Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,799,097	T→C	Q177R (CAG→CGG)	rfaJ ←	UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,799,097	0	T	C	100.0%	1062.1 / NA	299	Q177R (CAG→CGG)	rfaJ	UDP‑D‑glucose:(galactosyl)lipopolysaccharide glucosyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (175/124); total (175/124)

Only 100 of 301 total aligned reads displayed.

TTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTT  >  NC_000913/3799007‑3799186

ttACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGc                                                                                         >  1:1998598/1‑93 (MQ=255)

ttACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGc                                                                                         >  2:2237979/1‑93 (MQ=255)

    tCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCaa                                                                                     >  2:1261749/1‑93 (MQ=255)

    tCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCaa                                                                                     >  2:5226565/1‑93 (MQ=255)

     cATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTACAGTACCGCCCAAg                                                                                    >  1:3690847/1‑93 (MQ=255)

     cATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAg                                                                                    >  2:5334072/1‑93 (MQ=255)

     cATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAg                                                                                    >  2:336942/1‑93 (MQ=255)

      aTAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGt                                                                                   <  1:5770373/93‑1 (MQ=255)

      aTAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGt                                                                                   >  2:2460927/1‑93 (MQ=255)

       tAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTa                                                                                  <  1:6325211/93‑1 (MQ=255)

       tAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTa                                                                                  >  1:5545943/1‑93 (MQ=255)

       tAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTa                                                                                  >  2:4684303/1‑93 (MQ=255)

        aaGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTaa                                                                                 <  2:5594829/93‑1 (MQ=255)

          gAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAAtt                                                                               <  1:6179906/93‑1 (MQ=255)

          gAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAAtt                                                                               >  1:5725731/1‑93 (MQ=255)

          gAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACAACGGAATTAAAGTACCGCCCAAGTAAtt                                                                               >  1:4120138/1‑93 (MQ=255)

             tAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAg                                                                            >  1:2608793/1‑93 (MQ=255)

             tAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAg                                                                            >  1:4830776/1‑93 (MQ=255)

               gACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGa                                                                          <  2:2115339/93‑1 (MQ=255)

                aCAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGAt                                                                         <  1:5824788/93‑1 (MQ=255)

                aCAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGAt                                                                         >  1:3823288/1‑93 (MQ=255)

                aCAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGAt                                                                         >  1:1547256/1‑93 (MQ=255)

                   aCGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAg                                                                      >  1:1404614/1‑93 (MQ=255)

                   aCGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAg                                                                      >  2:3665138/1‑93 (MQ=255)

                     gCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGAc                                                                    >  1:1207480/1‑93 (MQ=255)

                     gCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGAc                                                                    <  2:1565208/93‑1 (MQ=255)

                      cTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACa                                                                   >  2:3823036/1‑93 (MQ=255)

                      cTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACa                                                                   <  2:2739583/93‑1 (MQ=255)

                      cTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACa                                                                   <  1:1770849/93‑1 (MQ=255)

                       tttttCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATGAGACaa                                                                  >  1:2837679/1‑93 (MQ=255)

                        ttttCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAAc                                                                 >  2:4010072/1‑93 (MQ=255)

                        ttttCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAAc                                                                 <  2:4569973/93‑1 (MQ=255)

                         tttCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAAcc                                                                >  1:27804/1‑93 (MQ=255)

                          ttCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCt                                                               >  2:5035451/1‑93 (MQ=255)

                           tCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTg                                                              >  2:5676470/1‑93 (MQ=255)

                            cTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTgg                                                             >  1:6426816/1‑93 (MQ=255)

                            cTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTgg                                                             >  2:1435729/1‑93 (MQ=255)

                              gTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGAt                                                           >  2:5415249/1‑93 (MQ=255)

                               ttAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATa                                                          >  2:1115036/1‑93 (MQ=255)

                               ttAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATa                                                          >  1:4083488/1‑93 (MQ=255)

                                tAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATAc                                                         <  2:6094606/93‑1 (MQ=255)

                                  gTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCg                                                       >  2:3769073/1‑93 (MQ=255)

