Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,627,142 +G intergenic (‑24/+23) yhiH ← / ← yhiI putative ATP‑binding component of a transport system, fragment 1/putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,627,1401.G100.0% 777.6 / NA 224intergenic (‑22/+25)yhiH/yhiIputative ATP‑binding component of a transport system, fragment 1/putative membrane protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (116/108);  total (116/108)

Only 100 of 262 total aligned reads displayed.

ACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCA  >  NC_000913/3627048‑3627227
                                                                                             |                                                                                       
aCCATACAGCGGGCAGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGc                                                                                          <  1:3153746/93‑1 (MQ=255)
 ccATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g                                                                                        >  2:1722618/1‑93 (MQ=255)
  cATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑gg                                                                                       >  2:2935302/1‑93 (MQ=255)
    tACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑ggga                                                                                     <  2:65601/93‑3 (MQ=255)
     aCAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑gggac                                                                                    <  1:2083695/93‑4 (MQ=255)
     aCAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑gggac                                                                                    <  1:3227867/93‑4 (MQ=255)
     aCAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑gggac                                                                                    >  2:3825389/1‑90 (MQ=255)
      cAGCGGGCCGGAATATCGAGAGTGATATTGTGCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑gggacg                                                                                   <  2:4286599/93‑5 (MQ=255)
          gggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGaa                                                                                <  2:1995532/93‑1 (MQ=255)
           ggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAc                                                                               >  1:2997886/1‑93 (MQ=255)
            gCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACCGGCGGGACGGGAAcc                                                                              >  2:5486501/1‑93 (MQ=255)
            gCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAcc                                                                              >  1:1339143/1‑93 (MQ=255)
             ccGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCa                                                                             <  1:2421618/93‑1 (MQ=255)
             ccGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCa                                                                             <  2:4279397/93‑1 (MQ=255)
              cGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAg                                                                            >  1:1106577/1‑93 (MQ=255)
               ggAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGt                                                                           >  2:3128714/1‑93 (MQ=255)
               ggAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGt                                                                           >  2:2722914/1‑93 (MQ=255)
               ggAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGt                                                                           >  2:5353983/1‑93 (MQ=255)
               cgAATATCGAGAGTGATTTTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGt                                                                           <  1:4006734/92‑1 (MQ=255)
                gAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGtt                                                                          <  1:1364940/93‑1 (MQ=255)
                 aaTATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTc                                                                         >  1:2291716/1‑93 (MQ=255)
                   tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCa                                                                       >  1:774788/1‑93 (MQ=255)
                   tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCa                                                                       >  1:5950165/1‑93 (MQ=255)
                    atCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAg                                                                      >  1:757469/1‑93 (MQ=255)
                    atCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAg                                                                      >  2:2399491/1‑93 (MQ=255)
                     tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCAATAATGCTGGCTGACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGa                                                                     <  1:2860870/93‑1 (MQ=255)
                       gagaGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATg                                                                   >  2:4041468/1‑93 (MQ=255)
                         gagTGATATGGTTCAGCGCACCGGTTTTTCCATAATGCTGGCTGCCGCCCGGCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCg                                                                 <  1:3289574/93‑1 (MQ=255)
                          agTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGt                                                                >  1:5671663/1‑93 (MQ=255)
                           gTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTc                                                               <  1:2604733/93‑1 (MQ=255)
                            tGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCa                                                              >  2:6447450/1‑93 (MQ=255)
                             tatatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCAt                                                             <  1:3664286/92‑1 (MQ=255)
                             gATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCCTCAt                                                             >  1:2982652/1‑93 (MQ=255)
                              atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCAtt                                                            <  2:525722/93‑1 (MQ=255)
                                atTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGc                                                          <  2:1889135/93‑1 (MQ=255)
                                atTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGc                                                          >  1:3519770/1‑93 (MQ=255)
                                 ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCg                                                         <  1:4432737/93‑1 (MQ=255)
                                 ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCg                                                         >  2:2148615/1‑93 (MQ=255)
                                 ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCg                                                         >  2:2538608/1‑93 (MQ=255)
