Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,269,236 G→C A59G (GCT→GGT)  b3124 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,269,2360GC100.0% 1006.2 / NA 293A59G (GCT→GGT) b3124hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (171/122);  total (171/122)

Only 100 of 321 total aligned reads displayed.

CAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATT  >  NC_000913/3269147‑3269325
                                                                                         |                                                                                         
cAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAcccc                                                                                        >  2:907026/1‑93 (MQ=255)
cAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAcccc                                                                                        >  1:5167144/1‑93 (MQ=255)
 aaTAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACcccc                                                                                       >  2:1625699/1‑93 (MQ=255)
  aTAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAcccccc                                                                                      <  1:6671288/93‑1 (MQ=255)
  aTAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGAGGCCCTGTAACCCAGGCGTGACGTTCAcccccc                                                                                      >  1:8692813/1‑93 (MQ=255)
  aTAAACCCGGTTTTG‑CATCGCCGGAGATCCCCTAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCt                                                                                     <  1:5816495/93‑1 (MQ=255)
   tAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCt                                                                                     <  1:3517125/93‑1 (MQ=255)
   tAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCt                                                                                     >  2:7592821/1‑93 (MQ=255)
      aCGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTggt                                                                                  >  1:1424761/1‑92 (MQ=255)
      aCGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTggg                                                                                  >  1:2706942/1‑93 (MQ=255)
      aCGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTggg                                                                                  >  2:6118018/1‑93 (MQ=255)
        gcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTg                                                                                <  2:6538192/93‑1 (MQ=255)
        gcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTg                                                                                <  2:2699495/93‑1 (MQ=255)
        gcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTg                                                                                <  2:1301113/93‑1 (MQ=255)
        gcgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTg                                                                                <  1:6788133/93‑1 (MQ=255)
         cgGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTgg                                                                               >  2:7951540/1‑93 (MQ=255)
           gTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCt                                                                             <  1:4420378/93‑1 (MQ=255)
              ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCa                                                                          >  1:7696774/1‑93 (MQ=255)
              ttGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCa                                                                          <  2:3457003/93‑1 (MQ=255)
                gCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAat                                                                        <  1:1864902/93‑1 (MQ=255)
                  cATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAatca                                                                      <  1:8238592/93‑1 (MQ=255)
                  cATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAatca                                                                      >  1:2108528/1‑93 (MQ=255)
                  cATCGCCGGAGATCCCCCAACTGGCATTCAATTTCTCGCCCAGCGGCCCTGTAACCAAGGCGTGACGTTCACCCCCCTGGGTGGCTGCActca                                                                      <  2:4473516/93‑1 (MQ=255)
                   aTCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAatcat                                                                     >  1:930982/1‑93 (MQ=255)
                   aTCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAatcat                                                                     >  2:1815915/1‑93 (MQ=255)
                   aTCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAatcat                                                                     >  2:5089215/1‑93 (MQ=255)
                   aTCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAatcat                                                                     >  2:5963844/1‑93 (MQ=255)
                    tCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAatcatc                                                                    >  2:7812830/1‑93 (MQ=255)
                     cGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCg                                                                   <  2:468083/93‑1 (MQ=255)
                      gCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGc                                                                  >  1:7875292/1‑93 (MQ=255)
                      gCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGc                                                                  <  1:6366766/93‑1 (MQ=255)
                       ccGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCt                                                                 >  2:4644903/1‑93 (MQ=255)
                        cGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCtt                                                                <  1:7404770/93‑1 (MQ=255)
                         ggAGATCCCCCAACTGGCATTCACTTTCTCGCCCCGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTCGGTGGCTGCAATCATCGCTTc                                                               >  1:6080357/1‑93 (MQ=255)
                         ggAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTc                                                               >  1:8064430/1‑93 (MQ=255)
                          gagaTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTcc                                                              >  1:2332098/1‑93 (MQ=255)
                          gagaTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTcc                                                              >  2:317741/1‑93 (MQ=255)
                          gagaTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTcc                                                              <  2:352085/93‑1 (MQ=255)
                            gaTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCAc                                                            >  1:7029836/1‑93 (MQ=255)
