Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,896,324	+G	coding (698/711 nt)	b3718 ←	putative isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,896,324	1	.	G	100.0%	817.8 / NA	232	V233A (GTG→GCG)	b3718	putative isomerase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (113/119); total (113/119)

Only 100 of 249 total aligned reads displayed.

TCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCA‑CGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACA  >  NC_000913/3896233‑3896410

tCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCag                                                                                        >  2:108426/1‑92 (MQ=255)

tCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCag                                                                                        <  2:334623/93‑2 (MQ=255)

tCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCag                                                                                        >  1:4859440/1‑92 (MQ=255)

  gTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCagcg                                                                                      >  2:5212384/1‑90 (MQ=255)

  gTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCagcg                                                                                      >  2:4303954/1‑90 (MQ=255)

      ttATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCtt                                                                                  >  1:784729/1‑93 (MQ=255)

       tATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCttt                                                                                 >  2:3856222/1‑93 (MQ=255)

       tATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCttt                                                                                 <  2:1699842/93‑1 (MQ=255)

       tATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCttt                                                                                 >  2:5791698/1‑93 (MQ=255)

         tttAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCTGCAGCGGCTTTAt                                                                               >  1:5948988/1‑93 (MQ=255)

         tttAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAACTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTAt                                                                               >  2:5474703/1‑93 (MQ=255)

          ttAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATc                                                                              <  1:3630828/93‑1 (MQ=255)

           tAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCa                                                                             <  1:5928239/93‑1 (MQ=255)

           tAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCa                                                                             >  2:3899688/1‑93 (MQ=255)

           tAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCa                                                                             >  1:4171809/1‑93 (MQ=255)

           tAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCa                                                                             >  1:3880434/1‑93 (MQ=255)

            aaaTAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAg                                                                            >  1:1301261/1‑93 (MQ=255)

            aaaTAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAg                                                                            <  1:2373618/93‑1 (MQ=255)

            aaaTAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAg                                                                            >  1:5608320/1‑93 (MQ=255)

                aatGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGAt                                                                        <  2:2842071/93‑1 (MQ=255)

                 atGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGAtt                                                                       >  1:2273342/1‑93 (MQ=255)

                  tGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTa                                                                      >  2:2110406/1‑93 (MQ=255)

                    agaACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTccc                                                                    <  2:4870901/93‑1 (MQ=255)

                     gaACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCa                                                                   >  1:3730361/1‑93 (MQ=255)

                     gaACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTACGGCAGCGGCTTTATCCGCGATCACCa                                                                   >  1:2782792/1‑93 (MQ=255)

                       aCAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATc                                                                 >  1:3546594/1‑93 (MQ=255)

                       aCAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATc                                                                 <  1:2130828/93‑1 (MQ=255)

                        cAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCa                                                                <  1:1765465/93‑1 (MQ=255)

                        cAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCa                                                                >  2:1749704/1‑93 (MQ=255)

                         aGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAg                                                               <  2:6386801/93‑1 (MQ=255)

                         aGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAg                                                               <  1:2639394/93‑1 (MQ=255)

                          ggCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGc                                                              <  2:6055143/93‑1 (MQ=255)

                          ggCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGc                                                              >  1:5778353/1‑93 (MQ=255)

                             cGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGaa                                                           <  2:1138464/93‑1 (MQ=255)

                              ggAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAg                                                          <  1:3825804/93‑1 (MQ=255)

                              ggAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAg                                                          <  2:438197/93‑1 (MQ=255)

                               gAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAgg                                                         <  2:1531361/93‑1 (MQ=255)

                                aGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGa                                                        <  1:6413988/93‑1 (MQ=255)

                                 gCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAt                                                       >  1:1415878/1‑93 (MQ=255)

                                  cGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTTCCATCAGCGAAGGATg                                                      <  2:2961762/93‑1 (MQ=255)

                                   gTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGc                                                     <  2:3732867/93‑1 (MQ=255)

