Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,610,376	T→C	V294A (GTG→GCG)	b3474 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,610,376	0	T	C	100.0%	925.8 / NA	267	V294A (GTG→GCG)	b3474	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/136); total (131/136)

Only 100 of 279 total aligned reads displayed.

TCGGCGCATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGTGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCT  >  NC_000913/3610286‑3610465

   gcgcATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAt                                                                                      <  1:5215985/93‑1 (MQ=255)

     gcATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAttt                                                                                    >  1:4737317/1‑93 (MQ=255)

     gcATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAttt                                                                                    >  1:128050/1‑93 (MQ=255)

      cATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttt                                                                                   >  1:4847976/1‑92 (MQ=255)

      cATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttc                                                                                   <  2:3930230/93‑1 (MQ=255)

      cATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttc                                                                                   >  2:4602843/1‑93 (MQ=255)

      cATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttc                                                                                   >  1:6152808/1‑93 (MQ=255)

      cATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttc                                                                                   >  2:5745037/1‑93 (MQ=255)

        ttGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttctt                                                                                 <  2:5555789/93‑1 (MQ=255)

        ttGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttctt                                                                                 <  2:6403671/93‑1 (MQ=255)

         tGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttcttt                                                                                >  2:931869/1‑93 (MQ=255)

         tGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttcttt                                                                                <  1:4410972/93‑1 (MQ=255)

         tGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTAtttcttt                                                                                >  2:1460933/1‑93 (MQ=255)

           tttttAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCa                                                                              >  2:3733828/1‑93 (MQ=255)

             tttAGTGGTCCCTTTGGTCATTGGCAATATTTTAAAACCACGGATGGTGGGCCATTGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCAtt                                                                            <  1:1955482/93‑1 (MQ=255)

             tttAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCAtt                                                                            <  1:3760832/93‑1 (MQ=255)

              ttAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTg                                                                           <  2:1784386/93‑1 (MQ=255)

              ttAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTg                                                                           <  2:1042566/93‑1 (MQ=255)

               tAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGt                                                                          <  2:5476748/93‑1 (MQ=255)

                aGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGtt                                                                         <  1:3614469/93‑1 (MQ=255)

                    gTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAAtt                                                                     <  2:2143282/93‑1 (MQ=255)

                    gTCCATATGGGCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAAtt                                                                     <  2:4987974/93‑1 (MQ=255)

                     tCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAAttt                                                                    <  2:1692216/93‑1 (MQ=255)

                      ccATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTg                                                                   <  2:5086719/93‑1 (MQ=255)

                       cATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTgg                                                                  >  2:2613477/1‑93 (MQ=255)

                         tatGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTgggg                                                                >  1:5435493/1‑93 (MQ=255)

                         tatGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTgggg                                                                >  1:1304595/1‑93 (MQ=255)

                          atGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCTCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGa                                                               <  2:6013033/93‑1 (MQ=255)

                           tGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGAt                                                              <  1:706093/93‑1 (MQ=255)

                            gttCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATg                                                             <  1:2597576/91‑1 (MQ=255)

                            ggTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATg                                                             <  1:6190863/93‑1 (MQ=255)

                            ggTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATg                                                             <  1:1464413/93‑1 (MQ=255)

                             gTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATgg                                                            <  2:347773/93‑1 (MQ=255)

                              tCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGTGGATggt                                                           >  1:3354719/1‑92 (MQ=255)

                              tCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgc                                                           <  1:3190094/93‑1 (MQ=255)

                              tCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgc                                                           <  1:6241669/93‑1 (MQ=255)

                               cATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgct                                                          <  1:2421210/93‑1 (MQ=255)

                               cATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgct                                                          >  1:4021814/1‑93 (MQ=255)

                               cATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgct                                                          <  2:4659552/93‑1 (MQ=255)

                                 tCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgctgc                                                        <  2:1317714/93‑1 (MQ=255)

                                 tCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgctgc                                                        >  1:1805251/1‑93 (MQ=255)

                                  cGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGgctgct                                                       >  2:1937063/1‑93 (MQ=255)