                                   ttttGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGc                                                      >  2:4924131/1‑93 (MQ=255)

                                         gTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTc                                                >  1:5476746/1‑93 (MQ=255)

                                            aGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTg                                             >  2:853216/1‑93 (MQ=255)

                                            aGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTg                                             >  2:3548994/1‑93 (MQ=255)

                                              cccATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCa                                           >  2:2946024/1‑93 (MQ=255)

                                               ccATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCAt                                          <  1:898530/93‑1 (MQ=255)

                                                cATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCAtt                                         >  2:1986765/1‑93 (MQ=255)

                                                cATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCAtt                                         >  1:47380/1‑93 (MQ=255)

                                                cATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCAtt                                         >  1:5308626/1‑93 (MQ=255)

                                                cATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCAtt                                         <  2:579930/93‑1 (MQ=255)

                                                 aTTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTg                                        <  1:768257/93‑1 (MQ=255)

                                                  tttttttAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTgg                                       <  1:357374/93‑1 (MQ=255)

                                                    tttttAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCt                                     <  2:327205/93‑1 (MQ=255)

                                                     ttttAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTc                                    <  2:4282254/93‑1 (MQ=255)

                                                        tAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAAc                                 <  2:2320559/93‑1 (MQ=255)

                                                          aGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACAt                               >  1:4158722/1‑93 (MQ=255)

                                                           gTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATc                              >  1:2414974/1‑93 (MQ=255)

                                                           gTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATc                              >  2:2768007/1‑93 (MQ=255)

                                                           gTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATc                              >  1:2574092/1‑93 (MQ=255)

                                                           gTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATc                              >  2:5921401/1‑93 (MQ=255)

                                                            tCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCt                             >  2:2845526/1‑93 (MQ=255)

                                                            tCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCt                             >  2:4235189/1‑93 (MQ=255)

                                                             cTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCtt                            >  1:3194954/1‑93 (MQ=255)

                                                             cTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCtt                            <  2:1654330/93‑1 (MQ=255)

                                                             cTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCtt                            <  1:4536297/93‑1 (MQ=255)

                                                              taaataaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCttt                           >  2:6219814/1‑93 (MQ=255)

                                                               aaataaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTa                          <  2:516439/93‑1 (MQ=255)

                                                                aataaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaa                         <  1:5999672/93‑1 (MQ=255)

                                                                aataaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaa                         <  1:4618864/93‑1 (MQ=255)

                                                                  taaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaaca                       >  1:3870838/1‑93 (MQ=255)

                                                                  taaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaaca                       >  1:5051488/1‑93 (MQ=255)

                                                                  taaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaaca                       >  1:2202922/1‑93 (MQ=255)

                                                                   aaaCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaacaa                      <  1:3469662/93‑1 (MQ=255)

                                                                     aCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAacaaca                    <  2:78689/93‑1 (MQ=255)

                                                                     aCGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAacaaca                    <  1:940414/93‑1 (MQ=255)

                                                                      cGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAcag                   >  2:1748094/1‑93 (MQ=255)

                                                                      cGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAcag                   <  1:6284937/93‑1 (MQ=255)

                                                                       gACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAcagc                  >  1:4907053/1‑93 (MQ=255)

                                                                       gACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAcagc                  <  2:5520182/93‑1 (MQ=255)

                                                                        acacCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAcagca                 <  1:6447063/93‑1 (MQ=255)

                                                                        acacCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAcagca                 >  2:1844727/1‑93 (MQ=255)

                                                                         cacCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAcagcag                >  2:5879262/1‑93 (MQ=255)

                                                                          acCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACagcagc               <  1:5124966/93‑1 (MQ=255)

                                                                            cGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCaa             >  1:1288200/1‑93 (MQ=255)

                                                                            cGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCaa             <  1:2319826/93‑1 (MQ=255)

                                                                            cGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCaa             >  2:2564563/1‑93 (MQ=255)

                                                                             ggAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAc            <  1:1014077/93‑1 (MQ=255)