                                    tAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCa                                                    <  1:5305141/93‑1 (MQ=255)

                                       ttCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGACGGATGCAGCt                                                 >  2:4972388/1‑93 (MQ=255)

                                          acacaTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCa                                              <  1:4658529/93‑1 (MQ=255)

                                            acaTCCGGACTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAac                                            <  1:4587271/93‑1 (MQ=255)

                                              aTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAacac                                          >  2:3470834/1‑93 (MQ=255)

                                               tCCGGCCTTATTTCTTAAGCTTAACCTAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACg                                         <  2:5221575/93‑1 (MQ=255)

                                               tCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACg                                         >  1:5675659/1‑93 (MQ=255)

                                                 cGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGa                                       >  1:5640754/1‑93 (MQ=255)

                                                  ggCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGaa                                      >  1:5329597/1‑93 (MQ=255)

                                                      ttATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTg                                  <  2:5741345/93‑1 (MQ=255)

                                                      ttATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCCAAGGATGCAGCTGCAACACGGAAGCTg                                  >  1:192364/1‑93 (MQ=255)

                                                       tATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTgg                                 >  1:2976007/1‑93 (MQ=255)

                                                        aTTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGCAGCTGGa                                >  1:1535609/1‑93 (MQ=255)

                                                        aTTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGa                                >  1:6262030/1‑93 (MQ=255)

                                                        aTTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGa                                <  2:4926238/93‑1 (MQ=255)

                                                        aTTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGa                                <  2:2380839/93‑1 (MQ=255)

                                                         tttCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGaa                               >  1:3685864/1‑93 (MQ=255)

                                                           tCTTAAGCTTAACCTAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACa                             >  2:3090833/1‑93 (MQ=255)

                                                           tCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACa                             <  2:2501367/93‑1 (MQ=255)

                                                           tCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGATTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACa                             <  2:5981981/93‑1 (MQ=255)

                                                               aaGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCtt                         <  2:3437378/93‑1 (MQ=255)

                                                               aaGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCtt                         >  1:5171597/1‑93 (MQ=255)

                                                               aaGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCtt                         <  2:4560372/93‑1 (MQ=255)

                                                               aaGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCtt                         <  2:5487374/93‑1 (MQ=255)

                                                               aaGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCtt                         >  1:1700546/1‑93 (MQ=255)

                                                                aGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTc                        <  1:930421/93‑1 (MQ=255)

                                                                aGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTc                        <  1:1890352/93‑1 (MQ=255)

                                                                aGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTc                        >  1:1471337/1‑93 (MQ=255)

                                                                  cTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCgg                      >  2:2594231/1‑93 (MQ=255)

                                                                  cTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAACGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCgg                      <  2:3652171/93‑1 (MQ=255)

                                                                   ttAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGt                     <  2:4522703/93‑1 (MQ=255)

                                                                   ttAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGt                     >  2:4258340/1‑93 (MQ=255)

                                                                   ttAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGt                     >  1:4330876/1‑93 (MQ=255)

                                                                      aCCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAAc                  >  2:903273/1‑93 (MQ=255)

                                                                      aCCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAAc                  >  2:686502/1‑93 (MQ=255)

                                                                      aCCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAAc                  >  2:2994485/1‑93 (MQ=255)

                                                                       ccGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAAcc                 <  1:4311409/93‑1 (MQ=255)

                                                                        cGAGTGCTAATTGTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCg                <  1:4483503/93‑1 (MQ=255)

                                                                        cGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCg                <  1:1127553/93‑1 (MQ=255)

                                                                         gAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCgg               >  1:1013607/1‑93 (MQ=255)

                                                                         gAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCgg               >  1:2495624/1‑93 (MQ=255)

                                                                         gAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCgg               >  1:5696715/1‑93 (MQ=255)

                                                                           gTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGGTGGAACATCTTCGGTAACCGGAc             >  1:2098692/1‑93 (MQ=255)