                                    gCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTGTTTCTTTCATTGTTAATTTGGGGATGGCTGCTCg                                                     >  2:402628/1‑93 (MQ=255)

                                    gCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCg                                                     >  1:1008052/1‑93 (MQ=255)

                                       atatTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGcc                                                  <  1:3804550/93‑1 (MQ=255)

                                       atatTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGcc                                                  <  2:1859341/93‑1 (MQ=255)

                                       atatTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGcc                                                  <  1:4086728/93‑1 (MQ=255)

                                       atatTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGcc                                                  >  2:5695575/1‑93 (MQ=255)

                                        tatTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGccc                                                 >  1:2994920/1‑93 (MQ=255)

                                          ttttAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCgg                                               >  1:412612/1‑93 (MQ=255)

                                            ttAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTa                                             >  1:4919603/1‑93 (MQ=255)

                                            ttAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTa                                             >  2:4752628/1‑93 (MQ=255)

                                              aGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAgg                                           >  1:2254694/1‑93 (MQ=255)

                                               gAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAggg                                          >  1:206552/1‑93 (MQ=255)

                                               gAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAggg                                          >  1:4161240/1‑93 (MQ=255)

                                                aaCCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGa                                         >  2:6143685/1‑93 (MQ=255)

                                                aaCCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGa                                         <  2:4899483/93‑1 (MQ=255)

                                                  ccACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATg                                       <  2:5053547/93‑1 (MQ=255)

                                                   cACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGc                                      >  1:6006634/1‑93 (MQ=255)

                                                   cACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGc                                      >  1:5971189/1‑93 (MQ=255)

                                                   cACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGc                                      <  1:160817/93‑1 (MQ=255)

                                                     cGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGTTa                                    <  2:5248772/93‑1 (MQ=255)

                                                     cGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTa                                    >  2:3005745/1‑93 (MQ=255)

                                                      ggATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTAc                                   <  2:689909/93‑1 (MQ=255)

                                                        atgatgGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACtt                                 <  1:3243271/93‑1 (MQ=255)

                                                        atgatgGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACtt                                 <  2:2707997/93‑1 (MQ=255)

                                                         tgatgGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACttt                                >  2:6172761/1‑93 (MQ=255)

                                                         tgatgGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACttt                                <  1:4630245/93‑1 (MQ=255)

                                                           atgGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCg                              >  2:830850/1‑93 (MQ=255)

                                                            tgGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCgg                             >  1:4316522/1‑93 (MQ=255)

                                                            taggCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCgg                             >  2:3669564/3‑93 (MQ=255)

                                                              ggCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTg                           <  2:1068315/93‑1 (MQ=255)

                                                                 cATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCa                        <  1:1182345/93‑1 (MQ=255)

                                                                 cATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCa                        <  2:1174725/93‑1 (MQ=255)

                                                                 cATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCa                        >  2:1291878/1‑93 (MQ=255)

                                                                  aTCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCAt                       <  1:1426945/93‑1 (MQ=255)

                                                                   tCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCAtt                      >  1:6434613/1‑93 (MQ=255)

                                                                   tCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCAtt                      >  1:1746237/1‑93 (MQ=255)

                                                                    cGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTa                     <  2:4158897/93‑1 (MQ=255)

                                                                    cGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTa                     <  2:2196054/93‑1 (MQ=255)

                                                                    cGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTa                     >  1:2724004/1‑93 (MQ=255)

                                                                     gCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTaa                    >  2:1565389/1‑93 (MQ=255)

                                                                      ccTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAAc                   <  1:452761/93‑1 (MQ=255)

                                                                        tGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCa                 >  2:422427/1‑93 (MQ=255)

                                                                        tGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCa                 <  2:247487/93‑1 (MQ=255)

                                                                         ggggATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAg                >  1:5224667/1‑93 (MQ=255)

                                                                           ggATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCg              <  1:3478009/93‑1 (MQ=255)

