Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,438,720	T→C	H198R (CAC→CGC)	rpsD ←	30S ribosomal subunit protein S4

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,438,720	0	T	C	100.0%	879.8 / NA	252	H198R (CAC→CGC)	rpsD	30S ribosomal subunit protein S4
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (127/125); total (127/125)

Only 100 of 257 total aligned reads displayed.

GGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGTGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTT  >  NC_000913/3438630‑3438809

ggCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGgcgt                                                                                         <  1:3571719/93‑1 (MQ=255)

 gcgcGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGtt                                                                                        <  2:6337395/93‑1 (MQ=255)

  cgcgGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTc                                                                                       <  2:2270052/93‑1 (MQ=255)

    cgGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGt                                                                                     <  1:3529212/93‑1 (MQ=255)

      gTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTa                                                                                   >  2:4326462/1‑93 (MQ=255)

      gTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTa                                                                                   >  2:6167621/1‑93 (MQ=255)

       ttttAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTaa                                                                                  >  2:3694958/1‑93 (MQ=255)

       ttttAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTaa                                                                                  >  2:1484615/1‑93 (MQ=255)

          tAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGt                                                                               >  2:3080760/1‑93 (MQ=255)

            gAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTcc                                                                             <  2:2375365/93‑1 (MQ=255)

            gAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTcc                                                                             <  1:3129121/93‑1 (MQ=255)

            gAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTcc                                                                             <  2:1217701/93‑1 (MQ=255)

            gAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTcc                                                                             <  1:723435/93‑1 (MQ=255)

            gAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAAAGTcc                                                                             <  2:5627423/93‑1 (MQ=255)

              aaCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGc                                                                           <  1:5288742/93‑1 (MQ=255)

               aCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGca                                                                          <  2:5549366/93‑1 (MQ=255)

               aCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGca                                                                          >  1:4600602/1‑93 (MQ=255)

                ctctGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcag                                                                         >  1:1607935/1‑93 (MQ=255)

                 tctGTCACAGAACCCTGCATTTTGTCCTCTCTTTGGTACTAAGCTTTTCTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcaga                                                                        <  1:3036969/93‑1 (MQ=255)

                 tctGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcaga                                                                        <  2:900342/93‑1 (MQ=255)

                 tctGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcaga                                                                        >  1:1988277/1‑93 (MQ=255)

                 tctGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcaga                                                                        >  1:2160116/1‑93 (MQ=255)

                    gTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcagacag                                                                     <  2:1933310/93‑1 (MQ=255)

                     tCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcagacaga                                                                    >  2:757350/1‑93 (MQ=255)

                     tCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGcagacaga                                                                    >  1:2110140/1‑93 (MQ=255)

                      cacaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGAt                                                                   <  1:4471919/93‑1 (MQ=255)

                       acaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATc                                                                  <  2:4024132/93‑1 (MQ=255)

                       acaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATc                                                                  <  2:3583145/93‑1 (MQ=255)

                       acaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATc                                                                  >  2:3153169/1‑93 (MQ=255)

                        caGAACCCTGCATTGTGTTCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCa                                                                 <  1:1022585/93‑1 (MQ=255)

                        caGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCa                                                                 <  1:5084571/93‑1 (MQ=255)

                        aaGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCa                                                                 <  2:3835998/92‑1 (MQ=255)

                         aGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAg                                                                >  2:4699246/1‑93 (MQ=255)

                         aGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAg                                                                <  1:6714/93‑1 (MQ=255)

                          gAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGa                                                               >  2:2725423/1‑93 (MQ=255)

                          gAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGa                                                               <  1:615435/93‑1 (MQ=255)

                           accccTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGaa                                                              <  1:1901986/91‑1 (MQ=255)

                            aCCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAAc                                                             <  2:4610462/93‑1 (MQ=255)

                             cccTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACg                                                            >  2:2667958/1‑93 (MQ=255)

                              ccTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGc                                                           >  1:3318828/1‑93 (MQ=255)