                                                                             ggAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAc            <  2:4318518/93‑1 (MQ=255)

                                                                             ggAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAc            >  2:4811685/1‑93 (MQ=255)

                                                                              gAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAcc           >  2:3144954/1‑93 (MQ=255)

                                                                              gAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAcc           >  1:4295769/1‑93 (MQ=255)

                                                                                aTTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGc         >  1:5638657/1‑93 (MQ=255)

                                                                                  tAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTc       <  1:5886036/93‑1 (MQ=255)

                                                                                    aaGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCa     <  1:6099163/93‑1 (MQ=255)

                                                                                     aGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAt    >  1:2116622/1‑93 (MQ=255)

                                                                                     aGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAt    <  2:4524735/93‑1 (MQ=255)

                                                                                      gTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAtt   <  1:3956712/93‑1 (MQ=255)

                                                                                       tACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAttt  >  2:1391212/1‑93 (MQ=255)

TTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTT  >  NC_000913/3799007‑3799186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTTAAAC  >  NC_000913/3799005‑3799190

CTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCG                                                                                              <  SRR4302537.217427/94‑1 (MQ=60)

 TTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGC                                                                                             >  SRR4302537.4902212/1‑94 (MQ=60)

 TTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGC                                                                                             >  SRR4302537.2012497/1‑94 (MQ=60)

  TTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCC                                                                                            >  SRR4302537.3641995/1‑94 (MQ=60)

    ACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCA                                                                                          >  SRR4302537.2618774/1‑94 (MQ=60)

    ACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCA                                                                                          >  SRR4302537.3522604/1‑94 (MQ=60)

     CTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAA                                                                                         >  SRR4302537.6140976/1‑94 (MQ=60)

     CTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAA                                                                                         >  SRR4302537.6341885/1‑94 (MQ=60)

      TCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTACAGTACCGCCCAAG                                                                                        >  SRR4302537.3716817/1‑94 (MQ=60)

      TCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAG                                                                                        >  SRR4302537.430440/1‑94 (MQ=60)

       CATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGT                                                                                       >  SRR4302537.563874/1‑94 (MQ=60)

        ATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTA                                                                                      >  SRR4302537.3883291/1‑94 (MQ=60)

        ATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTA                                                                                      >  SRR4302537.5583811/1‑94 (MQ=60)

        ATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTA                                                                                      <  SRR4302537.5809925/94‑1 (MQ=60)

         TAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAA                                                                                     <  SRR4302537.6368479/94‑1 (MQ=60)

          AAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAAT                                                                                    >  SRR4302537.6374589/1‑94 (MQ=60)

           AGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATT                                                                                   <  SRR4302537.41862/94‑1 (MQ=60)

           AGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATT                                                                                   >  SRR4302537.2320150/1‑94 (MQ=60)

           AGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATT                                                                                   >  SRR4302537.5764925/1‑94 (MQ=60)

           AGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATT                                                                                   <  SRR4302537.5576331/94‑1 (MQ=60)

           AGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGGAATT                                                                                   >  SRR4302537.5827326/1‑94 (MQ=60)

           AGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACAACGGAATTAAAGTACCGCCCAAGTAATT                                                                                   >  SRR4302537.4148907/1‑94 (MQ=60)

           AGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGACCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATT                                                                                   <  SRR4302537.2108108/94‑1 (MQ=60)

            GAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTC                                                                                  <  SRR4302537.6222474/94‑1 (MQ=60)

            GAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCAAAGTAATTC                                                                                  >  SRR4302537.4161778/1‑94 (MQ=60)

             AATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTACATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCA                                                                                 >  SRR4302537.2395770/1‑94 (MQ=60)

             AATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCA                                                                                 >  SRR4302537.6035281/1‑94 (MQ=60)

              ATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAG                                                                                >  SRR4302537.2627038/1‑94 (MQ=60)

              ATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAG                                                                                >  SRR4302537.1143941/1‑94 (MQ=60)

              ATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAG                                                                                >  SRR4302537.4864140/1‑94 (MQ=60)

                AGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGA                                                                              <  SRR4302537.791482/94‑1 (MQ=60)