                                                                               gTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCgtgtg          <  2:3218510/93‑1 (MQ=255)

                                                                               gTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCgtgtg          <  2:2952035/93‑1 (MQ=255)

                                                                               gTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCgtgtg          >  2:3829733/1‑93 (MQ=255)

                                                                               gTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCgtgtg          <  1:1885015/93‑1 (MQ=255)

                                                                               gTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCgtgtg          >  1:250520/1‑93 (MQ=255)

                                                                               gTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCgtgtg          <  2:1779574/93‑1 (MQ=255)

                                                                                tCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCgtgtgt         <  1:2831713/93‑1 (MQ=255)

                                                                                    ccaTGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTaaaa     >  2:3388519/1‑93 (MQ=255)

                                                                                    ccaTGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTaaaa     <  2:2342523/93‑1 (MQ=255)

                                                                                     caTGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAAt    >  2:2813939/1‑93 (MQ=255)

                                                                                      aTGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATc   >  1:5047119/1‑93 (MQ=255)

                                                                                      aTGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATc   <  1:5723391/93‑1 (MQ=255)

                                                                                       tggcggTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCt  <  2:5862196/93‑1 (MQ=255)

TCGGCGCATTGTTTTTAGTGGTCCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGTGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCT  >  NC_000913/3610286‑3610465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGTGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCTGGAT  >  NC_000913/3610284‑3610469

GGTCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCGCCATGGCG                                                                                              >  SRR4302537.3083813/1‑94 (MQ=60)

GGTCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCG                                                                                              <  SRR4302537.4628658/94‑1 (MQ=60)

GGTCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCG                                                                                              <  SRR4302537.85015/94‑1 (MQ=60)

GGTCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCG                                                                                              <  SRR4302537.2881112/94‑1 (MQ=60)

GGTCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCG                                                                                              <  SRR4302537.580483/94‑1 (MQ=60)

  TCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGT                                                                                            <  SRR4302537.4775548/94‑1 (MQ=60)

  TCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGT                                                                                            <  SRR4302537.1312109/94‑1 (MQ=60)

  GCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGT                                                                                            <  SRR4302537.3443965/94‑1 (MQ=60)

     GCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATT                                                                                         <  SRR4302537.5251853/94‑1 (MQ=60)

     GCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATT                                                                                         <  SRR4302537.6421280/94‑1 (MQ=60)

      CGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTT                                                                                        <  SRR4302537.710743/94‑1 (MQ=60)

      CGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTT                                                                                        >  SRR4302537.1853772/1‑94 (MQ=60)

      CGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTT                                                                                        >  SRR4302537.128964/1‑94 (MQ=60)

      CGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTT                                                                                        >  SRR4302537.4770064/1‑94 (MQ=60)

      CGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTT                                                                                        >  SRR4302537.3808729/1‑94 (MQ=60)

      CGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTT                                                                                        >  SRR4302537.4071790/1‑94 (MQ=60)

       GCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTT                                                                                       >  SRR4302537.4881432/1‑94 (MQ=60)

       GCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTC                                                                                       >  SRR4302537.6195134/1‑94 (MQ=60)

        CATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCT                                                                                      >  SRR4302537.2726436/1‑94 (MQ=60)

          TTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTT                                                                                    <  SRR4302537.4442836/94‑1 (MQ=60)

           TGTTTTTGATGGTGCCATATGGTTATCGGCAATATTTTAGACCCACGGATGGTGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTT                                                                                    <  SRR4302537.4915487/94‑1 (MQ=60)

           TGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTC                                                                                   <  SRR4302537.4441408/94‑1 (MQ=60)

            GTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCA                                                                                  >  SRR4302537.1830297/1‑94 (MQ=60)

            GTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCA                                                                                  <  SRR4302537.5741385/94‑1 (MQ=60)

             TTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCAT                                                                                 >  SRR4302537.6476108/1‑94 (MQ=60)

              TTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATT                                                                                <  SRR4302537.1315313/94‑1 (MQ=60)

               TTTAGTGGT‑CCCTTTGGTCATTGGCAATATTTTAAAACCACGGATGGTGGGCCATTGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTG                                                                               <  SRR4302537.1969082/94‑1 (MQ=60)

               TTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTG                                                                               <  SRR4302537.1374782/94‑1 (MQ=60)

               TTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTG                                                                               <  SRR4302537.1291727/94‑1 (MQ=60)

               TTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTG                                                                               <  SRR4302537.3787235/94‑1 (MQ=60)

                TTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGT                                                                              <  SRR4302537.2096486/94‑1 (MQ=60)

                 TAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTT                                                                             <  SRR4302537.5400845/94‑1 (MQ=60)

                  AGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTA                                                                            >  SRR4302537.4277918/1‑94 (MQ=60)

                  AGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTA                                                                            <  SRR4302537.3639948/94‑1 (MQ=60)

                      GT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTT                                                                        >  SRR4302537.6215980/1‑94 (MQ=60)

                      GT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTT                                                                        <  SRR4302537.1285123/94‑1 (MQ=60)

                      GT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTT                                                                        >  SRR4302537.4939791/1‑94 (MQ=60)

                      GT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTT                                                                        <  SRR4302537.5942597/94‑1 (MQ=60)

                       T‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTG                                                                       >  SRR4302537.1739690/1‑94 (MQ=60)

                          CATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGG                                                                     <  SRR4302537.997029/94‑1 (MQ=60)

                           ATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGG                                                                    >  SRR4302537.5472569/1‑94 (MQ=60)

                           ATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGG                                                                    >  SRR4302537.1313664/1‑94 (MQ=60)

                             ATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGAT                                                                  >  SRR4302537.4416791/1‑94 (MQ=60)

                              TGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATG                                                                 <  SRR4302537.710922/94‑1 (MQ=60)

                              TGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATG                                                                 <  SRR4302537.4644328/94‑1 (MQ=60)

                               GTTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGG                                                                <  SRR4302537.2615745/94‑1 (MQ=60)

                               GGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGG                                                                <  SRR4302537.6233514/94‑1 (MQ=60)

                               GGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGG                                                                <  SRR4302537.1474602/94‑1 (MQ=60)

                                GTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGTGGATGGT                                                               >  SRR4302537.3378480/1‑94 (MQ=60)

                                GTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGT                                                               >  SRR4302537.4236284/1‑94 (MQ=60)

                                GTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGC                                                               <  SRR4302537.4715296/94‑1 (MQ=60)

                                 TCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCT                                                              <  SRR4302537.6113693/94‑1 (MQ=60)

                                 TCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCT                                                              >  SRR4302537.4049973/1‑94 (MQ=60)

                                 TCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCT                                                              <  SRR4302537.6284572/94‑1 (MQ=60)

                                 TCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCT                                                              <  SRR4302537.3212529/94‑1 (MQ=60)

                                  CATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTG                                                             <  SRR4302537.2438269/94‑1 (MQ=60)

                                   ATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGC                                                            >  SRR4302537.1817847/1‑94 (MQ=60)

                                   ATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGC                                                            >  SRR4302537.6274962/1‑94 (MQ=60)

                                    TCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCT                                                           <  SRR4302537.1091107/94‑1 (MQ=60)

                                    TCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCT                                                           >  SRR4302537.1977354/1‑94 (MQ=60)

                                     CGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTC                                                          >  SRR4302537.1932582/1‑94 (MQ=60)

                                     CGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTC                                                          >  SRR4302537.1468651/1‑94 (MQ=60)

                                      GGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCG                                                         >  SRR4302537.1015008/1‑94 (MQ=60)

                                      GGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCG                                                         >  SRR4302537.5126541/1‑94 (MQ=60)

                                       GCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGG                                                        >  SRR4302537.3031909/1‑94 (MQ=60)

                                        CAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGC                                                       >  SRR4302537.4124609/1‑94 (MQ=60)

                                         AATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCC                                                      >  SRR4302537.1501549/1‑94 (MQ=60)

                                          ATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCC                                                     >  SRR4302537.3015809/1‑94 (MQ=60)

                                          ATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCC                                                     <  SRR4302537.3831232/94‑1 (MQ=60)