                                 ttGTTCAGAGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCg                                                         >  2:6364771/1‑93 (MQ=255)
                                  tGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCgg                                                        >  1:4941000/1‑93 (MQ=255)
                                   gTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACGGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGc                                                       <  2:2719767/93‑1 (MQ=255)
                                     tCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCaa                                                     <  2:1472133/93‑1 (MQ=255)
                                     tCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCaa                                                     <  2:471904/93‑1 (MQ=255)
                                      cAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAc                                                    <  1:5654916/93‑1 (MQ=255)
                                        gcgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCt                                                  >  2:4095968/1‑93 (MQ=255)
                                           cAACGTTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcac                                               <  2:5653638/93‑1 (MQ=255)
                                           cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcac                                               <  2:4651323/93‑1 (MQ=255)
                                           cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcac                                               <  2:2898407/93‑1 (MQ=255)
                                           cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGCTCCAGATGCGGCATTGCGGCAACCTcac                                               >  1:5279832/1‑93 (MQ=255)
                                             aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGGACCAGATCCAGATGCGTCATTGCAGCAACCTcacca                                             >  1:4848704/1‑93 (MQ=255)
                                             aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca                                             >  2:2635980/1‑93 (MQ=255)
                                             aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca                                             <  2:5804944/93‑1 (MQ=255)
                                              cGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac                                            >  2:3873405/1‑93 (MQ=255)
                                               ggTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACg                                           <  2:757813/93‑1 (MQ=255)
                                               ggTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACg                                           <  1:2770814/93‑1 (MQ=255)
                                                gTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGa                                          >  1:2926392/1‑93 (MQ=255)
                                                 tttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAg                                         <  1:6379455/93‑1 (MQ=255)
                                                  ttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg                                        <  2:36011/93‑1 (MQ=255)
                                                  ttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg                                        >  1:191363/1‑93 (MQ=255)
                                                   tttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAggg                                       >  2:2502711/1‑92 (MQ=255)
                                                   tttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgt                                       >  1:6179506/1‑93 (MQ=255)
                                                   tttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgt                                       >  1:412143/1‑93 (MQ=255)
                                                     tCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcg                                     >  1:6284274/1‑93 (MQ=255)
                                                     tCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcg                                     >  2:2797498/1‑93 (MQ=255)
                                                       cATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGGACCAGTTCCAGAAGCGTCATTGCGCCAACCTCACCACGAGggcgtc                                   >  2:2746936/1‑93 (MQ=255)
                                                       cATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc                                   <  2:4005225/93‑1 (MQ=255)
                                                        aTAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGGACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCGTCa                                  >  2:5878901/1‑93 (MQ=255)
                                                        aTAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCa                                  >  2:3355417/1‑93 (MQ=255)
                                                           aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc                               <  1:62485/93‑1 (MQ=255)
                                                           aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc                               >  1:49814/1‑93 (MQ=255)
                                                           aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc                               <  1:3110604/93‑1 (MQ=255)
                                                            tGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGcc                              >  1:5363294/1‑93 (MQ=255)
                                                             gCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa                             >  2:364065/1‑93 (MQ=255)
                                                               tGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg                           <  2:1017133/93‑1 (MQ=255)
                                                               tGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg                           >  1:3760649/1‑93 (MQ=255)
                                                               tGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg                           <  1:1809987/93‑1 (MQ=255)
                                                               tGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg                           <  2:1250776/93‑1 (MQ=255)
                                                                  cTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGaa                        <  2:1777098/93‑1 (MQ=255)
                                                                   tCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAg                       >  2:4530654/1‑93 (MQ=255)
                                                                     aCGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGtt                     >  1:3950172/1‑93 (MQ=255)
                                                                      cgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttc                    <  1:2723711/93‑1 (MQ=255)
                                                                       gcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct                   <  1:5775787/93‑1 (MQ=255)