                            gaTCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCAc                                                            >  2:438334/1‑93 (MQ=255)
                              tCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCg                                                          >  1:6161652/1‑93 (MQ=255)
                               cccccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGt                                                         <  2:5046430/93‑1 (MQ=255)
                               cccccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGt                                                         >  1:1982840/1‑93 (MQ=255)
                                 cccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGttt                                                       >  2:497436/1‑92 (MQ=255)
                                 cccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTc                                                       >  2:1105839/1‑93 (MQ=255)
                                  ccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCCCCACCCTGGGTGGCTGCAATCATCGCTTCCACCGTTcc                                                      <  2:3900391/93‑1 (MQ=255)
                                  ccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTcc                                                      <  2:5324409/93‑1 (MQ=255)
                                  ccAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTcc                                                      >  1:1198594/1‑93 (MQ=255)
                                     aCTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTc                                                   <  2:3865014/93‑1 (MQ=255)
                                         gCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGccc                                               >  1:1054566/1‑92 (MQ=255)
                                         gCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGccc                                               >  2:2557848/1‑92 (MQ=255)
                                          cATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCAc                                              >  1:2605453/1‑93 (MQ=255)
                                          cATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCAc                                              <  1:3360419/93‑1 (MQ=255)
                                            ttCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCg                                            >  2:4306717/1‑93 (MQ=255)
                                              cACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTc                                          >  2:2211170/1‑93 (MQ=255)
                                              cACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTc                                          <  1:4728217/93‑1 (MQ=255)
                                               aCTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCg                                         >  1:904535/1‑93 (MQ=255)
                                               aCTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCg                                         >  1:4040871/1‑93 (MQ=255)
                                                cTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCgg                                        >  1:6222049/1‑93 (MQ=255)
                                                cTTTCTCGCCCAGCGCCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCgg                                        >  2:4863150/1‑93 (MQ=255)
                                                 tttCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGc                                       >  1:7536797/1‑93 (MQ=255)
                                                 tttCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGc                                       >  2:6400613/1‑93 (MQ=255)
                                                    ctcGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAAc                                    <  2:3309808/93‑1 (MQ=255)
                                                     tcGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAAcc                                   <  2:8782995/93‑1 (MQ=255)
                                                     tcGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAAcc                                   >  1:3122616/1‑93 (MQ=255)
                                                       ggccACCGGCGCTGTATCCCAGGCGTGACGTGCACCTCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCgg                                 <  2:8588055/91‑1 (MQ=255)
                                                         ccAGCGGCCCTGTAACCCAGGCTTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGaa                               <  2:6900047/93‑1 (MQ=255)
                                                         ccAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGaa                               >  1:6565852/1‑93 (MQ=255)
                                                         ccAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGaa                               >  1:625018/1‑93 (MQ=255)
                                                         ccAGCGGCCCTGTAAACCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGaa                               <  1:8395783/93‑1 (MQ=255)
                                                           cgCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACa                             <  1:2250787/92‑1 (MQ=255)
                                                           cgCGGCCATGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACa                             <  2:6661541/92‑1 (MQ=255)
                                                           aGCGGCCCTGTAACCCAGGCGTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACa                             <  1:2410718/93‑1 (MQ=255)
                                                             cGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGa                           <  1:6019712/93‑1 (MQ=255)
                                                              ggCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACAGTCGGCAACCGGAACAGaa                          >  1:2666245/1‑93 (MQ=255)
                                                               gCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGaaa                         <  2:7125601/93‑1 (MQ=255)
                                                               gCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGaaa                         >  1:3800563/1‑93 (MQ=255)
                                                                cccTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAc                        <  1:4185463/93‑1 (MQ=255)
                                                                cccTGTAACCCAGGCGTGACGTTCACCCCCCTGGGGGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAc                        <  1:531847/93‑1 (MQ=255)
                                                                 ccTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACg                       >  1:300073/1‑93 (MQ=255)
                                                                  cTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGt                      >  1:5379804/1‑93 (MQ=255)
