Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,066,222	T→C	Y212C (TAC→TGC)	yihQ ←	putative glycosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,066,222	0	T	C	100.0%	959.9 / NA	274	Y212C (TAC→TGC)	yihQ	putative glycosidase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/143); total (131/143)

Only 100 of 280 total aligned reads displayed.

AGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGG  >  NC_000913/4066132‑4066311

agGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAt                                                                                         >  1:5662120/1‑93 (MQ=255)

agGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAt                                                                                         >  1:1600324/1‑93 (MQ=255)

agGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTCCATGGCAt                                                                                         >  1:7475378/1‑93 (MQ=255)

  ggCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTc                                                                                       >  1:3953309/1‑93 (MQ=255)

   gCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTcc                                                                                      >  1:8022952/1‑93 (MQ=255)

   gCGGTTAATTTTTCCAGCAGGGAAATGAATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTcc                                                                                      >  1:2626478/1‑93 (MQ=255)

    cGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCg                                                                                     >  1:1944368/1‑93 (MQ=255)

     ggTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCgg                                                                                    <  2:104449/93‑1 (MQ=255)

     ggTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCgg                                                                                    >  1:6320742/1‑93 (MQ=255)

     ggTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCgg                                                                                    >  2:6797992/1‑93 (MQ=255)

     ggTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCgg                                                                                    >  2:5254235/1‑93 (MQ=255)

      gTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCggg                                                                                   <  1:1422822/93‑1 (MQ=255)

        tAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGc                                                                                 <  2:3280001/93‑1 (MQ=255)

        tAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGc                                                                                 >  2:4010782/1‑93 (MQ=255)

           tttttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACt                                                                              >  2:2237309/1‑93 (MQ=255)

            ttttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTa                                                                             >  2:1115052/1‑93 (MQ=255)

            ttttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTa                                                                             >  1:3309945/1‑93 (MQ=255)

             tttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTaa                                                                            <  1:7380953/93‑1 (MQ=255)

              ttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTaaa                                                                           >  1:6527163/1‑93 (MQ=255)

              ttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTaaa                                                                           <  1:595246/93‑1 (MQ=255)

              ttCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTaaa                                                                           <  1:7556622/93‑1 (MQ=255)

                ccAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGt                                                                         <  1:5178482/93‑1 (MQ=255)

                 cagcagGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTc                                                                        <  1:1717969/93‑1 (MQ=255)

                   gcagGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGa                                                                      >  1:4900079/1‑93 (MQ=255)

                    cagGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGaa                                                                     >  2:8086471/1‑93 (MQ=255)

                     agGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAg                                                                    >  2:4376639/1‑93 (MQ=255)

                      gggAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGt                                                                   <  1:1100283/93‑1 (MQ=255)

                      gggAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGt                                                                   >  2:7921922/1‑93 (MQ=255)

                      gggAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGt                                                                   <  2:2815836/93‑1 (MQ=255)

                      gggAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGt                                                                   >  2:2515014/1‑93 (MQ=255)

                      gggAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGt                                                                   >  1:1459908/1‑93 (MQ=255)

                      gggAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGt                                                                   <  2:8307501/93‑1 (MQ=255)

                          aaTGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCat                                                               <  1:2744381/93‑1 (MQ=255)

                          aaTGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCat                                                               <  2:2109098/93‑1 (MQ=255)

                           atgtatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCata                                                              <  1:2979549/93‑1 (MQ=255)

                            tgtatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCatat                                                             >  2:4020992/1‑93 (MQ=255)

                            agtatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCatat                                                             <  2:1305277/92‑1 (MQ=255)

                             gtatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCAtata                                                            <  2:6478005/93‑1 (MQ=255)

                              tatgtGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAg                                                           >  1:6852888/1‑93 (MQ=255)

                                tgtgTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCa                                                         <  2:7155222/93‑1 (MQ=255)

                                tgtgTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCa                                                         >  2:3713291/1‑93 (MQ=255)

                                tgtgTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCa                                                         <  1:3727334/93‑1 (MQ=255)

                                 gtgtCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCaa                                                        >  2:8658421/1‑93 (MQ=255)

                                  tgtCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAAc                                                       >  2:6921927/1‑93 (MQ=255)

                                  tgtCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAAc                                                       <  1:5340378/93‑1 (MQ=255)

                                    tCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTg                                                     <  2:1849776/93‑1 (MQ=255)

                                    tCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTg                                                     >  2:8233424/1‑93 (MQ=255)

                                      aGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGtt                                                   <  2:7519683/93‑1 (MQ=255)