                                                                           gTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGAc             >  2:3562019/1‑93 (MQ=255)

                                                                            tGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGAcc            >  1:3186319/1‑93 (MQ=255)

                                                                            tGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCGGCAACACGGAAGCTGGAACATCTTCGGTAACCGGAct            >  1:6420002/1‑92 (MQ=255)

                                                                             gCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCt           <  2:3198529/93‑1 (MQ=255)

                                                                             gCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCt           >  1:5750868/1‑93 (MQ=255)

                                                                             gCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCt           <  1:1089374/93‑1 (MQ=255)

                                                                              cTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCtt          <  2:504478/93‑1 (MQ=255)

                                                                              cTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCtt          <  1:3321097/93‑1 (MQ=255)

                                                                               tAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTg         >  2:804468/1‑93 (MQ=255)

                                                                                aaTTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGc        <  1:3062319/93‑1 (MQ=255)

                                                                                aaTTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGc        <  2:4209678/93‑1 (MQ=255)

                                                                                aaTTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGc        >  1:5126784/1‑93 (MQ=255)

                                                                                  ttCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAg      >  2:1884828/1‑93 (MQ=255)

                                                                                     tGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAAc   <  1:2826116/93‑1 (MQ=255)

                                                                                      gCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACa  >  1:4119465/1‑93 (MQ=255)

                                                                                      gCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACa  <  2:327172/93‑1 (MQ=255)

TCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCA‑CGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACA  >  NC_000913/3896233‑3896410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCA‑CGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCA  >  NC_000913/3896231‑3896417

TTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCA                                                                                                <  SRR4302537.4080990/94‑1 (MQ=60)

 TTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCA‑G                                                                                              >  SRR4302537.4892966/1‑94 (MQ=60)

  TCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAgc                                                                                              >  SRR4302537.2875080/1‑92 (MQ=60)

  TCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAgc                                                                                              <  SRR4302537.2504542/94‑3 (MQ=60)

  TCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAgc                                                                                              <  SRR4302537.2114864/94‑3 (MQ=60)

   CGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAgcg                                                                                             >  SRR4302537.5729613/1‑91 (MQ=60)

     TAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGC                                                                                           >  SRR4302537.2712600/1‑94 (MQ=60)

     TAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGC                                                                                           >  SRR4302537.3289688/1‑94 (MQ=60)

     TAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGC                                                                                           <  SRR4302537.4688352/94‑1 (MQ=60)

       GTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTT                                                                                         >  SRR4302537.790112/1‑94 (MQ=60)

       GTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTT                                                                                         >  SRR4302537.5780112/1‑94 (MQ=60)

        TTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTT                                                                                        >  SRR4302537.5908525/1‑94 (MQ=60)

        TTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTCCGGCAGCGGCTTT                                                                                        >  SRR4302537.3287507/1‑94 (MQ=60)

          ATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCTGCAGCGGCTTTAT                                                                                      >  SRR4302537.5989824/1‑94 (MQ=60)

          ATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTAT                                                                                      >  SRR4302537.2354741/1‑94 (MQ=60)

            TTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCA                                                                                    >  SRR4302537.3907575/1‑94 (MQ=60)

            TTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCA                                                                                    <  SRR4302537.3656413/94‑1 (MQ=60)

            TTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCA                                                                                    >  SRR4302537.4200945/1‑94 (MQ=60)

             TAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAG                                                                                   >  SRR4302537.3125967/1‑94 (MQ=60)

             TAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAG                                                                                   >  SRR4302537.6121730/1‑94 (MQ=60)

             TAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAG                                                                                   >  SRR4302537.1310307/1‑94 (MQ=60)

             TAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAG                                                                                   >  SRR4302537.5646662/1‑94 (MQ=60)

             TAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAG                                                                                   <  SRR4302537.5968921/94‑1 (MQ=60)

              AAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGC                                                                                  >  SRR4302537.145025/1‑94 (MQ=60)

              AAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGC                                                                                  <  SRR4302537.2390343/94‑1 (MQ=60)

              AAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGC                                                                                  <  SRR4302537.3749106/94‑1 (MQ=60)

               AATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCG                                                                                 <  SRR4302537.3002817/94‑1 (MQ=60)

                 TAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGAT                                                                               >  SRR4302537.4631260/1‑94 (MQ=60)

                  AATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATT                                                                              >  SRR4302537.2289396/1‑94 (MQ=60)

                  AATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATT                                                                              >  SRR4302537.2187621/1‑94 (MQ=60)

                    TGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTAC                                                                            <  SRR4302537.5376617/94‑1 (MQ=60)

                     GAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACC                                                                           >  SRR4302537.1279013/1‑94 (MQ=60)

                     GAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACA                                                                           >  SRR4302537.4358202/1‑94 (MQ=60)

                      AGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCA                                                                          >  SRR4302537.3756566/1‑94 (MQ=60)

                      AGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTACGGCAGCGGCTTTATCCGCGATCACCA                                                                          >  SRR4302537.2802246/1‑94 (MQ=60)

                        AACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATC                                                                        >  SRR4302537.3571648/1‑94 (MQ=60)

                         ACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCA                                                                       <  SRR4302537.2145822/94‑1 (MQ=60)

                          CAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                                                      <  SRR4302537.1777759/94‑1 (MQ=60)

                          CAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                                                      <  SRR4302537.1594134/94‑1 (MQ=60)

                          CAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                                                      <  SRR4302537.369006/94‑1 (MQ=60)

                          CAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                                                      <  SRR4302537.5256444/94‑1 (MQ=60)

                          CAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                                                      >  SRR4302537.2599242/1‑94 (MQ=60)

                          CAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                                                      >  SRR4302537.3800406/1‑94 (MQ=60)

                           AGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGC                                                                     <  SRR4302537.2657862/94‑1 (MQ=60)

                           AGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGC                                                                     >  SRR4302537.5817959/1‑94 (MQ=60)

                               CGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAG                                                                 >  SRR4302537.4022307/1‑94 (MQ=60)

                               CGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAG                                                                 <  SRR4302537.1098825/94‑1 (MQ=60)

                                GGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGG                                                                <  SRR4302537.3852631/94‑1 (MQ=60)

                                GGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGG                                                                >  SRR4302537.2780498/1‑94 (MQ=60)

                                GGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGG                                                                <  SRR4302537.1874251/94‑1 (MQ=60)

                                  AGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                                                              >  SRR4302537.1425732/1‑94 (MQ=60)

                                  AGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                                                              <  SRR4302537.6457615/94‑1 (MQ=60)

                                  AGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                                                              <  SRR4302537.5510476/94‑1 (MQ=60)

                                  AGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                                                              <  SRR4302537.6457614/94‑1 (MQ=60)

                                  AGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                                                              <  SRR4302537.1973598/94‑1 (MQ=60)

                                   GCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                                                             <  SRR4302537.1528698/94‑1 (MQ=60)

                                    CGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGC                                                            <  SRR4302537.3872937/94‑1 (MQ=60)

                                      TAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAG                                                          <  SRR4302537.5341603/94‑1 (MQ=60)

                                       AATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGC                                                         >  SRR4302537.2765944/1‑94 (MQ=60)

                                       AATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGC                                                         <  SRR4302537.2065742/94‑1 (MQ=60)

                                        ATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGTCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCT                                                        >  SRR4302537.5349098/1‑94 (MQ=60)

                                        ATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCT                                                        >  SRR4302537.5791138/1‑94 (MQ=60)

                                         TTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTG                                                       <  SRR4302537.2184507/94‑1 (MQ=60)

                                            ACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAA                                                    <  SRR4302537.4690736/94‑1 (MQ=60)

                                             CACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAAC                                                   <  SRR4302537.2426967/94‑1 (MQ=60)

                                              ACATCCGGACTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACA                                                  <  SRR4302537.4618999/94‑1 (MQ=60)