                                          ATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCC                                                     <  SRR4302537.6006801/94‑1 (MQ=60)

                                          ATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCC                                                     <  SRR4302537.3983968/94‑1 (MQ=60)

                                          ATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCC                                                     <  SRR4302537.4115265/94‑1 (MQ=60)

                                           TATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCG                                                    <  SRR4302537.5255050/94‑1 (MQ=60)

                                            ATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGG                                                   >  SRR4302537.415467/1‑94 (MQ=60)

                                             TTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGT                                                  <  SRR4302537.3515371/94‑1 (MQ=60)

                                              TTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTA                                                 >  SRR4302537.4953539/1‑94 (MQ=60)

                                               TTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAG                                                >  SRR4302537.2452422/1‑94 (MQ=60)

                                               TTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAG                                                <  SRR4302537.5063124/94‑1 (MQ=60)

                                                TAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGG                                               >  SRR4302537.3940533/1‑94 (MQ=60)

                                                TAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGG                                               >  SRR4302537.2270609/1‑94 (MQ=60)

                                                 AGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGG                                              >  SRR4302537.208033/1‑94 (MQ=60)

                                                 AGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGG                                              >  SRR4302537.3211894/1‑94 (MQ=60)

                                                 AGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGG                                              >  SRR4302537.4190301/1‑94 (MQ=60)

                                                  GAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGT                                             >  SRR4302537.173892/1‑94 (MQ=60)

                                                  GAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGA                                             >  SRR4302537.3001569/1‑94 (MQ=60)

                                                   AACCACGGGTGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCGTAGTGAATATGGGGATGGCTGCTCTGCCCGGTAGGGAG                                            >  SRR4302537.3907271/1‑94 (MQ=60)

                                                   AACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGAT                                            >  SRR4302537.4086564/1‑94 (MQ=60)

                                                   AACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGAT                                            >  SRR4302537.3737653/1‑94 (MQ=60)

                                                   AACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGAT                                            >  SRR4302537.5520033/1‑94 (MQ=60)

                                                   AACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGAT                                            >  SRR4302537.2829664/1‑94 (MQ=60)

                                                    ACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATG                                           <  SRR4302537.2400243/94‑1 (MQ=60)

                                                     CCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGC                                          >  SRR4302537.6012174/1‑94 (MQ=60)

                                                     CCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGC                                          >  SRR4302537.4499584/1‑94 (MQ=60)

                                                     CCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGC                                          >  SRR4302537.6047903/1‑94 (MQ=60)

                                                      CACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCT                                         <  SRR4302537.6014472/94‑1 (MQ=60)

                                                      CACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCT                                         <  SRR4302537.161963/94‑1 (MQ=60)

                                                         GGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACT                                      >  SRR4302537.3258351/1‑94 (MQ=60)

                                                         GGATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACT                                      >  SRR4302537.2533243/1‑94 (MQ=60)

                                                           ATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTT                                    <  SRR4302537.3266130/94‑1 (MQ=60)

                                                           ATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTT                                    >  SRR4302537.1606682/1‑94 (MQ=60)

                                                           ATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTT                                    >  SRR4302537.3826870/1‑94 (MQ=60)

                                                           ATGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTT                                    >  SRR4302537.6215150/1‑94 (MQ=60)

                                                            TGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTC                                   <  SRR4302537.4662278/94‑1 (MQ=60)

                                                            TGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTC                                   <  SRR4302537.3588652/94‑1 (MQ=60)

                                                            TGATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTC                                   <  SRR4302537.1974979/94‑1 (MQ=60)

                                                             GATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCG                                  >  SRR4302537.2328540/1‑94 (MQ=60)

                                                             GATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCG                                  >  SRR4302537.2796521/1‑94 (MQ=60)

                                                              ATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGG                                 <  SRR4302537.3359945/94‑1 (MQ=60)

                                                              ATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGG                                 >  SRR4302537.4346532/1‑94 (MQ=60)

                                                              ATGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGG                                 >  SRR4302537.436598/1‑94 (MQ=60)

