Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,670,236 T→C Y89H (TAT→CAT)  yhjC → putative transcriptional regulator LYSR‑type

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,670,2360TC100.0% 894.8 / NA 253Y89H (TAT→CAT) yhjCputative transcriptional regulator LYSR‑type
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (111/142);  total (111/142)

Only 100 of 263 total aligned reads displayed.

CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTA  >  NC_000913/3670146‑3670325
                                                                                          |                                                                                         
cgcCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCcat                                                                                         <  2:2405603/93‑1 (MQ=255)
  ccAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCcatta                                                                                       >  2:2888370/1‑93 (MQ=255)
  ccAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCcatta                                                                                       >  1:1426744/1‑93 (MQ=255)
     gATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCa                                                                                    >  1:101901/1‑93 (MQ=255)
      aTACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCaa                                                                                   >  2:3696208/1‑93 (MQ=255)
         cAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGa                                                                                <  1:234205/93‑1 (MQ=255)
          aGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAg                                                                               <  1:6215792/93‑1 (MQ=255)
           ggCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGc                                                                              >  1:1722012/1‑93 (MQ=255)
           ggCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGc                                                                              >  2:4048479/1‑93 (MQ=255)
           ggCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGc                                                                              <  1:5372604/93‑1 (MQ=255)
           ggCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAAAGAGc                                                                              >  1:4466707/1‑93 (MQ=255)
           ggCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACACATTATCAACGAGc                                                                              >  2:5182867/1‑93 (MQ=255)
            gCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCa                                                                             <  1:5853102/93‑1 (MQ=255)
            gCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCa                                                                             >  1:4663084/1‑93 (MQ=255)
            gCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCa                                                                             <  2:3604890/93‑1 (MQ=255)
            gCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCa                                                                             <  1:2704211/93‑1 (MQ=255)
                  gAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAt                                                                       <  1:5532585/93‑1 (MQ=255)
                  gAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAt                                                                       >  2:3749168/1‑93 (MQ=255)
                  gAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAt                                                                       <  1:401396/93‑1 (MQ=255)
                   aaCATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtg                                                                      <  2:4655684/93‑1 (MQ=255)
                   aaCATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtg                                                                      <  1:3761086/93‑1 (MQ=255)
                   aaCATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtg                                                                      >  2:6407360/1‑93 (MQ=255)
                    aCATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCTACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtgt                                                                     <  2:2754840/93‑1 (MQ=255)
                    aCATCAACTTGCCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCGGAAGGCATGCCCCATTATCAACGAGCAAAAGAtgt                                                                     <  1:3317654/93‑1 (MQ=255)
                     cATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAtgtg                                                                    >  1:1313093/1‑93 (MQ=255)
                      aTCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATgtgt                                                                   <  1:613514/93‑1 (MQ=255)
                      aTCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATgtgt                                                                   <  2:168026/93‑1 (MQ=255)
                      aTCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATgtgt                                                                   <  2:2100297/93‑1 (MQ=255)
                      aTCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATgtgt                                                                   <  2:2026504/93‑1 (MQ=255)
                       tCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGtt                                                                  <  1:694026/93‑1 (MQ=255)
                       tCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGtt                                                                  <  2:4443897/93‑1 (MQ=255)
                       tCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGtt                                                                  <  2:4902604/93‑1 (MQ=255)
                       tCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGtt                                                                  >  2:5144470/1‑93 (MQ=255)
                        cAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTg                                                                 >  1:4924344/1‑93 (MQ=255)
                         aaCTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGa                                                                <  1:4129364/93‑1 (MQ=255)
                          aCTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAg                                                               >  1:3210053/1‑93 (MQ=255)
                             tGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTaa                                                            >  1:1377003/1‑93 (MQ=255)
                              ggCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAt                                                           >  1:840998/1‑93 (MQ=255)
                               gCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAtc                                                          >  2:4259589/1‑93 (MQ=255)
                                cACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAtct                                                         <  2:1138220/93‑1 (MQ=255)