                                               CATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACAC                                                 >  SRR4302537.5180239/1‑94 (MQ=60)

                                                ATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACG                                                >  SRR4302537.5714495/1‑94 (MQ=60)

                                                ATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACG                                                <  SRR4302537.49366/94‑1 (MQ=60)

                                                 TCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGG                                               <  SRR4302537.1924251/94‑1 (MQ=60)

                                                 TCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGG                                               <  SRR4302537.3779986/94‑1 (MQ=60)

                                                  CCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGA                                              >  SRR4302537.5679356/1‑94 (MQ=60)

                                                   CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAA                                             >  SRR4302537.5366158/1‑94 (MQ=60)

                                                     GCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGC                                           <  SRR4302537.5216768/94‑1 (MQ=60)

                                                     GCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGC                                           <  SRR4302537.5782209/94‑1 (MQ=60)

                                                      CCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCT                                          >  SRR4302537.6371039/1‑94 (MQ=60)

                                                       CTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTG                                         <  SRR4302537.4198257/94‑1 (MQ=60)

                                                       CTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTG                                         <  SRR4302537.44833/94‑1 (MQ=60)

                                                       CTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTG                                         <  SRR4302537.5005599/94‑1 (MQ=60)

                                                       CTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCCAAGGATGCAGCTGCAACACGGAAGCTG                                         >  SRR4302537.193729/1‑94 (MQ=60)

                                                        TTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGG                                        >  SRR4302537.2996839/1‑94 (MQ=60)

                                                         TATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGCAGCTGGA                                       >  SRR4302537.1546332/1‑94 (MQ=60)

                                                         TATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA                                       >  SRR4302537.6305020/1‑94 (MQ=60)

                                                         TATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA                                       <  SRR4302537.1470185/94‑1 (MQ=60)

                                                          ATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA                                      >  SRR4302537.4316234/1‑94 (MQ=60)

                                                          ATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA                                      >  SRR4302537.3711787/1‑94 (MQ=60)

                                                          ATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA                                      >  SRR4302537.4576834/1‑94 (MQ=60)

                                                           TTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAAC                                     >  SRR4302537.5863391/1‑94 (MQ=60)

                                                            TTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACA                                    >  SRR4302537.5676104/1‑94 (MQ=60)

                                                             TCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACAT                                   <  SRR4302537.126830/94‑1 (MQ=60)

                                                             TCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACAT                                   >  SRR4302537.1667255/1‑94 (MQ=60)

                                                               TTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCT                                 <  SRR4302537.3701347/94‑1 (MQ=60)

                                                                TAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTT                                >  SRR4302537.6059391/1‑94 (MQ=60)

                                                                TAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTT                                >  SRR4302537.5207204/1‑94 (MQ=60)

                                                                TAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTT                                >  SRR4302537.1712436/1‑94 (MQ=60)

                                                                TAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTT                                <  SRR4302537.3550753/94‑1 (MQ=60)

                                                                 AAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTC                               <  SRR4302537.1884065/94‑1 (MQ=60)

                                                                 AAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTC                               >  SRR4302537.1481567/1‑94 (MQ=60)

                                                                 AAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTC                               <  SRR4302537.2995422/94‑1 (MQ=60)

                                                                 AAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTC                               <  SRR4302537.1003912/94‑1 (MQ=60)

                                                                  AGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCG                              <  SRR4302537.936833/94‑1 (MQ=60)

                                                                  AGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCG                              <  SRR4302537.1903490/94‑1 (MQ=60)

                                                                    CTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGT                            >  SRR4302537.4360963/1‑94 (MQ=60)

                                                                    CTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGT                            <  SRR4302537.3104428/94‑1 (MQ=60)

                                                                       AACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAAC                         <  SRR4302537.5981361/94‑1 (MQ=60)

                                                                       AACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAAC                         >  SRR4302537.2817031/1‑94 (MQ=60)