                              ccTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGc                                                           >  2:4078937/1‑93 (MQ=255)

                                tGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTc                                                         <  1:6276867/93‑1 (MQ=255)

                                 gCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTcc                                                        <  1:3736099/93‑1 (MQ=255)

                                 gCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTcc                                                        <  1:3862592/93‑1 (MQ=255)

                                  cATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCg                                                       >  1:2540504/1‑93 (MQ=255)

                                  cATTGTGTCCTCTCTTTGGTACTAAGCATGACTGGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGCCCGCAGACAGATCAGAACGCTCCg                                                       <  1:6453207/93‑1 (MQ=255)

                                    ttGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGc                                                     >  1:5987373/1‑93 (MQ=255)

                                      gtgtCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCtt                                                   >  1:1070319/1‑93 (MQ=255)

                                        gtCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTAc                                                 >  2:3967882/1‑93 (MQ=255)

                                         tCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACg                                                >  1:47371/1‑93 (MQ=255)

                                          ccTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGc                                               <  2:5732585/93‑1 (MQ=255)

                                          ccTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGc                                               >  1:2802651/1‑93 (MQ=255)

                                           ctctctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCt                                              >  1:2026495/1‑93 (MQ=255)

                                            tctctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCtt                                             <  2:2865683/93‑1 (MQ=255)

                                              tctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTaa                                           <  1:4967228/93‑1 (MQ=255)

                                               ctTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTaaa                                          <  1:5378071/93‑1 (MQ=255)

                                                tttGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACTCTCCGGCTTACGCTTAAAc                                         >  2:2157358/1‑93 (MQ=255)

                                                tttGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAc                                         >  2:6071017/1‑93 (MQ=255)

                                                tttGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAc                                         >  2:1004624/1‑93 (MQ=255)

                                                 ttGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACg                                        >  2:3002883/1‑93 (MQ=255)

                                                  tGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGt                                       >  1:4275032/1‑93 (MQ=255)

                                                   ggTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTa                                      <  2:4917641/93‑1 (MQ=255)

                                                     tACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTAcc                                    >  2:5922703/1‑93 (MQ=255)

                                                     tACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTAcc                                    <  2:2423302/93‑1 (MQ=255)

                                                     tACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTAcc                                    <  2:4997212/93‑1 (MQ=255)

                                                      aCTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCt                                   <  1:4824275/93‑1 (MQ=255)

                                                       cTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCtt                                  >  1:4375827/1‑93 (MQ=255)

                                                         aaGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTcc                                <  2:1774876/93‑1 (MQ=255)

                                                          aGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCa                               >  1:2474967/1‑93 (MQ=255)

                                                          aGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCa                               <  2:3298474/93‑1 (MQ=255)

                                                          aGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCa                               >  2:3799839/1‑93 (MQ=255)

                                                           gCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCAt                              >  1:4082340/1‑93 (MQ=255)

                                                            cTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCAtt                             >  1:2689484/1‑92 (MQ=255)

                                                             tttACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCt                            >  2:545824/1‑93 (MQ=255)

                                                              ttACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCATCCATCtt                           <  2:6322199/93‑1 (MQ=255)

                                                                 cTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGcc                        <  1:2915876/93‑1 (MQ=255)

                                                                 cTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGcc                        >  1:5676283/1‑93 (MQ=255)

                                                                  ttGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCa                       >  2:4450561/1‑93 (MQ=255)

                                                                  ttGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCa                       <  1:272408/93‑1 (MQ=255)

                                                                  ttGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCa                       <  1:2625504/93‑1 (MQ=255)

                                                                  ttGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCa                       <  1:169904/93‑1 (MQ=255)

                                                                       gTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATc                  >  1:377097/1‑93 (MQ=255)

                                                                       gTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATc                  >  2:5831821/1‑93 (MQ=255)

                                                                        tAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCa                 <  2:2018238/93‑1 (MQ=255)

                                                                         aaaGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCaa                <  2:801911/93‑1 (MQ=255)