                                                                    ttAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTAc                    <  2:6786273/92‑1 (MQ=255)
                                                                    gTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTAc                    <  2:5479190/93‑1 (MQ=255)
                                                                     tAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACt                   <  1:4506906/93‑1 (MQ=255)
                                                                        cccAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACtgtg                <  1:5104430/93‑1 (MQ=255)
                                                                         ccAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGc               >  2:3012776/1‑93 (MQ=255)
                                                                         ccAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGc               <  1:4234197/93‑1 (MQ=255)
                                                                          cAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCa              <  2:7196055/93‑1 (MQ=255)
                                                                           aGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCAt             >  2:5915083/1‑93 (MQ=255)
                                                                            ggCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATc            >  2:2889014/1‑93 (MQ=255)
                                                                             gCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCa           <  2:2137525/93‑1 (MQ=255)
                                                                              cGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAg          <  2:5109730/93‑1 (MQ=255)
                                                                               gTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAgg         <  1:3284971/93‑1 (MQ=255)
                                                                               gTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAgg         >  2:369969/1‑93 (MQ=255)
                                                                                tGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGa        >  1:5571922/1‑93 (MQ=255)
                                                                                 gACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTGGGCAACCGGAACAGAAACGTACTGTGCATCAGGaa       <  2:8686276/93‑1 (MQ=255)
                                                                                    gTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGaaaaa    <  1:3723529/93‑1 (MQ=255)
                                                                                    gTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGaaaaa    <  2:7272979/93‑1 (MQ=255)
                                                                                    gTTCACCCCCCTAGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGaaaaa    <  1:2851037/93‑1 (MQ=255)
                                                                                     ttCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAAt   <  2:8299544/93‑1 (MQ=255)
                                                                                         |                                                                                         
CAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATT  >  NC_000913/3269147‑3269325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATTTCCC  >  NC_000913/3269143‑3269329
                                                                                             |                                                                                             
ATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAC                                                                                               <  SRR4302541.6711226/94‑1 (MQ=60)
ATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAC                                                                                               >  SRR4302541.1301742/1‑94 (MQ=60)
   TCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCC                                                                                            >  SRR4302541.5220314/1‑94 (MQ=60)
   TCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCC                                                                                            >  SRR4302541.3195356/1‑94 (MQ=60)
    CAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCC                                                                                           <  SRR4302541.5089912/94‑1 (MQ=60)
    CAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCC                                                                                           >  SRR4302541.2296191/1‑94 (MQ=60)
     AATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCC                                                                                          >  SRR4302541.6642955/1‑94 (MQ=60)
     AATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCC                                                                                          >  SRR4302541.6178051/1‑94 (MQ=60)
     AATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGAGGCCCTGTAACCCAGGCGTGACGTTCACCCCCC                                                                                          >  SRR4302541.8785866/1‑94 (MQ=60)
      ATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCT                                                                                         <  SRR4302541.3952518/94‑1 (MQ=60)
      ATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCT                                                                                         >  SRR4302541.1889556/1‑94 (MQ=60)
      ATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCT                                                                                         <  SRR4302541.4275095/94‑1 (MQ=60)
      ATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCT                                                                                         <  SRR4302541.6739919/94‑1 (MQ=60)
      ATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCT                                                                                         >  SRR4302541.5369148/1‑94 (MQ=60)
      ATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCT                                                                                         >  SRR4302541.7848752/1‑94 (MQ=60)
      ATAAACCCGGTTTTG‑CATCGCCGGAGATCCCCTAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTG                                                                                        <  SRR4302541.5875597/94‑1 (MQ=60)
       TAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTG                                                                                        <  SRR4302541.3552507/94‑1 (MQ=60)
        AAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGG                                                                                       >  SRR4302541.375934/1‑94 (MQ=60)
        AAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGG                                                                                       <  SRR4302541.6786677/94‑1 (MQ=60)
        AAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGG                                                                                       >  SRR4302541.7179329/1‑94 (MQ=60)
        AAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGG                                                                                       >  SRR4302541.5659637/1‑94 (MQ=60)
         AACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGT                                                                                      >  SRR4302541.1438625/1‑94 (MQ=60)
         AACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGG                                                                                      >  SRR4302541.355656/1‑94 (MQ=60)
         AACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGG                                                                                      >  SRR4302541.2733879/1‑94 (MQ=60)
         AACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCAATTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGG                                                                                      >  SRR4302541.3726857/1‑94 (MQ=60)
            GCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGG                                                                                   <  SRR4302541.6860722/94‑1 (MQ=60)
            GCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGG                                                                                   >  SRR4302541.6186281/1‑94 (MQ=60)
              GGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCT                                                                                 >  SRR4302541.2848081/1‑94 (MQ=60)
              GGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCT                                                                                 >  SRR4302541.789966/1‑94 (MQ=60)
              GGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCT                                                                                 >  SRR4302541.2706344/1‑94 (MQ=60)
               GTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTG                                                                                <  SRR4302541.4464751/94‑1 (MQ=60)
                 TTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAGCCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCA                                                                              <  SRR4302541.2147439/94‑1 (MQ=60)
                 TTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCA                                                                              >  SRR4302541.7778624/1‑94 (MQ=60)
                 TTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCA                                                                              >  SRR4302541.2376246/1‑94 (MQ=60)
                  TTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAA                                                                             <  SRR4302541.4957175/94‑1 (MQ=60)
                   TGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAAT                                                                            >  SRR4302541.390166/1‑94 (MQ=60)
                    GCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATC                                                                           <  SRR4302541.3834974/94‑1 (MQ=60)
                    GCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATC                                                                           <  SRR4302541.1882876/94‑1 (MQ=60)
                     CCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCA                                                                          >  SRR4302541.2128958/1‑94 (MQ=60)
                     CCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCACAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCA                                                                          <  SRR4302541.2419371/94‑1 (MQ=60)
                      CATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCAT                                                                         >  SRR4302541.8340053/1‑94 (MQ=60)
                      CATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCAT                                                                         <  SRR4302541.8328382/94‑1 (MQ=60)
                      CATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCAT                                                                         >  SRR4302541.939772/1‑94 (MQ=60)
                       ATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATC                                                                        <  SRR4302541.757813/94‑1 (MQ=60)
                        TCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCG                                                                       <  SRR4302541.2193362/94‑1 (MQ=60)
                        TCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCG                                                                       <  SRR4302541.4383894/94‑1 (MQ=60)
                         CGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGC                                                                      >  SRR4302541.7961823/1‑94 (MQ=60)
                          GCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCT                                                                     >  SRR4302541.4370370/1‑94 (MQ=60)
                          GCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCT                                                                     >  SRR4302541.7343187/1‑94 (MQ=60)
                          GCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCT                                                                     <  SRR4302541.6431862/94‑1 (MQ=60)
                          GCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCT                                                                     >  SRR4302541.7752246/1‑94 (MQ=60)
                            CGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCCGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTCGGTGGCTGCAATCATCGCTTC                                                                   >  SRR4302541.6142425/1‑94 (MQ=60)
                            CGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTC                                                                   >  SRR4302541.8153007/1‑94 (MQ=60)
                            CGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTC                                                                   >  SRR4302541.5374620/1‑94 (MQ=60)
                            CGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTC                                                                   <  SRR4302541.7483968/94‑1 (MQ=60)
                             GGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCC                                                                  <  SRR4302541.2083193/94‑1 (MQ=60)
                             GGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCC                                                                  >  SRR4302541.2354740/1‑94 (MQ=60)
                               AGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCAC                                                                >  SRR4302541.7104577/1‑94 (MQ=60)