                                                                          cgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttca                >  1:4604757/1‑93 (MQ=255)
                                                                          cgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttca                >  2:3542107/1‑93 (MQ=255)
                                                                          cgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttca                <  1:919369/93‑1 (MQ=255)
                                                                           gccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcat               >  1:40259/1‑93 (MQ=255)
                                                                            ccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcatt              >  1:4598020/1‑93 (MQ=255)
                                                                            ccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcatt              <  1:5875037/93‑1 (MQ=255)
                                                                             cAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcattc             <  1:668623/93‑1 (MQ=255)
                                                                              aGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcattca            <  2:2592593/93‑1 (MQ=255)
                                                                              aGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcattca            >  1:1504543/1‑93 (MQ=255)
                                                                              aGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCttcattca            <  1:6470116/93‑1 (MQ=255)
                                                                               gTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAc           <  1:122485/93‑1 (MQ=255)
                                                                               gTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAc           >  1:5547179/1‑93 (MQ=255)
                                                                                ttGCGCGACAGGCGGGACGGGAACAAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAcc          <  2:3912667/93‑1 (MQ=255)
                                                                                       aCAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCATCCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAccc   >  1:3463459/1‑93 (MQ=255)
                                                                                       aCAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAccc   <  2:2335849/93‑1 (MQ=255)
                                                                                        cAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAcccc  <  1:3610033/93‑2 (MQ=255)
                                                                                        cAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCa  >  2:5633351/1‑93 (MQ=255)
                                                                                             |                                                                                       
ACCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCA  >  NC_000913/3627048‑3627227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACG  >  NC_000913/3627049‑3627234
                                                                                              |                                                                                             
CCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GG                                                                                               >  SRR4302537.2059226/1‑94 (MQ=60)
CCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GG                                                                                               >  SRR4302537.1728626/1‑94 (MQ=60)
 CATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GG‑G                                                                                             <  SRR4302537.718318/94‑1 (MQ=60)
  ATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GGga                                                                                             >  SRR4302537.1002503/1‑92 (MQ=60)
    ACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACG                                                                                           <  SRR4302537.2098378/94‑1 (MQ=60)
    ACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACG                                                                                           <  SRR4302537.3250614/94‑1 (MQ=60)
     CAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGG                                                                                          <  SRR4302537.3798193/94‑1 (MQ=60)
     CAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGG                                                                                          >  SRR4302537.650125/1‑94 (MQ=60)
      AGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGG                                                                                         <  SRR4302537.1723426/94‑1 (MQ=60)
       GCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGA                                                                                        <  SRR4302537.2675745/94‑1 (MQ=60)
         GGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAAC                                                                                      >  SRR4302537.3018785/1‑94 (MQ=60)
         GGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAAC                                                                                      <  SRR4302537.5637136/94‑1 (MQ=60)
          GGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACC                                                                                     >  SRR4302537.1348471/1‑94 (MQ=60)
          GGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACC                                                                                     >  SRR4302537.566319/1‑94 (MQ=60)
           GCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCA                                                                                    >  SRR4302537.4956338/1‑94 (MQ=60)
            CCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAG                                                                                   >  SRR4302537.1114218/1‑94 (MQ=60)
            CCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAG                                                                                   <  SRR4302537.2438679/94‑1 (MQ=60)
              GGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTT                                                                                 <  SRR4302537.874713/94‑1 (MQ=60)
              GGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTT                                                                                 >  SRR4302537.2761924/1‑94 (MQ=60)
              CGAATATCGAGAGTGATTTTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTT                                                                                 <  SRR4302537.4034775/94‑1 (MQ=60)
               GAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTC                                                                                <  SRR4302537.1374452/94‑1 (MQ=60)
               GAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTC                                                                                >  SRR4302537.2307897/1‑94 (MQ=60)
                AATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGGACCAGTTCC                                                                               >  SRR4302537.3331182/1‑94 (MQ=60)
