Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,670,236 T→C Y89H (TAT→CAT)  yhjC → putative transcriptional regulator LYSR‑type

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,670,2360TC99.8% 1387.3 / ‑6.2 400Y89H (TAT→CAT) yhjCputative transcriptional regulator LYSR‑type
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (183/216);  total (184/216)
Fisher's exact test for biased strand distribution p-value = 4.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 432 total aligned reads displayed.

CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATT  >  NC_000913/3670146‑3670324
                                                                                          |                                                                                        
  ccAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACCCCAGAAGGCATGACCcatta                                                                                      >  1:902147/1‑93 (MQ=255)
   cAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCcattat                                                                                     <  1:5207390/93‑1 (MQ=255)
    aGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATc                                                                                    >  2:1256738/1‑93 (MQ=255)
     gATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCCGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCa                                                                                   >  2:3846419/1‑93 (MQ=255)
     gATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCa                                                                                   <  2:8806409/93‑1 (MQ=255)
     gATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCa                                                                                   >  1:1672203/1‑93 (MQ=255)
       tACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAAc                                                                                 >  1:1803717/1‑93 (MQ=255)
       tACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAAc                                                                                 <  1:6218326/93‑1 (MQ=255)
        aCAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACg                                                                                <  2:4594383/93‑1 (MQ=255)
         cAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGa                                                                               <  2:1139948/93‑1 (MQ=255)
         cAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGa                                                                               <  2:2571296/93‑1 (MQ=255)
         cAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGa                                                                               <  1:681773/93‑1 (MQ=255)
          aGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAg                                                                              >  1:2183096/1‑93 (MQ=255)
             cACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCaa                                                                           <  1:992670/93‑1 (MQ=255)
              aCTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCaaa                                                                          >  1:4193451/1‑93 (MQ=255)
               cTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCaaaa                                                                         >  1:4030566/1‑93 (MQ=255)
               cTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATCATCAACGAGCaaaa                                                                         >  1:7827478/1‑93 (MQ=255)
                   aaCATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtg                                                                     >  2:806430/1‑93 (MQ=255)
                   aaCATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtg                                                                     >  1:2355251/1‑93 (MQ=255)
                   aaCATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtg                                                                     <  2:2216188/93‑1 (MQ=255)
                      aTCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATgtgt                                                                  >  2:8298114/1‑93 (MQ=255)
                       tCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGtt                                                                 >  2:7775126/1‑93 (MQ=255)
                       tCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGtt                                                                 >  2:3128292/1‑93 (MQ=255)
                        cAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTg                                                                <  1:4013152/93‑1 (MQ=255)
                             tGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTaa                                                           >  1:7413284/1‑93 (MQ=255)
                              ggCCCCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAt                                                          <  1:6616643/93‑1 (MQ=255)
                              ggCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAt                                                          >  2:2323774/1‑93 (MQ=255)
                              ggCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAt                                                          <  1:5688881/93‑1 (MQ=255)
                                cACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAtct                                                        <  1:2658232/93‑1 (MQ=255)
                                cACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAtct                                                        <  1:4831504/93‑1 (MQ=255)
                                 aCCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAtctc                                                       >  1:2839162/1‑93 (MQ=255)
                                  cccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCa                                                      <  1:8427402/93‑1 (MQ=255)
                                  cccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCa                                                      >  1:7114317/1‑93 (MQ=255)
                                   ccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAg                                                     <  1:3695835/93‑1 (MQ=255)
                                   ccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAg                                                     <  2:8564441/93‑1 (MQ=255)
                                   ccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAg                                                     >  1:3599446/1‑93 (MQ=255)
                                    cAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGc                                                    >  1:8157125/1‑93 (MQ=255)
                                     aGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCg                                                   >  2:2668555/1‑93 (MQ=255)
                                      gCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGa                                                  >  2:76692/1‑93 (MQ=255)
                                       cTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGaa                                                 >  2:277854/1‑93 (MQ=255)
                                       cTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGaa                                                 >  2:1367613/1‑93 (MQ=255)