                                                                         aaaGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCaa                <  2:3268376/93‑1 (MQ=255)

                                                                          aaGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAAc               >  1:3380144/1‑93 (MQ=255)

                                                                            gCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACtt             >  1:1313028/1‑93 (MQ=255)

                                                                              tCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcc           >  1:2782017/1‑93 (MQ=255)

                                                                              tCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcc           <  2:5242028/93‑1 (MQ=255)

                                                                              tCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcc           >  1:3665016/1‑93 (MQ=255)

                                                                              tCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcc           <  2:3382337/93‑1 (MQ=255)

                                                                               cgacgaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTcca          <  1:5597145/93‑1 (MQ=255)

                                                                                gacgaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccag         >  1:4169705/1‑93 (MQ=255)

                                                                                   gaTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccagcca      >  1:85818/1‑93 (MQ=255)

                                                                                    aTCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTccagccag     >  1:6251090/1‑93 (MQ=255)

                                                                                      cAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGt   <  1:1505631/93‑1 (MQ=255)

                                                                                      cAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGt   >  2:4508434/1‑93 (MQ=255)

                                                                                       aGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGtt  >  2:4790921/1‑93 (MQ=255)

                                                                                       aGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGtt  <  1:4175665/93‑1 (MQ=255)

GGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGTGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTT  >  NC_000913/3438630‑3438809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGTGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTGGCT  >  NC_000913/3438628‑3438813

CAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCG                                                                                              <  SRR4302537.1909745/94‑1 (MQ=60)

CAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCG                                                                                              <  SRR4302537.1363178/94‑1 (MQ=60)

 AGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGT                                                                                             >  SRR4302537.419969/1‑94 (MQ=60)

  GGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTT                                                                                            <  SRR4302537.3596902/94‑1 (MQ=60)

   GCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTC                                                                                           <  SRR4302537.4176906/94‑1 (MQ=60)

      CGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTT                                                                                        <  SRR4302537.3554168/94‑1 (MQ=60)

       GGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTA                                                                                       >  SRR4302537.1863730/1‑94 (MQ=60)

       GGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTA                                                                                       >  SRR4302537.4742305/1‑94 (MQ=60)

        GTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAA                                                                                      >  SRR4302537.2019397/1‑94 (MQ=60)

        GTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAA                                                                                      <  SRR4302537.5948343/94‑1 (MQ=60)

        GTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAA                                                                                      <  SRR4302537.1455682/94‑1 (MQ=60)

          TTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATG                                                                                    >  SRR4302537.44672/1‑94 (MQ=60)

           TTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGT                                                                                   <  SRR4302537.750895/94‑1 (MQ=60)

             AGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCC                                                                                 >  SRR4302537.2857301/1‑94 (MQ=60)

             AGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCC                                                                                 >  SRR4302537.3891794/1‑94 (MQ=60)

              GAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCG                                                                                <  SRR4302537.3151056/94‑1 (MQ=60)

              GAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCG                                                                                <  SRR4302537.3099293/94‑1 (MQ=60)

              GAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCG                                                                                <  SRR4302537.5333370/94‑1 (MQ=60)

              GAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCG                                                                                <  SRR4302537.728373/94‑1 (MQ=60)

              GAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCG                                                                                <  SRR4302537.780071/94‑1 (MQ=60)

               AAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGC                                                                               >  SRR4302537.4140964/1‑94 (MQ=60)

                ATCTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCA                                                                              >  SRR4302537.6136382/1‑94 (MQ=60)

                AACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCA                                                                              >  SRR4302537.4632446/1‑94 (MQ=60)

                AACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCA                                                                              <  SRR4302537.5325097/94‑1 (MQ=60)

                AACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCA                                                                              >  SRR4302537.722661/1‑94 (MQ=60)

                 ACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAG                                                                             >  SRR4302537.1619177/1‑94 (MQ=60)

                  CTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGA                                                                            >  SRR4302537.2175344/1‑94 (MQ=60)