                               AGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCAC                                                                >  SRR4302541.4701472/1‑94 (MQ=60)
                                GATCCCCCAACTGGCATTCACTTTCTCCCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACC                                                               >  SRR4302541.2645659/1‑94 (MQ=60)
                                 ATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCG                                                              >  SRR4302541.6224619/1‑94 (MQ=60)
                                 ATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCG                                                              <  SRR4302541.6022285/94‑1 (MQ=60)
                                 ATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCG                                                              >  SRR4302541.3227192/1‑94 (MQ=60)
                                  TCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGT                                                             >  SRR4302541.2764829/1‑94 (MQ=60)
                                  TCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGT                                                             >  SRR4302541.7040042/1‑94 (MQ=60)
                                  TCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGT                                                             >  SRR4302541.2002005/1‑94 (MQ=60)
                                    CCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTC                                                           >  SRR4302541.2334771/1‑94 (MQ=60)
                                     CCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCC                                                          >  SRR4302541.6413908/1‑94 (MQ=60)
                                     CCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCC                                                          >  SRR4302541.3386817/1‑94 (MQ=60)
                                     CCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCC                                                          >  SRR4302541.1210220/1‑94 (MQ=60)
                                      CCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCT                                                         <  SRR4302541.6652990/94‑1 (MQ=60)
                                      CCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCT                                                         <  SRR4302541.6262910/94‑1 (MQ=60)
                                      CCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCT                                                         >  SRR4302541.5208563/1‑94 (MQ=60)
                                       CAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTT                                                        >  SRR4302541.924336/1‑94 (MQ=60)
                                       CAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTT                                                        <  SRR4302541.4524580/94‑1 (MQ=60)
                                        AACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTC                                                       <  SRR4302541.8879118/94‑1 (MQ=60)
                                         ACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCG                                                      >  SRR4302541.7966830/1‑94 (MQ=60)
                                         ACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCG                                                      >  SRR4302541.6293027/1‑94 (MQ=60)
                                          CTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGC                                                     >  SRR4302541.8139497/1‑94 (MQ=60)
                                            GGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCC                                                   >  SRR4302541.1064364/1‑94 (MQ=60)
                                             GCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCAC                                                  >  SRR4302541.2631525/1‑94 (MQ=60)
                                              CATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACC                                                 >  SRR4302541.4208865/1‑94 (MQ=60)
                                              CATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACC                                                 <  SRR4302541.3393951/94‑1 (MQ=60)
                                              CATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACC                                                 >  SRR4302541.123250/1‑94 (MQ=60)
                                               ATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCG                                                <  SRR4302541.4266169/94‑1 (MQ=60)
                                               ATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCG                                                >  SRR4302541.302568/1‑94 (MQ=60)
                                               ATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCG                                                >  SRR4302541.8342479/1‑94 (MQ=60)
                                                 TCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTC                                              >  SRR4302541.106872/1‑94 (MQ=60)
                                                 TCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTC                                              <  SRR4302541.259060/94‑1 (MQ=60)
                                                 TCACTGTCTCGCCCAGCGGCCCTGTACCCCAGGCGTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTC                                              <  SRR4302541.6402517/94‑1 (MQ=60)
                                                  CACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCG                                             >  SRR4302541.912927/1‑94 (MQ=60)
                                                  CACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCG                                             <  SRR4302541.4776464/94‑1 (MQ=60)
                                                  CACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCG                                             >  SRR4302541.4080772/1‑94 (MQ=60)
                                                   ACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGG                                            >  SRR4302541.6285625/1‑94 (MQ=60)
                                                    CTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGC                                           >  SRR4302541.7617355/1‑94 (MQ=60)
                                                      TTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAA                                         >  SRR4302541.3319055/1‑94 (MQ=60)
                                                      TTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGGTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCCCCGTCGGCAA                                         >  SRR4302541.3421331/1‑94 (MQ=60)