                                       cTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGaa                                                 >  2:1597873/1‑93 (MQ=255)
                                        ttCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAGAAGATGTGTTGAGTAATCTCAGCGAAc                                                >  2:8663795/1‑93 (MQ=255)
                                         tctcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACt                                               >  1:3349470/1‑93 (MQ=255)
                                         tctcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACt                                               >  1:326711/1‑93 (MQ=255)
                                         tctcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACt                                               <  2:5064151/93‑1 (MQ=255)
                                           tcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTgg                                             <  2:5683546/93‑1 (MQ=255)
                                           tcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTgg                                             <  1:5425151/93‑1 (MQ=255)
                                            ccAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGa                                            <  1:4598008/93‑1 (MQ=255)
                                             cAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGAc                                           <  1:5110069/93‑1 (MQ=255)
                                              cgcgcACCCCGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACg                                          <  2:6709005/92‑1 (MQ=255)
                                               acgcACCGCGCGGCGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAATAGATGTGTTGAGTAATCTCAGGGAACTGTACgg                                         <  2:2454385/92‑1 (MQ=255)
                                                  caccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCt                                      >  2:5306609/1‑93 (MQ=255)
                                                  caccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCt                                      >  2:618959/1‑93 (MQ=255)
                                                   cccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTg                                     <  1:6032676/92‑1 (MQ=255)
                                                   accacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTg                                     >  2:2404793/1‑93 (MQ=255)
                                                   accacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTg                                     >  2:5802887/1‑93 (MQ=255)
                                                    ccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGt                                    <  1:1213054/93‑1 (MQ=255)
                                                    ccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGt                                    >  1:2940149/1‑93 (MQ=255)
                                                     cacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGtt                                   <  1:1054034/93‑1 (MQ=255)
                                                      acGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGttt                                  <  1:5260569/93‑1 (MQ=255)
                                                      acGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTATGttt                                  >  1:1960707/1‑93 (MQ=255)
                                                       cgcgACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTc                                 >  1:4471961/1‑93 (MQ=255)
                                                        gcgACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCa                                >  2:2907343/1‑93 (MQ=255)
                                                          gACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAAc                              <  2:2056948/93‑1 (MQ=255)
                                                           aCGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACa                             >  1:5535407/1‑93 (MQ=255)
                                                            cGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAg                            <  1:1536064/93‑1 (MQ=255)
                                                            cGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAg                            <  2:4195647/93‑1 (MQ=255)
                                                              ggTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTGAACAGGa                          <  1:6425597/93‑1 (MQ=255)
                                                              ggTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGa                          <  1:824320/93‑1 (MQ=255)
                                                              ggTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGa                          <  2:6372272/93‑1 (MQ=255)
                                                              ggTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGa                          >  2:4357208/1‑93 (MQ=255)
                                                                tCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGTACTGGACGGTCTGTTTCAACatgatg                        >  2:184977/1‑93 (MQ=255)
                                                                tCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATg                        >  1:4972886/1‑93 (MQ=255)
                                                                   aaCTCACGCCAGAAGGCATGACCCATTATCAACGCGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGcaa                     >  2:3065866/1‑91 (MQ=255)
                                                                    aCTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGccac                    <  1:6374236/93‑1 (MQ=255)
                                                                    aCTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGccac                    <  2:374626/93‑1 (MQ=255)
                                                                      tCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGccacca                  >  2:4815723/1‑93 (MQ=255)
                                                                       cACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAg                 <  1:4710525/93‑1 (MQ=255)
                                                                        aCGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGt                >  2:8476784/1‑93 (MQ=255)
                                                                         cGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTa               >  2:7506954/1‑93 (MQ=255)
                                                                            cAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCa            <  2:6986966/93‑1 (MQ=255)
                                                                            cAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCa            >  2:1992985/1‑93 (MQ=255)
                                                                            cAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCa            >  1:7923742/1‑93 (MQ=255)
                                                                            cAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCa            >  1:5939554/1‑93 (MQ=255)