                  CTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGA                                                                            >  SRR4302537.2002100/1‑94 (MQ=60)

                   TCTGTCACAGAACCCTGCATTTTGTCCTCTCTTTGGTACTAAGCTTTTCTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGAC                                                                           <  SRR4302537.3058136/94‑1 (MQ=60)

                   TCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGAC                                                                           <  SRR4302537.4694704/94‑1 (MQ=60)

                      GTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGA                                                                        >  SRR4302537.2125014/1‑94 (MQ=60)

                       TCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGAT                                                                       <  SRR4302537.565954/94‑1 (MQ=60)

                       TCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGAT                                                                       >  SRR4302537.3776139/1‑94 (MQ=60)

                        CACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATC                                                                      <  SRR4302537.4502855/94‑1 (MQ=60)

                        CACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATC                                                                      <  SRR4302537.5098631/94‑1 (MQ=60)

                         ACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCA                                                                     >  SRR4302537.5203711/1‑94 (MQ=60)

                          CAGAACCCTGCATTGTGTTCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAG                                                                    <  SRR4302537.1029625/94‑1 (MQ=60)

                          CAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAG                                                                    <  SRR4302537.4610534/94‑1 (MQ=60)

                          CAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAG                                                                    <  SRR4302537.5119564/94‑1 (MQ=60)

                           AGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGA                                                                   >  SRR4302537.2734707/1‑94 (MQ=60)

                           AGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGA                                                                   <  SRR4302537.6764/94‑1 (MQ=60)

                            GAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAA                                                                  <  SRR4302537.619626/94‑1 (MQ=60)

                             ACCCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAAC                                                                 <  SRR4302537.1915197/94‑1 (MQ=60)

                              ACCTTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACG                                                                <  SRR4302537.1683754/94‑1 (MQ=60)

                              ACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACG                                                                <  SRR4302537.2969721/94‑1 (MQ=60)

                               CCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGC                                                               >  SRR4302537.2740383/1‑94 (MQ=60)

                               CCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGC                                                               >  SRR4302537.3342305/1‑94 (MQ=60)

                               CCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGC                                                               >  SRR4302537.356250/1‑94 (MQ=60)

                               CCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGC                                                               >  SRR4302537.3398804/1‑94 (MQ=60)

                                 CTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTC                                                             >  SRR4302537.3787635/1‑94 (MQ=60)

                                 CTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTC                                                             >  SRR4302537.3121215/1‑94 (MQ=60)

                                 CTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTC                                                             >  SRR4302537.6374542/1‑94 (MQ=60)

                                 CTGCATTGTGTCCTCTCTTTGGGACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTC                                                             >  SRR4302537.203352/1‑94 (MQ=60)

                                  TGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCC                                                            >  SRR4302537.1082962/1‑94 (MQ=60)

                                  TGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCC                                                            <  SRR4302537.6319931/94‑1 (MQ=60)

                                   GCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCG                                                           >  SRR4302537.2558318/1‑94 (MQ=60)

                                   GCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCG                                                           <  SRR4302537.6505973/94‑1 (MQ=60)

                                   GCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCG                                                           <  SRR4302537.3762340/94‑1 (MQ=60)

                                   GCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCG                                                           <  SRR4302537.4065038/94‑1 (MQ=60)

                                   GCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCG                                                           <  SRR4302537.3889629/94‑1 (MQ=60)

                                   GCATTGTGTCCTCTCTTTGGAACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCG                                                           >  SRR4302537.2602714/1‑94 (MQ=60)

                                    CATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGG                                                          >  SRR4302537.4246371/1‑94 (MQ=60)

                                    CATTGTGTCCTCTCTTTGGTACTAAGCATGACTGGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGCCCGCAGACAGATCAGAACGCTCCGG                                                          <  SRR4302537.6496956/94‑1 (MQ=60)

                                     ATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGC                                                         >  SRR4302537.6028491/1‑94 (MQ=60)

                                      TTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCT                                                        <  SRR4302537.4465126/94‑1 (MQ=60)

