=60)

                                                                               ACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTGGGGTTTTCCCGCAGGTATTCT                >  SRR4302545.1899540/1‑94 (MQ=60)

                                                                                CGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG               <  SRR4302545.808853/94‑1 (MQ=60)

                                                                                CGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG               <  SRR4302545.4329303/94‑1 (MQ=60)

                                                                                CGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG               <  SRR4302545.7010313/94‑1 (MQ=60)

                                                                                 GCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGC              <  SRR4302545.2370898/94‑1 (MQ=60)

                                                                                 GCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGC              >  SRR4302545.8839220/1‑94 (MQ=60)

                                                                                  CGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCC             <  SRR4302545.3625279/94‑1 (MQ=60)

                                                                                  CGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCC             <  SRR4302545.392940/94‑1 (MQ=60)

                                                                                   GCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCA            >  SRR4302545.9585811/1‑94 (MQ=60)

                                                                                    CGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAG           <  SRR4302545.7211489/94‑1 (MQ=60)

                                                                                    CGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGGATTCTGCCAG           >  SRR4302545.1191748/1‑94 (MQ=60)

                                                                                      CGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA         <  SRR4302545.6538738/94‑1 (MQ=60)

                                                                                      CGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA         <  SRR4302545.7930274/94‑1 (MQ=60)

                                                                                      CGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA         >  SRR4302545.4594714/1‑94 (MQ=60)

                                                                                      CGACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA         <  SRR4302545.6449642/94‑1 (MQ=60)

                                                                                       GACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG        <  SRR4302545.10747364/94‑1 (MQ=60)

                                                                                        ACGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT       >  SRR4302545.7140130/1‑94 (MQ=60)

                                                                                         CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT      <  SRR4302545.283276/94‑1 (MQ=60)

                                                                                         CGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT      >  SRR4302545.656934/1‑94 (MQ=60)

                                                                                          GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC     <  SRR4302545.7036853/94‑1 (MQ=60)

                                                                                           CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG    >  SRR4302545.7521247/1‑94 (MQ=60)

                                                                                           CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG    >  SRR4302545.605887/1‑94 (MQ=60)

                                                                                           CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG    >  SRR4302545.7521249/1‑94 (MQ=60)

                                                                                            GCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT   >  SRR4302545.1059778/1‑94 (MQ=60)

                                                                                            GCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT   >  SRR4302545.1029172/1‑94 (MQ=60)

                                                                                             CCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT  <  SRR4302545.3421144/94‑1 (MQ=60)

                                                                                             CCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT  <  SRR4302545.291584/94‑1 (MQ=60)

CCGGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT  >  NC_000913/3876502‑3876688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`