                                                                            cAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCa            <  2:394931/93‑1 (MQ=255)
                                                                              gAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGc          >  1:3825712/1‑93 (MQ=255)
                                                                              gAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGc          <  1:3159794/93‑1 (MQ=255)
                                                                               aaGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCg         >  2:5990402/1‑93 (MQ=255)
                                                                               aaGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCg         <  2:6452134/93‑1 (MQ=255)
                                                                                aGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCgg        >  1:135053/1‑93 (MQ=255)
                                                                                  gCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTa      >  1:8700340/1‑93 (MQ=255)
                                                                                   cATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTaa     >  2:4494168/1‑93 (MQ=255)
                                                                                   cATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTaa     >  2:175287/1‑93 (MQ=255)
                                                                                    aTGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTaaa    <  1:7199201/93‑1 (MQ=255)
                                                                                    aTGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTaaa    <  1:7587806/93‑1 (MQ=255)
                                                                                    aTGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTaaa    >  2:7186203/1‑93 (MQ=255)
                                                                                    aTGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGACTGTTTCAACAGGATGCCACCAGTATCAGCGGTaaa    >  1:2262861/1‑93 (MQ=255)
                                                                                     tGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAt   <  1:4565218/93‑1 (MQ=255)
                                                                                     tGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAt   <  2:3461868/93‑1 (MQ=255)
                                                                                          |                                                                                        
CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATT  >  NC_000913/3670146‑3670324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 243 total aligned reads displayed.
CGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC  >  NC_000913/3670144‑3670328
                                                                                            |                                                                                            
ccccCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCA                                                                                             <  SRR4302541.4877633/90‑1 (MQ=60)
CGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCA                                                                                             <  SRR4302541.4877637/94‑1 (MQ=60)
 GCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCAT                                                                                            <  SRR4302541.986000/94‑1 (MQ=60)
 GCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCAT                                                                                            <  SRR4302541.4174893/94‑1 (MQ=60)
 GCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCAT                                                                                            >  SRR4302541.3992046/1‑94 (MQ=60)
 GCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCAT                                                                                            <  SRR4302541.3864534/94‑1 (MQ=60)
 GCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCAT                                                                                            <  SRR4302541.3660485/94‑1 (MQ=60)
 GCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCAT                                                                                            <  SRR4302541.7997371/94‑1 (MQ=60)
  CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATT                                                                                           >  SRR4302541.4635017/1‑94 (MQ=60)
   GCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTA                                                                                          <  SRR4302541.7088184/94‑1 (MQ=60)
   GCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTA                                                                                          >  SRR4302541.309687/1‑94 (MQ=60)
   GCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTA                                                                                          <  SRR4302541.6489582/94‑1 (MQ=60)
   GCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACCCCAGAAGGCATGACCCATTA                                                                                          >  SRR4302541.910513/1‑94 (MQ=60)
    CCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTAT                                                                                         <  SRR4302541.1475703/94‑1 (MQ=60)
    CCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTAT                                                                                         <  SRR4302541.7786/94‑1 (MQ=60)
    CCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTAT                                                                                         <  SRR4302541.3502137/94‑1 (MQ=60)
    CCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTAT                                                                                         >  SRR4302541.964149/1‑94 (MQ=60)
     CAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATC                                                                                        <  SRR4302541.5261040/94‑1 (MQ=60)
     CAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATC                                                                                        >  SRR4302541.1918315/1‑94 (MQ=60)
     CAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATC                                                                                        <  SRR4302541.5340659/94‑1 (MQ=60)
      AGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCA                                                                                       <  SRR4302541.8694833/94‑1 (MQ=60)
      AGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCA                                                                                       >  SRR4302541.1688677/1‑94 (MQ=60)
      AGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCA                                                                                       >  SRR4302541.1395295/1‑94 (MQ=60)
      AGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCA                                                                                       <  SRR4302541.1981919/94‑1 (MQ=60)
        ATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAAC                                                                                     >  SRR4302541.7244116/1‑94 (MQ=60)
        ATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAAC                                                                                     <  SRR4302541.3531314/94‑1 (MQ=60)
         TACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACG                                                                                    >  SRR4302541.2143484/1‑94 (MQ=60)
         TACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACG                                                                                    <  SRR4302541.6281874/94‑1 (MQ=60)
         TACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACG                                                                                    <  SRR4302541.6453359/94‑1 (MQ=60)
          ACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGA                                                                                   >  SRR4302541.8026663/1‑94 (MQ=60)
          ACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGA                                                                                   <  SRR4302541.5493322/94‑1 (MQ=60)
           CAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCCAACTCACGCCAGAAGGCATGACCACTTATCACCGAG                                                                                  >  SRR4302541.1162212/1‑94 (MQ=60)
           CAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAG                                                                                  >  SRR4302541.2204199/1‑94 (MQ=60)
           CAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAG                                                                                  <  SRR4302541.688206/94‑1 (MQ=60)
             GGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCA                                                                                <  SRR4302541.2785841/94‑1 (MQ=60)
              GCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAA                                                                               <  SRR4302541.6168176/94‑1 (MQ=60)
               CACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCACA                                                                              >  SRR4302541.3701229/1‑94 (MQ=60)
               CACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAA                                                                              >  SRR4302541.4235090/1‑94 (MQ=60)
               CACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAA                                                                              <  SRR4302541.1001912/94‑1 (MQ=60)
                ACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAA                                                                             >  SRR4302541.2251258/1‑94 (MQ=60)
                ACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAA                                                                             >  SRR4302541.4070381/1‑94 (MQ=60)
                 CTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAG                                                                            >  SRR4302541.5975967/1‑94 (MQ=60)
                 CTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAG                                                                            >  SRR4302541.7972731/1‑94 (MQ=60)
                  TGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGA                                                                           >  SRR4302541.3948384/1‑94 (MQ=60)
                  TGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGA                                                                           >  SRR4302541.1585059/1‑94 (MQ=60)
                  TGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCAACGGGCCAAACTCACGCCAGAAGGCATGACCCATTATCAACAAGCAAAAGA                                                                           >  SRR4302541.7138441/1‑94 (MQ=60)
                  CGGAACACCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGA                                                                           <  SRR4302541.2918578/94‑1 (MQ=60)
                   GGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAT                                                                          <  SRR4302541.3789373/94‑1 (MQ=60)
                   GGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAT                                                                          <  SRR4302541.1748215/94‑1 (MQ=60)
                    GAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATG                                                                         >  SRR4302541.7734312/1‑94 (MQ=60)
                     AACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGT                                                                        <  SRR4302541.4823564/94‑1 (MQ=60)
                     AACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGT                                                                        >  SRR4302541.5557470/1‑94 (MQ=60)
                     AACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGT                                                                        <  SRR4302541.4944402/94‑1 (MQ=60)
                     AACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGT                                                                        >  SRR4302541.8162111/1‑94 (MQ=60)
                      ACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTG                                                                       <  SRR4302541.522409/94‑1 (MQ=60)
                       CATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGT                                                                      <  SRR4302541.680891/94‑1 (MQ=60)
                        ATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTT                                                                     <  SRR4302541.2586470/94‑1 (MQ=60)
                         TCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                    <  SRR4302541.411260/94‑1 (MQ=60)
                         TCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                    <  SRR4302541.3205773/94‑1 (MQ=60)
                         TCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                    <  SRR4302541.7950031/94‑1 (MQ=60)
                         TCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                    <  SRR4302541.2756608/94‑1 (MQ=60)
                         TCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                    <  SRR4302541.1894920/94‑1 (MQ=60)
                         TCAACTTGGCACCCAGCTTATCCCGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGAATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                    <  SRR4302541.7922915/94‑1 (MQ=60)
                          CAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGA                                                                   <  SRR4302541.1687709/94‑1 (MQ=60)
                          CAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGA                                                                   <  SRR4302541.4052840/94‑1 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  <  SRR4302541.837511/94‑1 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  >  SRR4302541.5209666/1‑94 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  >  SRR4302541.2326729/1‑94 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  >  SRR4302541.5209665/1‑94 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  <  SRR4302541.1303325/94‑1 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  <  SRR4302541.966381/94‑1 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  >  SRR4302541.3689258/1‑94 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                  <  SRR4302541.8656934/94‑1 (MQ=60)