                 GACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGAT                                                                             >  SRR4302537.3850094/1‑94 (MQ=60)

                 GACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGAT                                                                             >  SRR4302537.1558057/1‑94 (MQ=60)

                  ACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATC                                                                            <  SRR4302537.5864705/94‑1 (MQ=60)

                   CAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCA                                                                           <  SRR4302537.4359016/94‑1 (MQ=60)

                   CAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCA                                                                           >  SRR4302537.464278/1‑94 (MQ=60)

                    AACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAG                                                                          >  SRR4302537.5672097/1‑94 (MQ=60)

                    AACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAG                                                                          <  SRR4302537.4750030/94‑1 (MQ=60)

                    AACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAG                                                                          >  SRR4302537.1414396/1‑94 (MQ=60)

                    AACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAG                                                                          >  SRR4302537.4844735/1‑94 (MQ=60)

                     ATGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGA                                                                         <  SRR4302537.4546912/94‑1 (MQ=60)

                     ACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGA                                                                         <  SRR4302537.2543163/94‑1 (MQ=60)

                     ACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGA                                                                         <  SRR4302537.3949156/94‑1 (MQ=60)

                     ACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAATAATTCAGGATCAGA                                                                         >  SRR4302537.6294391/1‑94 (MQ=60)

                      CGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGAC                                                                        >  SRR4302537.1215885/1‑94 (MQ=60)

                        CTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATGAGACAA                                                                      >  SRR4302537.2857535/1‑94 (MQ=60)

                        CTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAA                                                                      <  SRR4302537.1783180/94‑1 (MQ=60)

                        CTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAA                                                                      >  SRR4302537.5802536/1‑94 (MQ=60)

                          TTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACC                                                                    >  SRR4302537.28022/1‑94 (MQ=60)

                            TTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTG                                                                  <  SRR4302537.4148210/94‑1 (MQ=60)

                             TCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGG                                                                 >  SRR4302537.653719/1‑94 (MQ=60)

                             TCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGG                                                                 >  SRR4302537.6470489/1‑94 (MQ=60)

                              CTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGA                                                                <  SRR4302537.5485219/94‑1 (MQ=60)

                              CTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGAAAACCTGGA                                                                >  SRR4302537.3982008/1‑94 (MQ=60)

                               TGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGAT                                                               <  SRR4302537.2842512/94‑1 (MQ=60)

                                GTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATA                                                              >  SRR4302537.4111994/1‑94 (MQ=60)

                                 TTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATAC                                                             <  SRR4302537.3093401/94‑1 (MQ=60)

                                  TAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACC                                                            <  SRR4302537.1880624/94‑1 (MQ=60)

                                  TAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACC                                                            <  SRR4302537.5369894/94‑1 (MQ=60)

                                    GTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGC                                                          >  SRR4302537.232215/1‑94 (MQ=60)

                                    GTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGC                                                          >  SRR4302537.5720277/1‑94 (MQ=60)

                                     TTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCC                                                         >  SRR4302537.5146775/1‑94 (MQ=60)

                                       TTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTT                                                       <  SRR4302537.4115063/94‑1 (MQ=60)

                                        TGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTT                                                      >  SRR4302537.5529453/1‑94 (MQ=60)

                                        TGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTT                                                      <  SRR4302537.4686054/94‑1 (MQ=60)

                                          CGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTC                                                    >  SRR4302537.5514131/1‑94 (MQ=60)

                                           GTCAGCCCATATTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCT                                                   <  SRR4302537.3847028/94‑1 (MQ=60)

                                            TCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTT                                                  <  SRR4302537.5305534/94‑1 (MQ=60)

                                             CAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTG                                                 <  SRR4302537.2624352/94‑1 (MQ=60)

                                             CAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTG                                                 >  SRR4302537.6296019/1‑94 (MQ=60)

                                              AGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGC                                                >  SRR4302537.2490688/1‑94 (MQ=60)

                                              AGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGC                                                >  SRR4302537.5748861/1‑94 (MQ=60)

                                               GCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCA                                               >  SRR4302537.1665943/1‑94 (MQ=60)