                 ATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCA                                                                              >  SRR4302537.5991011/1‑94 (MQ=60)
                 ATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCA                                                                              >  SRR4302537.780096/1‑94 (MQ=60)
                  TATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAG                                                                             >  SRR4302537.762641/1‑94 (MQ=60)
                   ATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGA                                                                            >  SRR4302537.4958372/1‑94 (MQ=60)
                    TCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCAATAATGCTGGCTGACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGAT                                                                           <  SRR4302537.2880930/94‑1 (MQ=60)
                        GAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGT                                                                       >  SRR4302537.3144201/1‑94 (MQ=60)
                        GAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGT                                                                       >  SRR4302537.5710471/1‑94 (MQ=60)
                        GAGTGATATGGTTCAGCGCACCGGTTTTTCCATAATGCTGGCTGCCGCCCGGCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGT                                                                       <  SRR4302537.3312823/94‑1 (MQ=60)
                          GTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCA                                                                     <  SRR4302537.2622946/94‑1 (MQ=60)
                          GTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCA                                                                     >  SRR4302537.5954654/1‑94 (MQ=60)
                           TGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCAT                                                                    <  SRR4302537.2447169/94‑1 (MQ=60)
                           TGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCAT                                                                    >  SRR4302537.5331051/1‑94 (MQ=60)
                           TGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCAT                                                                    >  SRR4302537.2795742/1‑94 (MQ=60)
                           TGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCCTCAT                                                                    >  SRR4302537.3003504/1‑94 (MQ=60)
                            TATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATT                                                                   <  SRR4302537.3690079/94‑1 (MQ=60)
                            GATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATT                                                                   <  SRR4302537.3014198/94‑1 (MQ=60)
                            GATATTGTTCAGCGCAACGGTTTTAACATAAGGCTGGCTGCCGCCCGCCAGTTCCGCGACAGGC‑GGTACGGGAACCAGTTCCAGATGCGTCATT                                                                   <  SRR4302537.2489367/94‑1 (MQ=60)
                             ATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTG                                                                  >  SRR4302537.4043544/1‑94 (MQ=60)
                             ATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTG                                                                  >  SRR4302537.1371071/1‑94 (MQ=60)
                              TATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGC                                                                 >  SRR4302537.3544676/1‑94 (MQ=60)
                               ATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCG                                                                >  SRR4302537.4016841/1‑94 (MQ=60)
                               ATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCG                                                                >  SRR4302537.3303665/1‑94 (MQ=60)
                               ATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCG                                                                >  SRR4302537.180861/1‑94 (MQ=60)
                               ATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCG                                                                >  SRR4302537.2006478/1‑94 (MQ=60)
                               ATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCG                                                                <  SRR4302537.6474353/94‑1 (MQ=60)
                                TTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGG                                                               >  SRR4302537.4975073/1‑94 (MQ=60)
                                TTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGG                                                               <  SRR4302537.4463347/94‑1 (MQ=60)
                                  GTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCA                                                             >  SRR4302537.3156195/1‑94 (MQ=60)
                                   TTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAA                                                            >  SRR4302537.5870594/1‑94 (MQ=60)
                                     CAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACC                                                          <  SRR4302537.5693613/94‑1 (MQ=60)
                                      AGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCT                                                         >  SRR4302537.5304908/1‑94 (MQ=60)
                                       GCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTC                                                        <  SRR4302537.4630572/94‑1 (MQ=60)
                                       GCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTC                                                        <  SRR4302537.4992670/94‑1 (MQ=60)
                                        CGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCA                                                       >  SRR4302537.5715335/1‑94 (MQ=60)
                                        CGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCA                                                       <  SRR4302537.3713984/94‑1 (MQ=60)
                                        CGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCA                                                       <  SRR4302537.2915721/94‑1 (MQ=60)
                                         GCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCAC                                                      >  SRR4302537.4089749/1‑94 (MQ=60)
                                         GCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCAC                                                      >  SRR4302537.4651937/1‑94 (MQ=60)
                                         GCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCAC                                                      <  SRR4302537.6342105/94‑1 (MQ=60)
                                         GCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCAC                                                      <  SRR4302537.3196194/94‑1 (MQ=60)
                                         GCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGCTCCAGATGCGGCATTGCGGCAACCTCAC                                                      >  SRR4302537.5316154/1‑94 (MQ=60)