                                      aGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGtt                                                   >  2:2400385/1‑93 (MQ=255)

                                      aGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGtt                                                   <  2:6514261/93‑1 (MQ=255)

                                      aGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGtt                                                   >  1:497313/1‑93 (MQ=255)

                                       gCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTa                                                  >  1:8687490/1‑93 (MQ=255)

                                       gCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTa                                                  <  2:4751038/93‑1 (MQ=255)

                                        cacaTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTAt                                                 <  1:6200069/93‑1 (MQ=255)

                                         acaTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATc                                                >  1:2083456/1‑93 (MQ=255)

                                         acaTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATc                                                <  1:6046634/93‑1 (MQ=255)

                                         acaTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATc                                                >  2:708048/1‑93 (MQ=255)

                                           aTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCaa                                              <  2:2594561/93‑1 (MQ=255)

                                           aTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCaa                                              <  2:2944683/93‑1 (MQ=255)

                                           aTTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCaa                                              >  2:5753071/1‑93 (MQ=255)

                                            ttCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAc                                             >  2:2218689/1‑93 (MQ=255)

                                            ttCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAc                                             >  1:1841478/1‑93 (MQ=255)

                                            ttCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTAGAAGTTCATATAGCAACTGTTATCAAc                                             <  1:5761232/93‑1 (MQ=255)

                                             tCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACa                                            <  2:6728476/93‑1 (MQ=255)

                                               aaaaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATg                                          >  2:1816328/1‑93 (MQ=255)

                                               aaaaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATg                                          <  2:4519228/93‑1 (MQ=255)

                                               aaaaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATg                                          >  2:6060359/1‑93 (MQ=255)

                                               aaaaCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATg                                          <  2:731318/93‑1 (MQ=255)

                                                  aCGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCa                                       <  2:7678903/93‑1 (MQ=255)

                                                      aGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTaa                                   >  2:8194372/1‑93 (MQ=255)

                                                      aGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTaa                                   <  2:5174068/93‑1 (MQ=255)

                                                         gTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATAc                                <  2:8810779/93‑1 (MQ=255)

                                                          ttGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACt                               >  1:406907/1‑93 (MQ=255)

                                                          ttGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACt                               >  2:7762828/1‑93 (MQ=255)

                                                          ttGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACt                               >  1:8405107/1‑93 (MQ=255)

                                                            gCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTc                             >  1:7644183/1‑93 (MQ=255)

                                                             cTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCt                            <  2:5016457/93‑1 (MQ=255)

                                                               ttGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGc                          <  2:5534703/93‑1 (MQ=255)

                                                                 gTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGt                        <  1:3516050/93‑1 (MQ=255)

                                                                 gTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGt                        <  1:6710653/93‑1 (MQ=255)

                                                                 gTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGt                        <  1:8769398/93‑1 (MQ=255)

                                                                 gTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGt                        <  1:7798432/93‑1 (MQ=255)

                                                                    ttCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCt                     <  1:7195282/93‑1 (MQ=255)

                                                                    ttCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCt                     >  2:704128/1‑93 (MQ=255)

                                                                       ccACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAc                  <  1:1029950/93‑1 (MQ=255)

                                                                        cacaGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACa                 >  2:8395456/1‑93 (MQ=255)

                                                                         acaGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACaa                <  2:586567/93‑1 (MQ=255)

                                                                           aGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAAAAAc              >  2:6422719/1‑93 (MQ=255)

                                                                            gcgcCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACg             <  2:1635811/93‑1 (MQ=255)

                                                                              gcCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTa           <  1:4182462/93‑1 (MQ=255)

                                                                               ccAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAg          <  1:7268912/93‑1 (MQ=255)

                                                                                 aGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGc        <  2:7458155/93‑1 (MQ=255)

                                                                                 aGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGc        >  2:4130562/1‑93 (MQ=255)

                                                                                  gTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCt       >  1:7890072/1‑93 (MQ=255)

                                                                                  gTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCt       >  2:1729802/1‑93 (MQ=255)

                                                                                    tCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCtgt     <  1:2159993/93‑1 (MQ=255)

                                                                                     cATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCtgtg    >  1:8103115/1‑93 (MQ=255)

                                                                                     cATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCtgtg    >  2:3497948/1‑93 (MQ=255)

                                                                                      aTGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTgg   <  2:2725915/93‑1 (MQ=255)

                                                                                      aTGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTgg   >  1:1302998/1‑93 (MQ=255)

AGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGG  >  NC_000913/4066132‑4066311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGAAGA  >  NC_000913/4066129‑4066315

AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGC                                                                                               <  SRR4302541.4733670/94‑1 (MQ=60)

AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGC                                                                                               >  SRR4302541.3539689/1‑94 (MQ=60)

AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGC                                                                                               >  SRR4302541.1544081/1‑94 (MQ=60)

  CAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAT                                                                                             >  SRR4302541.5719943/1‑94 (MQ=60)

  CAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCAT                                                                                             >  SRR4302541.1616251/1‑94 (MQ=60)

  CAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTCCATGGCAT                                                                                             >  SRR4302541.7555341/1‑94 (MQ=60)

   AGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATT                                                                                            >  SRR4302541.3968660/1‑94 (MQ=60)

    GGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTC                                                                                           >  SRR4302541.3992610/1‑94 (MQ=60)

     GGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCC                                                                                          >  SRR4302541.8111156/1‑94 (MQ=60)

     GGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCC                                                                                          <  SRR4302541.3388398/94‑1 (MQ=60)

     GGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCC                                                                                          <  SRR4302541.6621802/94‑1 (MQ=60)

     GGCGGTTAATTTTTCCAGCAGGGAAATGAATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCC                                                                                          >  SRR4302541.2652687/1‑94 (MQ=60)

      GCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCG                                                                                         >  SRR4302541.1963100/1‑94 (MQ=60)

      GCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCG                                                                                         <  SRR4302541.6492275/94‑1 (MQ=60)

       CGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGG                                                                                        >  SRR4302541.6385366/1‑94 (MQ=60)

         GTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGG                                                                                      <  SRR4302541.1436665/94‑1 (MQ=60)

         GTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGG                                                                                      <  SRR4302541.7314973/94‑1 (MQ=60)

          TTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGC                                                                                     <  SRR4302541.5504116/94‑1 (MQ=60)

           TAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCC                                                                                    >  SRR4302541.8144237/1‑94 (MQ=60)

           TAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCA                                                                                    >  SRR4302541.310209/1‑94 (MQ=60)

           TAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCA                                                                                    >  SRR4302541.2141622/1‑94 (MQ=60)

              TTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTA                                                                                 <  SRR4302541.1471378/94‑1 (MQ=60)

              TTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTA                                                                                 >  SRR4302541.3343181/1‑94 (MQ=60)

                TTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAA                                                                               >  SRR4302541.6593784/1‑94 (MQ=60)

                TTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAA                                                                               <  SRR4302541.7459855/94‑1 (MQ=60)

                 TTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAG                                                                              <  SRR4302541.600856/94‑1 (MQ=60)

                 TTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAG                                                                              <  SRR4302541.7637377/94‑1 (MQ=60)

                 TTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAG                                                                              >  SRR4302541.1686236/1‑94 (MQ=60)

                   CCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTC                                                                            <  SRR4302541.5231758/94‑1 (MQ=60)

                    CAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCG                                                                           <  SRR4302541.8144827/94‑1 (MQ=60)

                    CAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCG                                                                           <  SRR4302541.1734773/94‑1 (MQ=60)

                     AGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGA                                                                          >  SRR4302541.4950076/1‑94 (MQ=60)

                       CAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAG                                                                        >  SRR4302541.1613536/1‑94 (MQ=60)

                        AGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGT                                                                       >  SRR4302541.6810763/1‑94 (MQ=60)

                        AGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGT                                                                       <  SRR4302541.2741243/94‑1 (MQ=60)

                        AGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGT                                                                       <  SRR4302541.5750242/94‑1 (MQ=60)

                        AGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGT                                                                       >  SRR4302541.2014660/1‑94 (MQ=60)

                        AGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGT                                                                       >  SRR4302541.1474184/1‑94 (MQ=60)

                         GGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTT                                                                      <  SRR4302541.1814050/94‑1 (MQ=60)

                         GGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTT                                                                      <  SRR4302541.1110583/94‑1 (MQ=60)

                         GGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTT                                                                      >  SRR4302541.6023050/1‑94 (MQ=60)

                         GGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTT                                                                      <  SRR4302541.3970764/94‑1 (MQ=60)

                          GGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTC                                                                     <  SRR4302541.41560/94‑1 (MQ=60)

                          GGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTC                                                                     >  SRR4302541.1331061/1‑94 (MQ=60)

                           GAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCA                                                                    <  SRR4302541.8054150/94‑1 (MQ=60)

                             AATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATA                                                                  <  SRR4302541.2771940/94‑1 (MQ=60)

                             AATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATA                                                                  >  SRR4302541.8728620/1‑94 (MQ=60)