                                 aCCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAtctc                                                        >  1:3909363/1‑93 (MQ=255)
                                  cccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCa                                                       <  2:2815213/93‑1 (MQ=255)
                                  cccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCa                                                       <  2:6341677/93‑1 (MQ=255)
                                   ccAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAg                                                      <  2:5522167/93‑1 (MQ=255)
                                    cAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGc                                                     >  2:4822918/1‑93 (MQ=255)
                                     aGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCg                                                    <  2:4190178/93‑1 (MQ=255)
                                     aGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCg                                                    >  2:2222898/1‑93 (MQ=255)
                                        ttCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAAc                                                 <  1:2945477/93‑1 (MQ=255)
                                         tctcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACt                                                <  1:758367/93‑1 (MQ=255)
                                          ctcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTg                                               <  2:229784/93‑1 (MQ=255)
                                           tcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTgg                                              >  1:1817461/1‑93 (MQ=255)
                                           tcCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTgg                                              <  2:6134376/93‑1 (MQ=255)
                                            ccAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGa                                             <  1:6440988/93‑1 (MQ=255)
                                            ccAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGa                                             <  1:2734776/93‑1 (MQ=255)
                                             cAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGAc                                            <  1:114600/93‑1 (MQ=255)
                                              aGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACg                                           >  2:262568/1‑93 (MQ=255)
                                               gcgcACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACgg                                          <  2:2174079/93‑1 (MQ=255)
                                                cgcACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGt                                         <  2:1610057/93‑1 (MQ=255)
                                                cgcACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGt                                         <  2:5090178/93‑1 (MQ=255)
                                                 gcACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTc                                        <  2:3147325/93‑1 (MQ=255)
                                                 gcACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTc                                        <  1:528100/93‑1 (MQ=255)
                                                  caccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCt                                       <  2:4064150/93‑1 (MQ=255)
                                                  caccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCt                                       <  1:4872659/93‑1 (MQ=255)
                                                    ccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGt                                     <  1:3722997/93‑1 (MQ=255)
                                                    ccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGt                                     <  2:2694747/93‑1 (MQ=255)
                                                    ccacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGt                                     <  2:306865/93‑1 (MQ=255)
                                                     cacGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGtt                                    <  2:1021344/93‑1 (MQ=255)
                                                      acGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGttt                                   <  1:5409007/93‑1 (MQ=255)
                                                          gACGGGTCAAACTCACGCCGGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTTNTTANAc                               >  2:1371260/1‑93 (MQ=255)
                                                          gACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAAc                               <  1:5098824/93‑1 (MQ=255)
                                                          gACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAAc                               >  2:329935/1‑93 (MQ=255)
                                                            cGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAg                             >  1:4816653/1‑93 (MQ=255)
                                                              ggTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGa                           <  1:3479639/93‑1 (MQ=255)
                                                              ggTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGa                           <  1:5508920/93‑1 (MQ=255)
                                                               gTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAt                          >  1:4367629/1‑93 (MQ=255)
                                                                tCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATg                         <  1:3598757/93‑1 (MQ=255)
                                                                 cAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGc                        >  1:2969926/1‑93 (MQ=255)
                                                                 cAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGc                        <  1:3113691/93‑1 (MQ=255)
                                                                 cAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGc                        <  2:5925276/93‑1 (MQ=255)
                                                                  aaaCTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGcc                       <  2:3350007/93‑1 (MQ=255)
                                                                  aaaCTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGcc                       >  1:4547526/1‑93 (MQ=255)
                                                                    aCTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGccac                     <  2:412524/93‑1 (MQ=255)
                                                                        aCGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGt                 <  2:1883473/93‑1 (MQ=255)
                                                                        aCGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGt                 >  1:3997841/1‑93 (MQ=255)