                                                       TCTCGCCAAACGGCCCTGTAGCCGATGCGTGTCGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAAC                                        <  SRR4302541.6258711/94‑1 (MQ=60)
                                                        CTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACC                                       <  SRR4302541.8313532/94‑1 (MQ=60)
                                                        CTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACC                                       >  SRR4302541.7082146/1‑94 (MQ=60)
                                                        CTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACC                                       >  SRR4302541.3154202/1‑94 (MQ=60)
                                                            CCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAA                                   >  SRR4302541.630891/1‑94 (MQ=60)
                                                            CCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAA                                   >  SRR4302541.6633010/1‑94 (MQ=60)
                                                            CCCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAA                                   >  SRR4302541.756142/1‑94 (MQ=60)
                                                             CCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAAC                                  >  SRR4302541.1634306/1‑94 (MQ=60)
                                                             CCAGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAAC                                  >  SRR4302541.595735/1‑94 (MQ=60)
                                                             CCAGCGGCCCTGTAAACCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAAC                                  <  SRR4302541.8486651/94‑1 (MQ=60)
                                                              CAGCGGCCCTGTAACCCAGGCGTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACA                                 <  SRR4302541.6467695/94‑1 (MQ=60)
                                                               CGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAG                                <  SRR4302541.2272538/94‑1 (MQ=60)
                                                               AGCGGCCCTGTAACCCAGGCGTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAG                                <  SRR4302541.2434425/94‑1 (MQ=60)
                                                               AGCGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGGGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAA                                >  SRR4302541.838240/1‑94 (MQ=60)
                                                                 CGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAA                              <  SRR4302541.6081407/94‑1 (MQ=60)
                                                                 CGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAA                              >  SRR4302541.5241512/1‑94 (MQ=60)
                                                                 CGGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACAGTCGGCAACCGGAACAGAA                              >  SRR4302541.2692748/1‑94 (MQ=60)
                                                                  GGCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAA                             >  SRR4302541.3838815/1‑94 (MQ=60)
                                                                   GCCCTGTATCACAGGCGTTACGTTCACCCCCCTGGTTGGCTGGAATCATCGCTTCCGCCTTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAC                            <  SRR4302541.6615191/94‑1 (MQ=60)
                                                                   GCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAC                            <  SRR4302541.6615192/94‑1 (MQ=60)
                                                                   GCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAC                            <  SRR4302541.6193302/94‑1 (MQ=60)
                                                                   GCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAC                            >  SRR4302541.4481821/1‑94 (MQ=60)
                                                                   GCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAC                            <  SRR4302541.5540903/94‑1 (MQ=60)
                                                                   GCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAC                            <  SRR4302541.1526363/94‑1 (MQ=60)
                                                                   GCCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAC                            <  SRR4302541.1105448/94‑1 (MQ=60)
                                                                    CCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACG                           >  SRR4302541.302704/1‑94 (MQ=60)
                                                                    CCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACG                           <  SRR4302541.4226990/94‑1 (MQ=60)
                                                                    CCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACG                           >  SRR4302541.4723579/1‑94 (MQ=60)
                                                                    CCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACG                           <  SRR4302541.536837/94‑1 (MQ=60)
                                                                    CCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATAGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGCACAGAAACG                           >  SRR4302541.5157876/1‑94 (MQ=60)
                                                                    CCCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGGGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACG                           <  SRR4302541.536836/94‑1 (MQ=60)
                                                                     CCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGT                          >  SRR4302541.5435021/1‑94 (MQ=60)
                                                                     CCTGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGT                          >  SRR4302541.3128044/1‑94 (MQ=60)
                                                                       TGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTAC                        >  SRR4302541.5378445/1‑94 (MQ=60)
                                                                       TGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTAC                        >  SRR4302541.2055692/1‑94 (MQ=60)
                                                                       CGTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTAC                        <  SRR4302541.6818111/94‑1 (MQ=60)
                                                                        GTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACT                       >  SRR4302541.5722559/1‑94 (MQ=60)
                                                                        GTAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACT                       <  SRR4302541.3495251/94‑1 (MQ=60)