                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                                 >  SRR4302541.5402096/1‑94 (MQ=60)

                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                                 <  SRR4302541.1061430/94‑1 (MQ=60)

                              ATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATAT                                                                 <  SRR4302541.3009600/94‑1 (MQ=60)

                                GTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAG                                                               >  SRR4302541.6926132/1‑94 (MQ=60)

                                GTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAG                                                               <  SRR4302541.8435669/94‑1 (MQ=60)

                                GTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAG                                                               <  SRR4302541.5004952/94‑1 (MQ=60)

                                 TATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGC                                                              <  SRR4302541.8841773/94‑1 (MQ=60)

                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                             <  SRR4302541.3460807/94‑1 (MQ=60)

                                  ATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCA                                                             >  SRR4302541.407929/1‑94 (MQ=60)

                                   TGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAA                                                            <  SRR4302541.3764888/94‑1 (MQ=60)

                                     TGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACT                                                          >  SRR4302541.1780182/1‑94 (MQ=60)

                                     TGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACT                                                          <  SRR4302541.5395283/94‑1 (MQ=60)

                                       TCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGT                                                        >  SRR4302541.6874667/1‑94 (MQ=60)

                                        CAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTT                                                       >  SRR4302541.1137235/1‑94 (MQ=60)

                                        CAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTT                                                       >  SRR4302541.501998/1‑94 (MQ=60)

                                         AGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTA                                                      >  SRR4302541.8780468/1‑94 (MQ=60)

                                          GCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTAT                                                     <  SRR4302541.53511/94‑1 (MQ=60)

                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                    >  SRR4302541.8609544/1‑94 (MQ=60)

                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                    <  SRR4302541.6263421/94‑1 (MQ=60)

                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                    >  SRR4302541.2103632/1‑94 (MQ=60)

                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                    <  SRR4302541.1566758/94‑1 (MQ=60)

                                           CACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATC                                                    <  SRR4302541.7629453/94‑1 (MQ=60)

                                            ACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCA                                                   <  SRR4302541.650039/94‑1 (MQ=60)

                                            ACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCA                                                   <  SRR4302541.6108479/94‑1 (MQ=60)

                                              ATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAC                                                 >  SRR4302541.1859313/1‑94 (MQ=60)

                                              ATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAAC                                                 <  SRR4302541.7052741/94‑1 (MQ=60)

                                               TTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTAGAAGTTCATATAGCAACTGTTATCAACA                                                <  SRR4302541.5819860/94‑1 (MQ=60)

                                                TCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACAT                                               <  SRR4302541.2654482/94‑1 (MQ=60)

                                                TCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACAT                                               <  SRR4302541.8382627/94‑1 (MQ=60)

                                                 CAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATG                                              >  SRR4302541.7410027/1‑94 (MQ=60)

                                                  AAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGG                                             >  SRR4302541.7845545/1‑94 (MQ=60)

                                                     ACGCAGCGTTGCTTTGTATTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAG                                          <  SRR4302541.7898141/94‑1 (MQ=60)

                                                      CGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGT                                         >  SRR4302541.2885367/1‑94 (MQ=60)

                                                       GCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTA                                        <  SRR4302541.3023226/94‑1 (MQ=60)

                                                       GCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTA                                        >  SRR4302541.2105977/1‑94 (MQ=60)

                                                           CGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATAC                                    <  SRR4302541.621608/94‑1 (MQ=60)

                                                           CGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATAC                                    <  SRR4302541.6371516/94‑1 (MQ=60)

                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                   <  SRR4302541.7721798/94‑1 (MQ=60)

                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                   <  SRR4302541.7213235/94‑1 (MQ=60)

                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                   >  SRR4302541.8496028/1‑94 (MQ=60)

                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                   >  SRR4302541.410678/1‑94 (MQ=60)

                                                            GTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACT                                   >  SRR4302541.410679/1‑94 (MQ=60)

                                                              TGCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTC                                 >  SRR4302541.7725666/1‑94 (MQ=60)

                                                               tgttttttcttCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCT                                <  SRR4302541.761132/83‑1 (MQ=60)

                                                               gctgtggctgCCCACAGCGCCAGTTCAGGGCATTCCGTGGCACGCACGGCGAAGTTCATATAGCAACTGGTATCAACATGGCAGTAATACTTCT                                <  SRR4302541.5622738/84‑1 (MQ=46)

                                                               TCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCT                                <  SRR4302541.6359723/94‑1 (MQ=60)

                                                               TCTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCT                                <  SRR4302541.4511008/94‑1 (MQ=60)

                                                                CTTTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCTGTAATACTTCTG                               >  SRR4302541.2186507/1‑94 (MQ=60)