                                                                        aCGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGt                 >  2:1445779/1‑93 (MQ=255)
                                                                         cGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTa                <  1:2870994/93‑1 (MQ=255)
                                                                              gAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGTGCTGTTTCAACAGGATGCCACCAGTATGAGc           >  1:2247781/1‑93 (MQ=255)
                                                                              gAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGc           <  2:3937630/93‑1 (MQ=255)
                                                                              gAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGc           <  1:4781625/93‑1 (MQ=255)
                                                                               aaGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCg          >  1:4214981/1‑93 (MQ=255)
                                                                               aaGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCg          >  2:5418044/1‑93 (MQ=255)
                                                                                aGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCgg         >  1:2633881/1‑93 (MQ=255)
                                                                                  gCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTa       <  1:5655042/93‑1 (MQ=255)
                                                                                   cATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTaa      <  2:6418986/93‑1 (MQ=255)
                                                                                     tGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAt    >  2:1500816/1‑93 (MQ=255)
                                                                                     tGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAt    >  2:5680830/1‑93 (MQ=255)
                                                                                     tGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAt    >  1:5917185/1‑93 (MQ=255)
                                                                                     tGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAt    <  2:833009/93‑1 (MQ=255)
                                                                                      gACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAtt   <  1:1971984/93‑1 (MQ=255)
                                                                                       aCCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTa  <  2:452192/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTA  >  NC_000913/3670146‑3670325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCA  >  NC_000913/3670143‑3670329
                                                                                             |                                                                                             
TCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCCTGACCC                                                                                               >  SRR4302534.17818/1‑94 (MQ=60)
TCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCC                                                                                               <  SRR4302534.1473037/94‑1 (MQ=60)
 CGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCA                                                                                              >  SRR4302534.2597867/1‑94 (MQ=60)
 CGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCA                                                                                              <  SRR4302534.245653/94‑1 (MQ=60)
   CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATT                                                                                            >  SRR4302534.2792551/1‑94 (MQ=60)
   CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATT                                                                                            <  SRR4302534.1428235/94‑1 (MQ=60)
   CGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATT                                                                                            >  SRR4302534.4370740/1‑94 (MQ=60)
    GCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTA                                                                                           >  SRR4302534.1464268/1‑94 (MQ=60)
      CAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATC                                                                                         <  SRR4302534.3339703/94‑1 (MQ=60)
       AGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCA                                                                                        >  SRR4302534.104618/1‑94 (MQ=60)
        GATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAA                                                                                       >  SRR4302534.1456086/1‑94 (MQ=60)
         ATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAAC                                                                                      <  SRR4302534.4988963/94‑1 (MQ=60)
          TACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACG                                                                                     >  SRR4302534.1087540/1‑94 (MQ=60)
          TACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACG                                                                                     <  SRR4302534.2739605/94‑1 (MQ=60)
          TACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACG                                                                                     <  SRR4302534.3737075/94‑1 (MQ=60)
            CAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAG                                                                                   <  SRR4302534.4764067/94‑1 (MQ=60)
            CAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAG                                                                                   >  SRR4302534.461758/1‑94 (MQ=60)
            CAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAG                                                                                   <  SRR4302534.240339/94‑1 (MQ=60)
             AGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGC                                                                                  <  SRR4302534.6384676/94‑1 (MQ=60)
             AGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGC                                                                                  >  SRR4302534.202293/1‑94 (MQ=60)
             AGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGC                                                                                  >  SRR4302534.1766754/1‑94 (MQ=60)
             AGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGC                                                                                  >  SRR4302534.3884088/1‑94 (MQ=60)
             AGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAAAGAGC                                                                                  >  SRR4302534.4587494/1‑94 (MQ=60)
              GGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCA                                                                                 <  SRR4302534.803056/94‑1 (MQ=60)
              GGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCA                                                                                 >  SRR4302534.4789690/1‑94 (MQ=60)
              GGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCA                                                                                 <  SRR4302534.5517370/94‑1 (MQ=60)
              GGCACTGCAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGCCGGGTCAAACTCACGCTAGAAGGCATGACCCATTATCAACGAGCA                                                                                 <  SRR4302534.5978321/94‑1 (MQ=60)
               GCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAA                                                                                <  SRR4302534.2775632/94‑1 (MQ=60)
               GCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAA                                                                                <  SRR4302534.6012022/94‑1 (MQ=60)
               GCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAA                                                                                <  SRR4302534.1348030/94‑1 (MQ=60)
               GCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAA                                                                                <  SRR4302534.4578725/94‑1 (MQ=60)
                   TGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGA                                                                            >  SRR4302534.368124/1‑94 (MQ=60)
                   TGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGA                                                                            >  SRR4302534.5411039/1‑94 (MQ=60)
                    GGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAT                                                                           <  SRR4302534.4912226/94‑1 (MQ=60)
                    GGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGAT                                                                           >  SRR4302534.5031810/1‑94 (MQ=60)
                     GAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATG                                                                          <  SRR4302534.411661/94‑1 (MQ=60)
                     GAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATG                                                                          <  SRR4302534.5681910/94‑1 (MQ=60)
                      AACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGT                                                                         >  SRR4302534.45685/1‑94 (MQ=60)
                      AACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGT                                                                         <  SRR4302534.3862070/94‑1 (MQ=60)
                      AACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGT                                                                         <  SRR4302534.2926383/94‑1 (MQ=60)
                       ACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTG                                                                        >  SRR4302534.1347719/1‑94 (MQ=60)
                       ACATCAACTTGCCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCGGAAGGCATGCCCCATTATCAACGAGCAAAAGATGTC                                                                        <  SRR4302534.3406338/94‑1 (MQ=60)
                        CATCAACTTGGCACCCAGCTTCTCCGGCGCACCACGCGACGGGTCAAAATCACGCCAGAAGGCATGAGCCATTATCAACGAGCAAGAGATGTGT                                                                       >  SRR4302534.5056085/1‑94 (MQ=60)
                        CATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGT                                                                       <  SRR4302534.6369364/94‑1 (MQ=60)
                        CATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGT                                                                       >  SRR4302534.5459599/1‑94 (MQ=60)
                         ATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTT                                                                      <  SRR4302534.628415/94‑1 (MQ=60)
                          TCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                     <  SRR4302534.711022/94‑1 (MQ=60)
                          TCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTG                                                                     >  SRR4302534.5057798/1‑94 (MQ=60)
                           CAACTTGGCCCCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGA                                                                    <  SRR4302534.5927767/94‑1 (MQ=60)
                            AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                   <  SRR4302534.3038276/94‑1 (MQ=60)
                            AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                   >  SRR4302534.3295230/1‑94 (MQ=60)
                            AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                   <  SRR4302534.41773/94‑1 (MQ=60)
                            AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                   <  SRR4302534.4240610/94‑1 (MQ=60)
                            AACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAG                                                                   >  SRR4302534.5547148/1‑94 (MQ=60)
                             ACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGT                                                                  <  SRR4302534.2380066/94‑1 (MQ=60)
                             ACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGT                                                                  <  SRR4302534.5623358/94‑1 (MQ=60)
                              CTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTA                                                                 <  SRR4302534.4960156/94‑1 (MQ=60)
                              CTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTA                                                                 <  SRR4302534.4870359/94‑1 (MQ=60)
                               TTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAA                                                                >  SRR4302534.1413284/1‑94 (MQ=60)
                                TGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAT                                                               >  SRR4302534.862183/1‑94 (MQ=60)
                                TGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAAT                                                               >  SRR4302534.2833136/1‑94 (MQ=60)
                                   CACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTC                                                            >  SRR4302534.4014194/1‑94 (MQ=60)
                                    ACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCA                                                           >  SRR4302534.6036752/1‑94 (MQ=60)
                                     CCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAG                                                          <  SRR4302534.4064671/94‑1 (MQ=60)
                                      CCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                         <  SRR4302534.3657845/94‑1 (MQ=60)
                                      CCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGC                                                         <  SRR4302534.4139732/94‑1 (MQ=60)
                                        AGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCATCGA                                                       <  SRR4302534.6456576/94‑1 (MQ=60)