                                                                         CCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCG                       <  SRR4302537.4341372/94‑1 (MQ=60)

                                                                         CCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCG                       >  SRR4302537.5680206/1‑94 (MQ=60)

                                                                          CGAGTGCTAATTGTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGG                      <  SRR4302537.4514518/94‑1 (MQ=60)

                                                                          CGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGG                      >  SRR4302537.1020591/1‑94 (MQ=60)

                                                                          CGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGG                      <  SRR4302537.1135374/94‑1 (MQ=60)

                                                                          CGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGG                      >  SRR4302537.2513194/1‑94 (MQ=60)

                                                                          CGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGG                      >  SRR4302537.5735699/1‑94 (MQ=60)

                                                                            AGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGGTGGAACATCTTCGGTAACCGGAC                    >  SRR4302537.2113491/1‑94 (MQ=60)

                                                                             GTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACC                   <  SRR4302537.4393307/94‑1 (MQ=60)

                                                                             GTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACC                   >  SRR4302537.3208733/1‑94 (MQ=60)

                                                                             GTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCGGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACT                   >  SRR4302537.6463646/1‑94 (MQ=60)

                                                                              TGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCT                  >  SRR4302537.683571/1‑94 (MQ=60)

                                                                              TGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCT                  >  SRR4302537.5790263/1‑94 (MQ=60)

                                                                               GCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTT                 <  SRR4302537.1096900/94‑1 (MQ=60)

                                                                               GCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTT                 <  SRR4302537.109219/94‑1 (MQ=60)

                                                                                CTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTG                <  SRR4302537.3344589/94‑1 (MQ=60)

                                                                                CTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTG                >  SRR4302537.1395866/1‑94 (MQ=60)

                                                                                 TAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGC               >  SRR4302537.3603264/1‑94 (MQ=60)

                                                                                 TAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGC               <  SRR4302537.3555344/94‑1 (MQ=60)

                                                                                 TAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGC               >  SRR4302537.5162114/1‑94 (MQ=60)

                                                                                 TAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGC               >  SRR4302537.905285/1‑94 (MQ=60)

                                                                                  AATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCA              <  SRR4302537.3083657/94‑1 (MQ=60)

                                                                                  AATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCA              >  SRR4302537.723355/1‑94 (MQ=60)

                                                                                   ATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAG             <  SRR4302537.4060654/94‑1 (MQ=60)

                                                                                   ATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAG             <  SRR4302537.5691451/94‑1 (MQ=60)

                                                                                     TCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAA           <  SRR4302537.4248612/94‑1 (MQ=60)

                                                                                      CTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAAC          <  SRR4302537.1745034/94‑1 (MQ=60)

                                                                                       TGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACA         <  SRR4302537.2845871/94‑1 (MQ=60)

                                                                                       TGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACA         >  SRR4302537.4148230/1‑94 (MQ=60)

                                                                                        GCGGCAGCGGCTTTATCAGCGATTGCCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACAT        <  SRR4302537.4884001/94‑1 (MQ=60)

                                                                                         CGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATT       >  SRR4302537.5283937/1‑94 (MQ=60)

                                                                                          GGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTT      >  SRR4302537.5348141/1‑94 (MQ=60)

                                                                                          GGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTT      >  SRR4302537.414801/1‑94 (MQ=60)

                                                                                          GGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTT      <  SRR4302537.4106004/94‑1 (MQ=60)

                                                                                           GCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGCCCTTGCAGAACATTTT     <  SRR4302537.1076208/94‑1 (MQ=60)

                                                                                           GCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTT     <  SRR4302537.2018880/94‑1 (MQ=60)

                                                                                             G‑CGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAGCACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCA  <  SRR4302537.3546906/94‑1 (MQ=60)

                                                                                             G‑CGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCA  <  SRR4302537.159800/94‑1 (MQ=60)

                                                                                             G‑CGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCA  >  SRR4302537.3335310/1‑94 (MQ=60)

TTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCA‑CGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCA  >  NC_000913/3896231‑3896417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`