                           AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATAAACGAGCAAAAGATGTGTTGAG                                                                  >  SRR4302541.2326728/1‑94 (MQ=60)
                            ACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGT                                                                 <  SRR4302541.7549130/94‑1 (MQ=60)
                            ACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGT                                                                 <  SRR4302541.5487010/94‑1 (MQ=60)
                              TTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAA                                                               >  SRR4302541.3404607/1‑94 (MQ=60)
                              TTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAA                                                               <  SRR4302541.1608841/94‑1 (MQ=60)
                              TTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAA                                                               <  SRR4302541.4030041/94‑1 (MQ=60)
                              TTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAA                                                               >  SRR4302541.7492570/1‑94 (MQ=60)
                               TGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAT                                                              <  SRR4302541.4385713/94‑1 (MQ=60)
                               TGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAT                                                              <  SRR4302541.4409060/94‑1 (MQ=60)
                                GGCCCCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATC                                                             <  SRR4302541.6684454/94‑1 (MQ=60)
                                GGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATC                                                             <  SRR4302541.1253128/94‑1 (MQ=60)
                                GGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATC                                                             <  SRR4302541.6724875/94‑1 (MQ=60)
                                GGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATC                                                             <  SRR4302541.5746919/94‑1 (MQ=60)
                                 GCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCT                                                            <  SRR4302541.3319170/94‑1 (MQ=60)
                                  CACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTC                                                           >  SRR4302541.8301307/1‑94 (MQ=60)
                                  CACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTC                                                           <  SRR4302541.4880756/94‑1 (MQ=60)
                                  CACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTC                                                           <  SRR4302541.4355461/94‑1 (MQ=60)
                                  CACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTC                                                           >  SRR4302541.2867721/1‑94 (MQ=60)
                                  CACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTC                                                           <  SRR4302541.2684671/94‑1 (MQ=60)
                                  CACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTC                                                           >  SRR4302541.2440174/1‑94 (MQ=60)
                                   CCCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                          <  SRR4302541.4060950/94‑1 (MQ=60)
                                   ACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                          >  SRR4302541.1084996/1‑94 (MQ=60)
                                   ACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                          <  SRR4302541.5887345/94‑1 (MQ=60)
                                   ACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                          >  SRR4302541.7190090/1‑94 (MQ=60)
                                   ACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                          >  SRR4302541.7190091/1‑94 (MQ=60)
                                   ACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                          >  SRR4302541.209142/1‑94 (MQ=60)
                                   ACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                          >  SRR4302541.8843155/1‑94 (MQ=60)
                                    CCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCTCGCTAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAG                                                         <  SRR4302541.1339731/94‑1 (MQ=60)
                                    CCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAG                                                         >  SRR4302541.3635948/1‑94 (MQ=60)
                                    CCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAG                                                         <  SRR4302541.8518477/94‑1 (MQ=60)
                                     CGAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                        <  SRR4302541.8735497/94‑1 (MQ=60)
                                     CCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                        >  SRR4302541.6269860/1‑94 (MQ=60)
                                     CCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                        <  SRR4302541.3733208/94‑1 (MQ=60)
                                     CCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                        >  SRR4302541.6045818/1‑94 (MQ=60)
                                     CCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                        >  SRR4302541.8246267/1‑94 (MQ=60)
                                     CCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                        >  SRR4302541.7280706/1‑94 (MQ=60)
                                      CAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCG                                                       >  SRR4302541.5048279/1‑94 (MQ=60)
                                       AGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGA                                                      >  SRR4302541.7850603/1‑94 (MQ=60)
                                          TTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACT                                                   <  SRR4302541.6195475/94‑1 (MQ=60)
                                          TTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACT                                                   >  SRR4302541.329630/1‑94 (MQ=60)
                                          TTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACT                                                   >  SRR4302541.3382934/1‑94 (MQ=60)
                                          TTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACT                                                   <  SRR4302541.3818320/94‑1 (MQ=60)
                                            CTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGG                                                 <  SRR4302541.4638851/94‑1 (MQ=60)
                                             TCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGA                                                <  SRR4302541.7148197/94‑1 (MQ=60)