                                        AGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGA                                                       >  SRR4302534.5961891/1‑94 (MQ=60)
                                          CTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAAC                                                     >  SRR4302534.5693082/1‑94 (MQ=60)
                                           TTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACT                                                    >  SRR4302534.2700855/1‑94 (MQ=60)
                                           TTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACT                                                    >  SRR4302534.336702/1‑94 (MQ=60)
                                           TTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACT                                                    <  SRR4302534.3022774/94‑1 (MQ=60)
                                            TCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTG                                                   <  SRR4302534.777178/94‑1 (MQ=60)
                                             CTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGG                                                  <  SRR4302534.5805366/94‑1 (MQ=60)
                                             CTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGG                                                  >  SRR4302534.1864685/1‑94 (MQ=60)
                                              TCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGA                                                 <  SRR4302534.2996467/94‑1 (MQ=60)
                                              TCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGA                                                 >  SRR4302534.2422334/1‑94 (MQ=60)
                                               CCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGAC                                                <  SRR4302534.6614569/94‑1 (MQ=60)
                                               CCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGAC                                                <  SRR4302534.2806874/94‑1 (MQ=60)
                                                CAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACG                                               <  SRR4302534.117655/94‑1 (MQ=60)
                                                CAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACG                                               <  SRR4302534.5360052/94‑1 (MQ=60)
                                                 AGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGG                                              >  SRR4302534.425912/1‑94 (MQ=60)
                                                  GCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGT                                             <  SRR4302534.6516395/94‑1 (MQ=60)
                                                   CGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTC                                            >  SRR4302534.6299554/1‑94 (MQ=60)
                                                    GCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCT                                           <  SRR4302534.541205/94‑1 (MQ=60)
                                                    GCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCT                                           <  SRR4302534.4707140/94‑1 (MQ=60)
                                                     CACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTG                                          >  SRR4302534.6629260/1‑94 (MQ=60)
                                                     CACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTG                                          <  SRR4302534.5004811/94‑1 (MQ=60)
                                                     CACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTG                                          <  SRR4302534.488986/94‑1 (MQ=60)
                                                       CCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTT                                        <  SRR4302534.3823067/94‑1 (MQ=60)
                                                       CCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTT                                        <  SRR4302534.1178428/94‑1 (MQ=60)
                                                        CACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTT                                       >  SRR4302534.5676476/1‑94 (MQ=60)
                                                         ACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTC                                      <  SRR4302534.5554539/94‑1 (MQ=60)
                                                           GCGACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAA                                    >  SRR4302534.2795074/1‑94 (MQ=60)
                                                             GACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACA                                  <  SRR4302534.5236449/94‑1 (MQ=60)
                                                             GACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACA                                  <  SRR4302534.4108723/94‑1 (MQ=60)
                                                              ACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAG                                 >  SRR4302534.4947395/1‑94 (MQ=60)
                                                              ACGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAG                                 >  SRR4302534.2255543/1‑94 (MQ=60)
                                                               CGGGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGG                                <  SRR4302534.5063711/94‑1 (MQ=60)
                                                                 GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAT                              <  SRR4302534.3573168/94‑1 (MQ=60)
                                                                 GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAT                              <  SRR4302534.5657526/94‑1 (MQ=60)
                                                                 GGTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGAT                              >  SRR4302534.4485344/1‑94 (MQ=60)
                                                                  GTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATG                             <  SRR4302534.81472/94‑1 (MQ=60)
                                                                  GTCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATG                             >  SRR4302534.5608851/1‑94 (MQ=60)
                                                                   TCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGC                            >  SRR4302534.3047695/1‑94 (MQ=60)
                                                                   TCAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGC                            <  SRR4302534.3695538/94‑1 (MQ=60)
                                                                    CAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCC                           <  SRR4302534.3195580/94‑1 (MQ=60)
                                                                    CAAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCC                           >  SRR4302534.4670809/1‑94 (MQ=60)