                                       TGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTT                                                       <  SRR4302537.3370825/94‑1 (MQ=60)

                                       TGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTT                                                       >  SRR4302537.1077700/1‑94 (MQ=60)

                                         TGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTAC                                                     <  SRR4302537.2174420/94‑1 (MQ=60)

                                          GTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACG                                                    <  SRR4302537.5521011/94‑1 (MQ=60)

                                          GTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACG                                                    >  SRR4302537.2375200/1‑94 (MQ=60)

                                          GTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACG                                                    >  SRR4302537.6205347/1‑94 (MQ=60)

                                          GTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACG                                                    >  SRR4302537.47725/1‑94 (MQ=60)

                                           TCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGC                                                   >  SRR4302537.1037641/1‑94 (MQ=60)

                                           TCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGC                                                   >  SRR4302537.2822242/1‑94 (MQ=60)

                                            CCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCT                                                  >  SRR4302537.2040630/1‑94 (MQ=60)

                                             CTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTT                                                 >  SRR4302537.4910610/1‑94 (MQ=60)

                                               CTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAA                                               >  SRR4302537.3510873/1‑94 (MQ=60)

                                                TCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAA                                              <  SRR4302537.5001464/94‑1 (MQ=60)

                                                 CTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAC                                             <  SRR4302537.5414860/94‑1 (MQ=60)

                                                 CTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAC                                             <  SRR4302537.5355545/94‑1 (MQ=60)

                                                 CTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAC                                             >  SRR4302537.943940/1‑94 (MQ=60)

                                                 CTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAAC                                             >  SRR4302537.1921712/1‑94 (MQ=60)

                                                   TTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGT                                           >  SRR4302537.4304743/1‑94 (MQ=60)

                                                     GCTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTAC                                         <  SRR4302537.6262953/94‑1 (MQ=60)

                                                      GTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACC                                        >  SRR4302537.2686521/1‑94 (MQ=60)

                                                        ACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTT                                      <  SRR4302537.4857596/94‑1 (MQ=60)

                                                        ACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTT                                      >  SRR4302537.4406047/1‑94 (MQ=60)

                                                          TAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCC                                    >  SRR4302537.2421715/1‑94 (MQ=60)

                                                          TAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCC                                    >  SRR4302537.4839078/1‑94 (MQ=60)

                                                          TAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCC                                    <  SRR4302537.4817169/94‑1 (MQ=60)

                                                           AAGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCA                                   >  SRR4302537.2492366/1‑94 (MQ=60)

                                                            AGCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCAT                                  >  SRR4302537.4110840/1‑94 (MQ=60)

                                                             GCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATT                                 >  SRR4302537.2708253/1‑94 (MQ=60)

                                                             GCTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATC                                 >  SRR4302537.2633349/1‑94 (MQ=60)

                                                              CTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATGAGAACGCTCCGGCTTACGCTTAAACGTAGCTTCCATCT                                >  SRR4302537.2525123/1‑94 (MQ=60)

                                                              CTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCT                                >  SRR4302537.4329072/1‑94 (MQ=60)

                                                              CTTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCT                                <  SRR4302537.2769628/94‑1 (MQ=60)

                                                               TTTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTT                               <  SRR4302537.3818102/94‑1 (MQ=60)

                                                                TTACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTG                              <  SRR4302537.6361044/94‑1 (MQ=60)

                                                                 TACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGC                             >  SRR4302537.2919513/1‑94 (MQ=60)

                                                                  ACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCC                            >  SRR4302537.5715120/1‑94 (MQ=60)

                                                                  ACTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCC                            <  SRR4302537.5649265/94‑1 (MQ=60)

                                                                   CTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCA                           <  SRR4302537.2936359/94‑1 (MQ=60)

                                                                   CTTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCA                           >  SRR4302537.2803042/1‑94 (MQ=60)

                                                                    TTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAG                          <  SRR4302537.171117/94‑1 (MQ=60)

                                                                    TTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAG                          <  SRR4302537.2643899/94‑1 (MQ=60)