                                          CAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACC                                                     >  SRR4302537.656253/1‑94 (MQ=60)
                                          CAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACC                                                     <  SRR4302537.285491/94‑1 (MQ=60)
                                          CAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACC                                                     <  SRR4302537.2984735/94‑1 (MQ=60)
                                           AACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGGACCAGATCCAGATGCGTCATTGCAGCAACCTCACCA                                                    >  SRR4302537.4882163/1‑94 (MQ=60)
                                           AACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCA                                                    >  SRR4302537.2413624/1‑94 (MQ=60)
                                            ACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGGACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCAC                                                   >  SRR4302537.5754081/1‑94 (MQ=60)
                                             CGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACG                                                  >  SRR4302537.57050/1‑94 (MQ=60)
                                              GGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGA                                                 >  SRR4302537.2946942/1‑94 (MQ=60)
                                              GGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGA                                                 <  SRR4302537.2790174/94‑1 (MQ=60)
                                               GTTTTTCCATAATGCTGGCTCCCGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAG                                                <  SRR4302537.1444332/94‑1 (MQ=60)
                                               GTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAG                                                >  SRR4302537.2413384/1‑94 (MQ=60)
                                               GTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAG                                                >  SRR4302537.5567182/1‑94 (MQ=60)
                                                TTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGG                                               >  SRR4302537.192723/1‑94 (MQ=60)
                                                TTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGG                                               >  SRR4302537.3618590/1‑94 (MQ=60)
                                                TTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGG                                               <  SRR4302537.6422946/94‑1 (MQ=60)
                                                 TTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGT                                              >  SRR4302537.414995/1‑94 (MQ=60)
                                                 TTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGT                                              >  SRR4302537.6222070/1‑94 (MQ=60)
                                                 TTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGT                                              <  SRR4302537.742599/94‑1 (MQ=60)
                                                  TTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTC                                             <  SRR4302537.4035941/94‑1 (MQ=60)
                                                  TTTCCATAACGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTC                                             >  SRR4302537.2780433/1‑94 (MQ=60)
                                                   TTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCCGATGCGTCATTGAGCCAAACTCACCACGGGGGCG                                            >  SRR4302537.1909160/1‑94 (MQ=60)
                                                   TTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCG                                            >  SRR4302537.6327362/1‑94 (MQ=60)
                                                   TTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCG                                            >  SRR4302537.1257122/1‑94 (MQ=60)
                                                     CCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTC                                          >  SRR4302537.6329000/1‑94 (MQ=60)
                                                      CATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCA                                         >  SRR4302537.4827759/1‑94 (MQ=60)
                                                      CATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCA                                         >  SRR4302537.5043199/1‑94 (MQ=60)
                                                       ATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAG                                        <  SRR4302537.4617730/94‑1 (MQ=60)
                                                       ATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAG                                        <  SRR4302537.1329750/94‑1 (MQ=60)
                                                        TAGTGCTGGCTCCCGCACGCCAGTTGCGCGACAGGCGGG‑ACGAGAACCAGTTCAAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGG                                       <  SRR4302537.3874193/94‑1 (MQ=60)
                                                        TAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGG                                       <  SRR4302537.3263472/94‑1 (MQ=60)
                                                         AATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGC                                      >  SRR4302537.50183/1‑94 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     >  SRR4302537.627368/1‑94 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     >  SRR4302537.2544222/1‑94 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     <  SRR4302537.1400927/94‑1 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     >  SRR4302537.5400006/1‑94 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     <  SRR4302537.3076759/94‑1 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     <  SRR4302537.3132328/94‑1 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     <  SRR4302537.3524042/94‑1 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     <  SRR4302537.62952/94‑1 (MQ=60)
                                                          ATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCC                                     >  SRR4302537.369245/1‑94 (MQ=60)
                                                            GCTGGCTCACGCCCTCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCAC                                   <  SRR4302537.3324086/94‑1 (MQ=60)
                                                             CTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACG                                  >  SRR4302537.3787049/1‑94 (MQ=60)
                                                              TGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGG                                 <  SRR4302537.5899855/94‑1 (MQ=60)
                                                              TGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGG                                 <  SRR4302537.1822607/94‑1 (MQ=60)
                                                              TGGCTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCGTCAGGCCACGG                                 >  SRR4302537.1136611/1‑94 (MQ=60)