                                             TCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGA                                                <  SRR4302541.5480817/94‑1 (MQ=60)
                                              CCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGAC                                               <  SRR4302541.4644665/94‑1 (MQ=60)
                                              CCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGAC                                               <  SRR4302541.6506874/94‑1 (MQ=60)
                                              CCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGAC                                               <  SRR4302541.5308780/94‑1 (MQ=60)
                                               CAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACG                                              <  SRR4302541.2963819/94‑1 (MQ=60)
                                               CAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACG                                              >  SRR4302541.2238328/1‑94 (MQ=60)
                                                 GCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGT                                            <  SRR4302541.6004719/94‑1 (MQ=60)
                                                   GCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCT                                          <  SRR4302541.2433390/94‑1 (MQ=60)
                                                    CACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTG                                         >  SRR4302541.3341496/1‑94 (MQ=60)
                                                    CACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTG                                         <  SRR4302541.83189/94‑1 (MQ=60)
                                                     CCCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGT                                        <  SRR4302541.6094451/94‑1 (MQ=60)
                                                     ACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGT                                        >  SRR4302541.2969718/1‑94 (MQ=60)
                                                      CCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTT                                       <  SRR4302541.6528400/94‑1 (MQ=60)
                                                       CACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTT                                      >  SRR4302541.48146/1‑94 (MQ=60)
                                                       CACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTT                                      <  SRR4302541.1063826/94‑1 (MQ=60)
                                                       CACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTT                                      >  SRR4302541.1753697/1‑94 (MQ=60)
                                                       CACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTATGTTT                                      >  SRR4302541.1979614/1‑94 (MQ=60)
                                                        CCGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTC                                     <  SRR4302541.4584889/94‑1 (MQ=60)
                                                        ACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTC                                     <  SRR4302541.5314777/94‑1 (MQ=60)
                                                        ACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTC                                     >  SRR4302541.5099334/1‑94 (MQ=60)
                                                        ACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTC                                     >  SRR4302541.4517016/1‑94 (MQ=60)
                                                          GCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAA                                   <  SRR4302541.6394689/94‑1 (MQ=60)
                                                           CGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAAC                                  <  SRR4302541.1974578/94‑1 (MQ=60)
                                                            GACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACA                                 <  SRR4302541.7520378/94‑1 (MQ=60)
                                                            GACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACA                                 >  SRR4302541.3204524/1‑94 (MQ=60)
                                                            GACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACA                                 >  SRR4302541.5592076/1‑94 (MQ=60)
                                                            GACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACA                                 <  SRR4302541.3548300/94‑1 (MQ=60)
                                                              CGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGG                               <  SRR4302541.1551493/94‑1 (MQ=60)
                                                              CGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGG                               <  SRR4302541.4670649/94‑1 (MQ=60)
                                                              CGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGG                               <  SRR4302541.5689893/94‑1 (MQ=60)
                                                              CGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGG                               <  SRR4302541.4072257/94‑1 (MQ=60)
                                                               GGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGA                              <  SRR4302541.6811018/94‑1 (MQ=60)
                                                               GGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGGTTCAACAGGA                              >  SRR4302541.5311117/1‑94 (MQ=60)
                                                                GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTGAACAGGAT                             <  SRR4302541.6491097/94‑1 (MQ=60)
                                                                GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAT                             <  SRR4302541.3136325/94‑1 (MQ=60)
                                                                GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAT                             <  SRR4302541.831825/94‑1 (MQ=60)
                                                                GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAT                             <  SRR4302541.3907421/94‑1 (MQ=60)
                                                                GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGCGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAT                             >  SRR4302541.4544705/1‑94 (MQ=60)
                                                                 GTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATG                            >  SRR4302541.4527532/1‑94 (MQ=60)
                                                                 GTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATG                            >  SRR4302541.5023842/1‑94 (MQ=60)
                                                                 GTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATG                            >  SRR4302541.3120840/1‑94 (MQ=60)
                                                                     AACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCAC                        >  SRR4302541.7663239/1‑94 (MQ=60)
                                                                      ACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACC                       <  SRR4302541.6439370/94‑1 (MQ=60)