                                                               TGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGT                                <  SRR4302537.5074835/94‑1 (MQ=60)

                                                               TGGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGT                                <  SRR4302537.5348577/94‑1 (MQ=60)

                                                                GGGCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTG                               <  SRR4302537.4182011/94‑1 (MQ=60)

                                                                  GCCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCC                             >  SRR4302537.3321425/1‑94 (MQ=60)

                                                                   CCATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCA                            >  SRR4302537.4601400/1‑94 (MQ=60)

                                                                    CATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCAT                           <  SRR4302537.1190569/94‑1 (MQ=60)

                                                                     ATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATT                          <  SRR4302537.1436878/94‑1 (MQ=60)

                                                                     ATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATT                          >  SRR4302537.6478308/1‑94 (MQ=60)

                                                                     ATCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATT                          >  SRR4302537.1758417/1‑94 (MQ=60)

                                                                      TCGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTA                         >  SRR4302537.2743029/1‑94 (MQ=60)

                                                                       CGCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAA                        >  SRR4302537.2990208/1‑94 (MQ=60)

                                                                        GCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAAC                       <  SRR4302537.5086734/94‑1 (MQ=60)

                                                                        GCCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAAC                       <  SRR4302537.4119085/94‑1 (MQ=60)

                                                                         CCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACC                      <  SRR4302537.2467183/94‑1 (MQ=60)

                                                                         CCTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACC                      <  SRR4302537.455895/94‑1 (MQ=60)

                                                                          CTGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCA                     <  SRR4302537.1812922/94‑1 (MQ=60)

                                                                           TGGGGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAG                    >  SRR4302537.5260596/1‑94 (MQ=60)

                                                                              GGATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGT                 <  SRR4302537.3502620/94‑1 (MQ=60)

                                                                                ATGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATTCTACTTTCGGTGCCATTAACCAGCGTGT               >  SRR4302537.17884/1‑94 (MQ=60)

                                                                                 TGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTG              <  SRR4302537.6189981/94‑1 (MQ=60)

                                                                                 TGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTG              <  SRR4302537.2696481/94‑1 (MQ=60)

                                                                                 TGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTG              <  SRR4302537.1268310/94‑1 (MQ=60)

                                                                                 TGTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTG              >  SRR4302537.252298/1‑94 (MQ=60)

                                                                                  GTCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGT             <  SRR4302537.1898124/94‑1 (MQ=60)

                                                                                   TCCACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTA            <  SRR4302537.2851498/94‑1 (MQ=60)

                                                                                     CACCATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAA          >  SRR4302537.2206755/1‑94 (MQ=60)

                                                                                        CATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATC       <  SRR4302537.4803072/94‑1 (MQ=60)

                                                                                        CATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATC       >  SRR4302537.5081878/1‑94 (MQ=60)

                                                                                         ATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCT      <  SRR4302537.5762572/94‑1 (MQ=60)

                                                                                         ATGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCT      >  SRR4302537.6237676/1‑94 (MQ=60)

                                                                                          TGGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCTG     <  SRR4302537.344755/94‑1 (MQ=60)

                                                                                           GGCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCTGG    <  SRR4302537.2509790/94‑1 (MQ=60)

                                                                                            GCGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTTACCAGCGTGTGTAAAATCTGGA   >  SRR4302537.5720098/1‑94 (MQ=60)

                                                                                             CGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCTGGAT  <  SRR4302537.74742/94‑1 (MQ=60)

                                                                                             CGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCTGGAT  >  SRR4302537.4251463/1‑94 (MQ=60)

                                                                                             CGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCTGGAT  >  SRR4302537.4970281/1‑94 (MQ=60)

GGTCGGCGCATTGTTTTTAGTGGT‑CCATATGGTCATCGGCAATATTTTAGAACCACGGATGATGGGCCATCGCCTGGGGATGTCCACCATGGTGGTATTTCTTTCATTGTTAATTTGGGGATGGCTGCTCGGCCCGGTAGGGATGCTACTTTCGGTGCCATTAACCAGCGTGTGTAAAATCTGGAT  >  NC_000913/3610284‑3610469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`