                                                                    TTGGAGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAG                          <  SRR4302537.274324/94‑1 (MQ=60)

                                                                        AGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATC                      <  SRR4302537.1288068/94‑1 (MQ=60)

                                                                        AGTAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATC                      >  SRR4302537.379712/1‑94 (MQ=60)

                                                                          TAAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAA                    <  SRR4302537.3318034/94‑1 (MQ=60)

                                                                           AAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAAC                   <  SRR4302537.3610112/94‑1 (MQ=60)

                                                                           AAAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAAC                   >  SRR4302537.3404095/1‑94 (MQ=60)

                                                                            AAGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACT                  >  SRR4302537.4301789/1‑94 (MQ=60)

                                                                             AGCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTT                 >  SRR4302537.1322168/1‑94 (MQ=60)

                                                                              GCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTC                >  SRR4302537.689169/1‑94 (MQ=60)

                                                                              GCTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTC                >  SRR4302537.2775739/1‑94 (MQ=60)

                                                                               CTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCC               <  SRR4302537.5105863/94‑1 (MQ=60)

                                                                               CTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCC               >  SRR4302537.2801463/1‑94 (MQ=60)

                                                                               CTCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCC               >  SRR4302537.3690815/1‑94 (MQ=60)

                                                                                TCGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCA              <  SRR4302537.2097393/94‑1 (MQ=60)

                                                                                 CGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAG             <  SRR4302537.583787/94‑1 (MQ=60)

                                                                                 CGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAG             >  SRR4302537.4198828/1‑94 (MQ=60)

                                                                                 CGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAG             <  SRR4302537.5635414/94‑1 (MQ=60)

                                                                                 CGACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAG             <  SRR4302537.3597659/94‑1 (MQ=60)

                                                                                  GACGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGC            <  SRR4302537.1522465/94‑1 (MQ=60)

                                                                                    CGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCA          >  SRR4302537.86443/1‑94 (MQ=60)

                                                                                    CGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCA          >  SRR4302537.1590730/1‑94 (MQ=60)

                                                                                    CGATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCA          <  SRR4302537.2059382/94‑1 (MQ=60)

                                                                                     GATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAG         >  SRR4302537.6294033/1‑94 (MQ=60)

                                                                                     GATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAG         >  SRR4302537.1842101/1‑94 (MQ=60)

                                                                                      ATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGG        >  SRR4302537.37071/1‑94 (MQ=60)

                                                                                      ATCAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGG        >  SRR4302537.3535336/1‑94 (MQ=60)

                                                                                        CAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTT      <  SRR4302537.6299541/94‑1 (MQ=60)

                                                                                        CAGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTT      <  SRR4302537.1516134/94‑1 (MQ=60)

                                                                                         AGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTG     >  SRR4302537.3568078/1‑94 (MQ=60)

                                                                                         AGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTG     >  SRR4302537.3095505/1‑94 (MQ=60)

                                                                                         AGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTG     >  SRR4302537.2194325/1‑94 (MQ=60)

                                                                                         AGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTG     >  SRR4302537.2486578/1‑94 (MQ=60)

                                                                                         AGGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTG     <  SRR4302537.4204818/94‑1 (MQ=60)

                                                                                          GGCGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTGG    <  SRR4302537.3459445/94‑1 (MQ=60)

                                                                                            CGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTGCATCTTGCCAGCATCAACTTCCAGCCAGGGTGGCT  >  SRR4302537.6016005/1‑94 (MQ=60)

                                                                                            CGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTGGCT  >  SRR4302537.1933775/1‑94 (MQ=60)

CAGGCGCGGTTTTAGAAACTCTGTCACAGAACCCTGCATTGTGTCCTCTCTTTGGTACTAAGCTTTACTTGGAGTAAAGCTCGACGATCAGGTGTTCGTTAATGTCCGCAGACAGATCAGAACGCTCCGGCTTACGCTTAAACGTACCTTCCATCTTGCCAGCATCAACTTCCAGCCAGGTTGGCT  >  NC_000913/3438628‑3438813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`