                                                                       CTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCA                      >  SRR4302541.8296832/1‑94 (MQ=60)
                                                                        TCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAG                     <  SRR4302541.4898836/94‑1 (MQ=60)
                                                                         CACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGT                    <  SRR4302541.4758547/94‑1 (MQ=60)
                                                                         CACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGT                    <  SRR4302541.5158269/94‑1 (MQ=60)
                                                                         CACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGT                    <  SRR4302541.8704696/94‑1 (MQ=60)
                                                                         CACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGT                    >  SRR4302541.8812109/1‑94 (MQ=60)
                                                                         CACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGT                    <  SRR4302541.6066315/94‑1 (MQ=60)
                                                                          ACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTA                   <  SRR4302541.1140692/94‑1 (MQ=60)
                                                                          ACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTA                   >  SRR4302541.819438/1‑94 (MQ=60)
                                                                            GCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATC                 >  SRR4302541.3295852/1‑94 (MQ=60)
                                                                             CCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCA                <  SRR4302541.4744320/94‑1 (MQ=60)
                                                                             CCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCA                >  SRR4302541.6000074/1‑94 (MQ=60)
                                                                             CCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTGCAACAGGATGCCACCAGTATCA                <  SRR4302541.5457844/94‑1 (MQ=60)
                                                                              CAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAG               >  SRR4302541.2311892/1‑94 (MQ=60)
                                                                              CAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAG               >  SRR4302541.64354/1‑94 (MQ=60)
                                                                              CAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAG               <  SRR4302541.7439113/94‑1 (MQ=60)
                                                                               AGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGC              <  SRR4302541.2479392/94‑1 (MQ=60)
                                                                               AGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGC              >  SRR4302541.3864256/1‑94 (MQ=60)
                                                                                GAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCG             <  SRR4302541.5649235/94‑1 (MQ=60)
                                                                                GAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCG             >  SRR4302541.6353935/1‑94 (MQ=60)
                                                                                GAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCG             <  SRR4302541.3191703/94‑1 (MQ=60)
                                                                                 AAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGG            <  SRR4302541.4654785/94‑1 (MQ=60)
                                                                                 AAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGG            >  SRR4302541.136106/1‑94 (MQ=60)
                                                                                  AGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGT           <  SRR4302541.523840/94‑1 (MQ=60)
                                                                                   GGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTA          >  SRR4302541.8793447/1‑94 (MQ=60)
                                                                                     CATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAA        >  SRR4302541.8106858/1‑94 (MQ=60)
                                                                                     CATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGACTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAA        >  SRR4302541.2284709/1‑94 (MQ=60)
                                                                                      ATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAT       <  SRR4302541.7668873/94‑1 (MQ=60)
                                                                                      ATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAT       <  SRR4302541.7276004/94‑1 (MQ=60)
                                                                                       TGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATT      <  SRR4302541.1737177/94‑1 (MQ=60)
                                                                                       TGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATT      >  SRR4302541.4059785/1‑94 (MQ=60)
                                                                                       TGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATT      <  SRR4302541.4611445/94‑1 (MQ=60)
                                                                                         ACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTAC    >  SRR4302541.4142939/1‑94 (MQ=60)
                                                                                         ACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGAATGCCACCAGTATCAGCGGTAAATTAC    >  SRR4302541.5477846/1‑94 (MQ=60)
                                                                                          CCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACG   <  SRR4302541.5684854/94‑1 (MQ=60)
                                                                                          CCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACG   >  SRR4302541.5894513/1‑94 (MQ=60)
                                                                                          CCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACG   <  SRR4302541.7645393/94‑1 (MQ=60)
                                                                                           CCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC  >  SRR4302541.5864723/1‑94 (MQ=60)
                                                                                           CCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC  >  SRR4302541.861698/1‑94 (MQ=60)
                                                                                           CCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC  >  SRR4302541.7317994/1‑94 (MQ=60)
                                                                                            |                                                                                            
CGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC  >  NC_000913/3670144‑3670328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