                                                                  TTGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCG                             <  SRR4302541.1210593/94‑1 (MQ=60)

                                                                   TGTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGT                            <  SRR4302541.7712010/94‑1 (MQ=60)

                                                                    GTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTG                           <  SRR4302541.7882285/94‑1 (MQ=60)

                                                                    GTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTG                           <  SRR4302541.8863154/94‑1 (MQ=60)

                                                                    GTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTG                           <  SRR4302541.6781805/94‑1 (MQ=60)

                                                                    GTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTG                           <  SRR4302541.3551413/94‑1 (MQ=60)

                                                                    GTCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTG                           <  SRR4302541.4201098/94‑1 (MQ=60)

                                                                     TCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGC                          >  SRR4302541.6108121/1‑94 (MQ=60)

                                                                     TCTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGC                          >  SRR4302541.1413996/1‑94 (MQ=60)

                                                                      CTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCT                         >  SRR4302541.5211834/1‑94 (MQ=60)

                                                                      CTTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCT                         >  SRR4302541.2008495/1‑94 (MQ=60)

                                                                       TTCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTG                        <  SRR4302541.7272044/94‑1 (MQ=60)

                                                                        TCCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGA                       >  SRR4302541.1470960/1‑94 (MQ=60)

                                                                         CCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAC                      >  SRR4302541.7512178/1‑94 (MQ=60)

                                                                         CCCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGAC                      >  SRR4302541.3722034/1‑94 (MQ=60)

                                                                          CCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACA                     >  SRR4302541.7409776/1‑94 (MQ=60)

                                                                          CCACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACA                     <  SRR4302541.1039458/94‑1 (MQ=60)

                                                                            ACAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAA                   >  SRR4302541.1879624/1‑94 (MQ=60)

                                                                             CAGCGCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAAC                  <  SRR4302541.5796880/94‑1 (MQ=60)

                                                                                 gcatGTTCATGGCATTCCGGGGTACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAG              <  SRR4302541.7812455/90‑1 (MQ=60)

                                                                                 GCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAG              <  SRR4302541.4223951/94‑1 (MQ=60)

                                                                                 GCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAG              >  SRR4302541.6005255/1‑94 (MQ=60)

                                                                                 GCCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAG              <  SRR4302541.1887278/94‑1 (MQ=60)

                                                                                  CCAGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGG             <  SRR4302541.7346464/94‑1 (MQ=60)

                                                                                    AGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCT           >  SRR4302541.6258327/1‑94 (MQ=60)

                                                                                    AGTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCT           >  SRR4302541.7976823/1‑94 (MQ=60)

                                                                                     GTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTG          <  SRR4302541.4654013/94‑1 (MQ=60)

                                                                                     GTTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTAACAAACGTAGGCTG          <  SRR4302541.5044757/94‑1 (MQ=60)

                                                                                      TTCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGT         <  SRR4302541.7961004/94‑1 (MQ=60)

                                                                                       TCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTG        >  SRR4302541.8191932/1‑94 (MQ=60)

                                                                                       TCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTG        <  SRR4302541.2180885/94‑1 (MQ=60)

                                                                                       TCATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTG        >  SRR4302541.5354742/1‑94 (MQ=60)

                                                                                        CATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGG       >  SRR4302541.1315840/1‑94 (MQ=60)

                                                                                         ATGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGG      <  SRR4302541.2822957/94‑1 (MQ=60)

                                                                                          TGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA     <  SRR4302541.8798602/94‑1 (MQ=60)

                                                                                          TGGCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACCGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGA     <  SRR4302541.7314828/94‑1 (MQ=60)

                                                                                            GCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGAAG   <  SRR4302541.7939038/94‑1 (MQ=60)

                                                                                            GCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGAAG   <  SRR4302541.78307/94‑1 (MQ=60)

                                                                                            GCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGAAG   >  SRR4302541.4408776/1‑94 (MQ=60)

                                                                                            GCATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGAAG   <  SRR4302541.4768811/94‑1 (MQ=60)

                                                                                             CATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGAAGA  <  SRR4302541.2525846/94‑1 (MQ=60)

AGCAGGGCGGTTAATTTTTCCAGCAGGGAAATGTATGTGTCAGCACATTCAAAACGCAGCGTTGCTTTGTCTTCCCACAGCGCCAGTTCATGGTATTCCGGGGCACTAAAGTCGAAGTTCATATAGCAACTGTTATCAACATGGCAGTAATACTTCTGCGTGCTGACAAACGTAGGCTGTGGGAAGA  >  NC_000913/4066129‑4066315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`