                                                                         TAACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTG                      <  SRR4302541.4552377/94‑1 (MQ=60)
                                                                          AACCCAGGCGTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTGCGCCAGCGTCGGCCACCGGAACggacaggtaatgg                     >  SRR4302541.2925402/1‑81 (MQ=60)
                                                                           ACCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTG                    <  SRR4302541.141001/94‑1 (MQ=60)
                                                                            CCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGC                   >  SRR4302541.8180753/1‑94 (MQ=60)
                                                                            CCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGC                   >  SRR4302541.4209387/1‑94 (MQ=60)
                                                                            CCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGC                   <  SRR4302541.5156872/94‑1 (MQ=60)
                                                                            CCCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGC                   <  SRR4302541.610698/94‑1 (MQ=60)
                                                                             CCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCA                  <  SRR4302541.4276401/94‑1 (MQ=60)
                                                                             CCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCA                  >  SRR4302541.5546970/1‑94 (MQ=60)
                                                                             CCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCA                  >  SRR4302541.7505781/1‑94 (MQ=60)
                                                                             CCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCA                  <  SRR4302541.401083/94‑1 (MQ=60)
                                                                             CCAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCA                  <  SRR4302541.6287855/94‑1 (MQ=60)
                                                                              CAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCAT                 <  SRR4302541.3118190/94‑1 (MQ=60)
                                                                              CAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCAT                 >  SRR4302541.920430/1‑94 (MQ=60)
                                                                              CAGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCAC                 >  SRR4302541.6736813/1‑94 (MQ=60)
                                                                               AGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATC                >  SRR4302541.2723928/1‑94 (MQ=60)
                                                                               AGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATC                >  SRR4302541.2990514/1‑94 (MQ=60)
                                                                               AGGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATC                >  SRR4302541.1896138/1‑94 (MQ=60)
                                                                                GGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCA               >  SRR4302541.6122241/1‑94 (MQ=60)
                                                                                GGCGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCA               >  SRR4302541.8836190/1‑94 (MQ=60)
                                                                                  CGTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAAAGTACTGTGCTTCAGG             >  SRR4302541.209596/1‑94 (MQ=60)
                                                                                  CCTGACGTTCCCCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGG             <  SRR4302541.4489774/94‑1 (MQ=60)
                                                                                   GTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGA            <  SRR4302541.2647256/94‑1 (MQ=60)
                                                                                   GTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGA            >  SRR4302541.5628967/1‑94 (MQ=60)
                                                                                   GTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGA            <  SRR4302541.2648633/94‑1 (MQ=60)
                                                                                   GTGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGA            <  SRR4302541.3318072/94‑1 (MQ=60)
                                                                                   GGGACGTTCACCCCCCTGGGTGCCTGCAATCATCCCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGA            <  SRR4302541.2577594/94‑1 (MQ=60)
                                                                                    TGACTTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAA           <  SRR4302541.8510711/94‑1 (MQ=60)
                                                                                    TGACGTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAA           <  SRR4302541.8743338/94‑1 (MQ=60)
                                                                                        GTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAAT       >  SRR4302541.7699529/1‑94 (MQ=60)
                                                                                        GTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAAT       >  SRR4302541.3195073/1‑94 (MQ=60)
                                                                                        GTTCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAAT       <  SRR4302541.3761049/94‑1 (MQ=60)
                                                                                        GTTCACCCCCCTAGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAAT       <  SRR4302541.2879708/94‑1 (MQ=60)
                                                                                          TCACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATTT     >  SRR4302541.1949842/1‑94 (MQ=60)
                                                                                           CACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATTTC    >  SRR4302541.2719310/1‑94 (MQ=60)
                                                                                            ACCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATTTCC   >  SRR4302541.8335956/1‑94 (MQ=60)
                                                                                             CCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATTTCCC  <  SRR4302541.740348/94‑1 (MQ=60)
                                                                                             CCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATTTCCC  >  SRR4302541.4963173/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATTTCAATAAACGCGGTTTTGCCATCGCCGGAGATCCCCCAACTGGCATTCACTTTCTCGCCCAGCGGCCCTGTAACCCAGGCGTGACGTTCAGCCCCCTGGGTGGCTGCAATCATCGCTTCCACCGTTCCTTCGCCACCGTCGGCAACCGGAACAGAAACGTACTGTGCATCAGGAAAAATTTCCC  >  NC_000913/3269143‑3269329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