                                                                     AAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCA                          <  SRR4302534.6639757/94‑1 (MQ=60)
                                                                     AAACTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCA                          <  SRR4302534.3137394/94‑1 (MQ=60)
                                                                        CTCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCA                       <  SRR4302534.1320624/94‑1 (MQ=60)
                                                                         TCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAG                      >  SRR4302534.6195423/1‑94 (MQ=60)
                                                                         TCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAG                      <  SRR4302534.948392/94‑1 (MQ=60)
                                                                         TCACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAG                      <  SRR4302534.4298051/94‑1 (MQ=60)
                                                                          CACGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGT                     >  SRR4302534.4104857/1‑94 (MQ=60)
                                                                            CGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTAT                   <  SRR4302534.2946381/94‑1 (MQ=60)
                                                                            CGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTAT                   >  SRR4302534.1659050/1‑94 (MQ=60)
                                                                            CGCCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTAT                   >  SRR4302534.3033730/1‑94 (MQ=60)
                                                                              CCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCA                 <  SRR4302534.3849595/94‑1 (MQ=60)
                                                                              CCAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCA                 >  SRR4302534.187382/1‑94 (MQ=60)
                                                                               CAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCACCAGGATGCCACCACTATCAG                >  SRR4302534.1844689/1‑94 (MQ=60)
                                                                               CAGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAG                >  SRR4302534.308126/1‑94 (MQ=60)
                                                                                AGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGTGCTGTTTCAACAGGATGCCACCAGTATGAGC               >  SRR4302534.2307358/1‑94 (MQ=60)
                                                                                AGAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGC               >  SRR4302534.732571/1‑94 (MQ=60)
                                                                                 GAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCG              <  SRR4302534.5548723/94‑1 (MQ=60)
                                                                                 GAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCG              >  SRR4302534.4328664/1‑94 (MQ=60)
                                                                                 GAAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCG              <  SRR4302534.4911457/94‑1 (MQ=60)
                                                                                  AAGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGG             >  SRR4302534.2703580/1‑94 (MQ=60)
                                                                                   AGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGT            <  SRR4302534.3222430/94‑1 (MQ=60)
                                                                                   AGGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGT            <  SRR4302534.1550435/94‑1 (MQ=60)
                                                                                    GGCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTA           >  SRR4302534.3471302/1‑94 (MQ=60)
                                                                                     GCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAA          >  SRR4302534.406682/1‑94 (MQ=60)
                                                                                     GCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAA          >  SRR4302534.2201898/1‑94 (MQ=60)
                                                                                     GCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAA          <  SRR4302534.5808137/94‑1 (MQ=60)
                                                                                     GCATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAA          <  SRR4302534.3767310/94‑1 (MQ=60)
                                                                                       ATGACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAT        >  SRR4302534.6077859/1‑94 (MQ=60)
                                                                                         GACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTGTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTA      <  SRR4302534.3992873/94‑1 (MQ=60)
                                                                                         GACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTA      <  SRR4302534.5017405/94‑1 (MQ=60)
                                                                                         GACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTA      <  SRR4302534.87679/94‑1 (MQ=60)
                                                                                         GACCCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTA      <  SRR4302534.2023606/94‑1 (MQ=60)
                                                                                            CCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC   >  SRR4302534.5608139/1‑94 (MQ=60)
                                                                                            CCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC   >  SRR4302534.4602683/1‑94 (MQ=60)
                                                                                            CCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGC   >  SRR4302534.179286/1‑94 (MQ=60)
                                                                                            CCATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGCTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAAATACGC   >  SRR4302534.2490533/1‑94 (MQ=60)
                                                                                             CATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCA  >  SRR4302534.2261370/1‑94 (MQ=60)
                                                                                             CATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCA  <  SRR4302534.4057638/94‑1 (MQ=60)
                                                                                             |                                                                                             
TCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTCAAACTCACGCCAGAAGGCATGACCTATTATCAACGAGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTTTCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCA  >  NC_000913/3670143‑3670329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