                                               GCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCA                                               >  SRR4302537.2734419/1‑94 (MQ=60)

                                               GCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCA                                               >  SRR4302537.3835934/1‑94 (MQ=60)

                                                CCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCAT                                              >  SRR4302537.5817473/1‑94 (MQ=60)

                                                 CCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATT                                             >  SRR4302537.3548772/1‑94 (MQ=60)

                                                 CCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATT                                             <  SRR4302537.904725/94‑1 (MQ=60)

                                                 CCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATT                                             >  SRR4302537.47734/1‑94 (MQ=60)

                                                 CCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATT                                             >  SRR4302537.6121212/1‑94 (MQ=60)

                                                 CCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATT                                             >  SRR4302537.4877512/1‑94 (MQ=60)

                                                 CCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATT                                             >  SRR4302537.5345099/1‑94 (MQ=60)

                                                  CATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTG                                            <  SRR4302537.942757/94‑1 (MQ=60)

                                                  CATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTG                                            <  SRR4302537.2740819/94‑1 (MQ=60)

                                                   ATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGG                                           >  SRR4302537.1263496/1‑94 (MQ=60)

                                                   ATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGG                                           <  SRR4302537.2378108/94‑1 (MQ=60)

                                                   ATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGG                                           >  SRR4302537.6217582/1‑94 (MQ=60)

                                                   ATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGG                                           <  SRR4302537.773522/94‑1 (MQ=60)

                                                    TTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGC                                          <  SRR4302537.359855/94‑1 (MQ=60)

                                                      TTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTC                                        <  SRR4302537.4043136/94‑1 (MQ=60)

                                                       TTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCA                                       <  SRR4302537.4030736/94‑1 (MQ=60)

                                                        TTTAAGTCTAAATAAACGACACCGTAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAA                                      <  SRR4302537.826254/94‑1 (MQ=60)

                                                          TAAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACA                                    <  SRR4302537.4649969/94‑1 (MQ=60)

                                                           AAGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACAT                                   >  SRR4302537.4187764/1‑94 (MQ=60)

                                                            AGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATC                                  >  SRR4302537.2431969/1‑94 (MQ=60)

                                                            AGTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATC                                  >  SRR4302537.2592115/1‑94 (MQ=60)

                                                             GTCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCT                                 >  SRR4302537.2139481/1‑94 (MQ=60)

                                                              TCTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTT                                >  SRR4302537.3217418/1‑94 (MQ=60)

                                                               CTAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTT                               <  SRR4302537.4567698/94‑1 (MQ=60)

                                                                TAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTA                              >  SRR4302537.5874139/1‑94 (MQ=60)

                                                                TAAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTA                              >  SRR4302537.4815582/1‑94 (MQ=60)

                                                                 AAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAA                             >  SRR4302537.1711765/1‑94 (MQ=60)

                                                                 AAATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAA                             <  SRR4302537.193580/94‑1 (MQ=60)

                                                                  AATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAAC                            <  SRR4302537.4650851/94‑1 (MQ=60)

                                                                  AATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAAC                            <  SRR4302537.6040887/94‑1 (MQ=60)

                                                                   ATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACA                           <  SRR4302537.5797128/94‑1 (MQ=60)

                                                                   ATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACA                           >  SRR4302537.5086268/1‑94 (MQ=60)

                                                                   ATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACA                           >  SRR4302537.3897924/1‑94 (MQ=60)

                                                                   ATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACA                           >  SRR4302537.2218460/1‑94 (MQ=60)

                                                                   ATAAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACA                           <  SRR4302537.140430/94‑1 (MQ=60)

                                                                     AAACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAAC                         <  SRR4302537.3494205/94‑1 (MQ=60)

                                                                      AACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACA                        >  SRR4302537.4197193/1‑94 (MQ=60)

                                                                      AACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACA                        <  SRR4302537.761432/94‑1 (MQ=60)

                                                                      AACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGACTTTTCTTGCATTGGCTCAACATCTTTAACAACA                        >  SRR4302537.4992399/1‑94 (MQ=60)