                                                                 CTCACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAG                              <  SRR4302537.6292661/94‑1 (MQ=60)
                                                                   CACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTT                            >  SRR4302537.3977800/1‑94 (MQ=60)
                                                                   CACGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTT                            >  SRR4302537.4455010/1‑94 (MQ=60)
                                                                     CGCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCT                          <  SRR4302537.2742735/94‑1 (MQ=60)
                                                                      GCCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTT                         <  SRR4302537.5815378/94‑1 (MQ=60)
                                                                       CCCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTC                        <  SRR4302537.6214443/94‑1 (MQ=60)
                                                                        CCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCA                       <  SRR4302537.3099955/94‑1 (MQ=60)
                                                                        CCGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCA                       >  SRR4302537.4636638/1‑94 (MQ=60)
                                                                         CGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCAT                      <  SRR4302537.818489/94‑1 (MQ=60)
                                                                         CGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCAT                      >  SRR4302537.772176/1‑94 (MQ=60)
                                                                         CGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCAT                      >  SRR4302537.40564/1‑94 (MQ=60)
                                                                         CGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCAT                      <  SRR4302537.925715/94‑1 (MQ=60)
                                                                         CGCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCAT                      <  SRR4302537.5409351/94‑1 (MQ=60)
                                                                          GCCAGTTGCGCGACAGGCGGG‑CCGGGAACCAGTGCCAGATGCGTCATTGCGGCAACCTCACGACGAGGGCGACAGGCCACGGGAGTTCTTCATT                     >  SRR4302537.470149/1‑94 (MQ=60)
                                                                          GCCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATT                     >  SRR4302537.4629842/1‑94 (MQ=60)
                                                                           CCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTC                    <  SRR4302537.5915341/94‑1 (MQ=60)
                                                                           CCAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTC                    <  SRR4302537.6516225/94‑1 (MQ=60)
                                                                            CAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCA                   >  SRR4302537.4527068/1‑94 (MQ=60)
                                                                            CAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCA                   >  SRR4302537.1515041/1‑94 (MQ=60)
                                                                            CAGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCA                   <  SRR4302537.673194/94‑1 (MQ=60)
                                                                             AGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAC                  <  SRR4302537.4169053/94‑1 (MQ=60)
                                                                             AGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAC                  >  SRR4302537.5585054/1‑94 (MQ=60)
                                                                             AGTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCAC                  <  SRR4302537.6513978/94‑1 (MQ=60)
                                                                              GTTGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACC                 <  SRR4302537.123368/94‑1 (MQ=60)
                                                                                TGCGCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCG               <  SRR4302537.3586565/94‑1 (MQ=60)
                                                                                   GCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAC            >  SRR4302537.3960338/1‑94 (MQ=60)
                                                                                   GCGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCAC            >  SRR4302537.6084844/1‑94 (MQ=60)
                                                                                    CGACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACC           >  SRR4302537.631140/1‑94 (MQ=60)
                                                                                     GACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCATCCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCC          >  SRR4302537.3487948/1‑94 (MQ=60)
                                                                                     GACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCC          <  SRR4302537.2982093/94‑1 (MQ=60)
                                                                                     GACAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCC          <  SRR4302537.2136564/94‑1 (MQ=60)
                                                                                       CAGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCCC        <  SRR4302537.3635479/94‑1 (MQ=60)
                                                                                        AGGCGGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACG       >  SRR4302537.2882488/1‑94 (MQ=60)
                                                                                           cgGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTA    <  SRR4302537.459346/92‑1 (MQ=60)
                                                                                           cgGG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTA    >  SRR4302537.967709/3‑94 (MQ=60)
                                                                                           G‑GG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTAC   <  SRR4302537.3171007/94‑1 (MQ=60)
                                                                                           G‑GG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGACGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTAC   <  SRR4302537.3490710/94‑1 (MQ=60)
                                                                                             GG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACG  <  SRR4302537.1598439/94‑1 (MQ=60)
                                                                                             GG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACG  >  SRR4302537.4248130/1‑94 (MQ=60)
                                                                                              |                                                                                             
CCATACAGCGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑GG‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACG  >  NC_000913/3627049‑3627234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