                                                                       ACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAG                       <  SRR4302537.946899/94‑1 (MQ=60)

                                                                       ACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAG                       <  SRR4302537.1046317/94‑1 (MQ=60)

                                                                       ACGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAG                       <  SRR4302537.371325/94‑1 (MQ=60)

                                                                        CGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGC                      <  SRR4302537.6328028/94‑1 (MQ=60)

                                                                        CGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGC                      >  SRR4302537.4940923/1‑94 (MQ=60)

                                                                        CGACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGC                      <  SRR4302537.1494323/94‑1 (MQ=60)

                                                                         GACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCA                     <  SRR4302537.2130847/94‑1 (MQ=60)

                                                                         GACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCA                     <  SRR4302537.5958078/94‑1 (MQ=60)

                                                                         GACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCA                     <  SRR4302537.1452225/94‑1 (MQ=60)

                                                                          ACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAG                    <  SRR4302537.5090544/94‑1 (MQ=60)

                                                                          ACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAG                    <  SRR4302537.6490795/94‑1 (MQ=60)

                                                                          ACACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAG                    <  SRR4302537.3880942/94‑1 (MQ=60)

                                                                            ACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCA                  >  SRR4302537.2837020/1‑94 (MQ=60)

                                                                            ACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCA                  >  SRR4302537.6480920/1‑94 (MQ=60)

                                                                            ACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCA                  <  SRR4302537.5160285/94‑1 (MQ=60)

                                                                            ACCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCA                  >  SRR4302537.1264725/1‑94 (MQ=60)

                                                                             CCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAA                 >  SRR4302537.1297163/1‑94 (MQ=60)

                                                                             CCGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAA                 >  SRR4302537.5329568/1‑94 (MQ=60)

                                                                              CGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAC                >  SRR4302537.5890368/1‑94 (MQ=60)

                                                                              CGGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAC                <  SRR4302537.2336210/94‑1 (MQ=60)

                                                                              CGGAATGAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAC                <  SRR4302537.6341074/94‑1 (MQ=60)

                                                                               GGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACC               <  SRR4302537.1320359/94‑1 (MQ=60)

                                                                               GGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACC               <  SRR4302537.6418607/94‑1 (MQ=60)

                                                                               GGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACC               <  SRR4302537.1021062/94‑1 (MQ=60)

                                                                               GGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACC               >  SRR4302537.6211286/1‑94 (MQ=60)

                                                                               GGAATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACC               >  SRR4302537.4325631/1‑94 (MQ=60)

                                                                                 AATTAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGC             >  SRR4302537.5677245/1‑94 (MQ=60)

                                                                                    TAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCC          >  SRR4302537.3465134/1‑94 (MQ=60)

                                                                                    TAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCC          >  SRR4302537.6490273/1‑94 (MQ=60)

                                                                                    TAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCC          <  SRR4302537.4965394/94‑1 (MQ=60)

                                                                                    TAAAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCC          <  SRR4302537.5926423/94‑1 (MQ=60)

                                                                                      AAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAT        >  SRR4302537.2131533/1‑94 (MQ=60)

                                                                                      AAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAT        <  SRR4302537.909384/94‑1 (MQ=60)

                                                                                      AAGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAT        <  SRR4302537.6141075/94‑1 (MQ=60)

                                                                                       AGTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATT       >  SRR4302537.3309626/1‑94 (MQ=60)

                                                                                        GTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTT      >  SRR4302537.2169556/1‑94 (MQ=60)

                                                                                        GTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTT      <  SRR4302537.3984398/94‑1 (MQ=60)

                                                                                        GTACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTT      <  SRR4302537.3092035/94‑1 (MQ=60)

                                                                                          ACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTTAA    <  SRR4302537.1489241/94‑1 (MQ=60)

                                                                                          ACCGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTTAA    <  SRR4302537.648844/94‑1 (MQ=60)

                                                                                            CGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTTAAAC  <  SRR4302537.5709942/94‑1 (MQ=60)

CTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATTTAAAC  >  NC_000913/3799005‑3799190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`