Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,130,398 |
A→G |
D68G (GAC→GGC) |
metF → |
5,10‑methylenetetrahydrofolate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,130,398 | 0 | A | G | 99.2%
| 889.9
/ ‑3.7
| 265 | D68G (GAC→GGC) | metF | 5,10‑methylenetetrahydrofolate reductase |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (113/150); total (113/152) |
| Fisher's exact test for biased strand distribution p-value = 5.09e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 |
Only 100 of 271 total aligned reads displayed.
AGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACG > NC_000913/4130308‑4130487
|
aGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGcc > 1:7437116/1‑93 (MQ=255)
gCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCg > 2:1291472/1‑93 (MQ=255)
cAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGt > 2:2058129/1‑93 (MQ=255)
aGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTa < 2:8431263/93‑1 (MQ=255)
aGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTa < 1:2047311/93‑1 (MQ=255)
cccTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGc < 1:7237979/93‑1 (MQ=255)
cTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGcac < 2:7402421/93‑1 (MQ=255)
tgGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGc < 1:232492/93‑1 (MQ=255)
tgGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGc < 1:2211802/93‑1 (MQ=255)
ggAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCa > 2:8739634/1‑93 (MQ=255)
aaCTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCatt < 1:3116308/93‑1 (MQ=255)
aCTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCatta > 2:3247301/1‑93 (MQ=255)
cTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCattat < 1:826973/93‑1 (MQ=255)
cTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCattat < 1:4907840/93‑1 (MQ=255)
tCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCattatt > 2:6391069/1‑93 (MQ=255)
ccATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCAttatta > 1:8715094/1‑93 (MQ=255)
atcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTaaa > 1:3877890/1‑93 (MQ=255)
atcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTaaa < 2:6876284/93‑1 (MQ=255)
agcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTaaa < 1:7044635/91‑1 (MQ=255)
tcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAg < 1:4293193/93‑1 (MQ=255)
tcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAg > 1:4256913/1‑93 (MQ=255)
tcgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAg < 2:2939289/93‑1 (MQ=255)
cgatcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAgg < 2:8192087/93‑1 (MQ=255)
atcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCa > 2:5005713/1‑93 (MQ=255)
atcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCa < 1:7778515/93‑1 (MQ=255)
atcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCa < 1:2119941/93‑1 (MQ=255)
atcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCa > 1:5221566/1‑93 (MQ=255)
atcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCa > 2:675275/1‑93 (MQ=255)
tcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAt < 1:3561762/93‑1 (MQ=255)
tcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAt > 2:8341692/1‑93 (MQ=255)
tcgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAt > 1:6491348/1‑93 (MQ=255)
cgCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAtt < 1:6820201/93‑1 (MQ=255)
gCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGATCTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTa < 2:1339150/93‑1 (MQ=255)
gCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTa < 2:1964590/93‑1 (MQ=255)
gCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTa > 1:8582754/1‑93 (MQ=255)
ccTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaa > 1:5363394/1‑93 (MQ=255)
ccTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaa > 1:4539992/1‑93 (MQ=255)
cTTAGCAGCCTGAAACCGAAGTTTGTATGGGTGGCCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaaa < 2:5562453/93‑1 (MQ=255)
cTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaaa < 2:7625992/93‑1 (MQ=255)
cTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTaaa < 1:3330737/93‑1 (MQ=255)
ttAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAg < 2:8751401/93‑1 (MQ=255)
ttAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAg > 1:1079726/1‑93 (MQ=255)
ttAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAg > 1:491764/1‑93 (MQ=255)
ttAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAg < 1:5529197/93‑1 (MQ=255)
tAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGa < 2:7132734/93‑1 (MQ=255)
tAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGa < 2:5864075/93‑1 (MQ=255)
agcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGAt < 2:2614530/93‑1 (MQ=255)
agcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGAt < 2:4309559/93‑1 (MQ=255)
agcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGAt > 2:1104329/1‑93 (MQ=255)
gcagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGTATTAAAGATc > 1:7982418/1‑93 (MQ=255)
cagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCg < 2:3452229/93‑1 (MQ=255)
cagcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCg < 1:5586251/93‑1 (MQ=255)
gcCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCa > 2:2720001/1‑93 (MQ=255)
tGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTg > 2:620966/1‑93 (MQ=255)
tGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTg > 2:6088674/1‑93 (MQ=255)
gAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTgg > 2:7174674/1‑93 (MQ=255)
gAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTgg < 1:62833/93‑1 (MQ=255)
aaCCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTc > 1:8370630/1‑93 (MQ=255)
aaCCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTc > 2:4482922/1‑93 (MQ=255)
ccGAAGTTGGTATCGGTGACCTATGGCGCGAACGCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTg < 1:3407110/93‑1 (MQ=255)
cGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTgg > 1:6043635/1‑93 (MQ=255)
gAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGa < 2:4091822/93‑1 (MQ=255)
aaGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGag > 1:2964596/1‑92 (MQ=255)
aaGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGaa > 2:6009230/1‑93 (MQ=255)
aaGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGaa < 1:2733789/93‑1 (MQ=255)
aaGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGaa > 2:3030318/1‑93 (MQ=255)
aGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAg < 2:382656/93‑1 (MQ=255)
aGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAg > 1:6618096/1‑93 (MQ=255)
gTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGc < 2:3329279/93‑1 (MQ=255)
ggTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCa < 2:791880/93‑1 (MQ=255)
ggTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCa < 1:2609086/93‑1 (MQ=255)
ggTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCa > 1:7009735/1‑93 (MQ=255)
gTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAt > 1:5745583/1‑93 (MQ=255)
gTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAt > 1:7849613/1‑93 (MQ=255)
gACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCATCGCATCt > 1:2502599/1‑93 (MQ=255)
cTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAc > 1:4065598/1‑93 (MQ=255)
tATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCTCTGGTCTGGAAGCGGCACCGCATCTTACt < 2:5930736/93‑1 (MQ=255)
aTGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATTGCACTGGTCTGGTAGCGGCACCGCATCTTACtt > 2:4739472/1‑93 (MQ=255)
aTGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACtt < 1:8067062/93‑1 (MQ=255)
ggCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGc > 2:2823754/1‑93 (MQ=255)
gcgcGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCa < 2:2451167/93‑1 (MQ=255)
gcgcGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCa < 1:1383083/93‑1 (MQ=255)
gcgAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCAtt < 1:1421512/93‑1 (MQ=255)
cgAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTg < 1:1603843/93‑1 (MQ=255)
gAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGa < 2:2239446/93‑1 (MQ=255)
aaCTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAt > 1:3729452/1‑93 (MQ=255)
aaCTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAt > 1:6475031/1‑93 (MQ=255)
aaCTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAt < 2:4829769/93‑1 (MQ=255)
aCTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATg > 1:6069343/1‑93 (MQ=255)
tCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCg < 2:7220137/93‑1 (MQ=255)
cGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAc < 2:4501740/93‑1 (MQ=255)
cGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAc > 2:2695865/1‑93 (MQ=255)
ggCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACg > 1:2020612/1‑93 (MQ=255)
gCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAATCGGCACCGCATCTTACTTGCATTGATGCGACGc < 1:2124612/93‑1 (MQ=255)
cGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGcc < 1:1221732/93‑1 (MQ=255)
gAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGccc < 1:3281177/93‑1 (MQ=255)
gAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGccc > 1:7569146/1‑93 (MQ=255)
aGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCcg > 1:1827144/1‑93 (MQ=255)
aGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCcg > 2:3613940/1‑93 (MQ=255)
gcgcGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCcgc > 2:2375075/1‑92 (MQ=255)
|
AGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACG > NC_000913/4130308‑4130487
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGCT > NC_000913/4130305‑4130491
|
TGGAGCAGACCCCGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGG < SRR4302541.5105987/94‑1 (MQ=60)
AGGAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGG < SRR4302541.2101411/94‑1 (MQ=60)
AGGAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGG < SRR4302541.7311438/94‑1 (MQ=60)
GGAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGC > SRR4302541.6253004/1‑94 (MQ=60)
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCC < SRR4302541.8013149/94‑1 (MQ=60)
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCC > SRR4302541.7516606/1‑94 (MQ=60)
GAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCC < SRR4302541.3819675/94‑1 (MQ=60)
GCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGT < SRR4302541.5766588/94‑1 (MQ=60)
CAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTA > SRR4302541.2426431/1‑94 (MQ=60)
CGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTCTGGCGCGAACTCCGGCGAGCGCGGCCGTCC < SRR4302541.7932818/94‑1 (MQ=60)
AGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTAC < SRR4302541.8908339/94‑1 (MQ=60)
AGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTAC > SRR4302541.2873835/1‑94 (MQ=60)
AGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTAC < SRR4302541.2067071/94‑1 (MQ=60)
CCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCA < SRR4302541.7315176/94‑1 (MQ=60)
GTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAca > SRR4302541.6816581/1‑92 (MQ=60)
TGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCA < SRR4302541.234305/94‑1 (MQ=60)
TGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCA < SRR4302541.2233251/94‑1 (MQ=60)
TGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCA > SRR4302541.2163624/1‑94 (MQ=60)
AACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTA < SRR4302541.4161132/94‑1 (MQ=60)
AACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTA < SRR4302541.3147847/94‑1 (MQ=60)
ACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTAT < SRR4302541.2112139/94‑1 (MQ=60)
CTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGGCGCCGTACGCACAGCATTATT > SRR4302541.8404477/1‑94 (MQ=60)
CTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATT < SRR4302541.4957911/94‑1 (MQ=60)
CTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATT < SRR4302541.4410686/94‑1 (MQ=60)
CTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATT < SRR4302541.834493/94‑1 (MQ=60)
CTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATT > SRR4302541.8404475/1‑94 (MQ=60)
CTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATT < SRR4302541.4957910/94‑1 (MQ=60)
TCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTA > SRR4302541.8808315/1‑94 (MQ=60)
CCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAA < SRR4302541.3369361/94‑1 (MQ=60)
CATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAA > SRR4302541.3916845/1‑94 (MQ=60)
CATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAA < SRR4302541.1272954/94‑1 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG < SRR4302541.5415725/94‑1 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG > SRR4302541.4299464/1‑94 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG < SRR4302541.4259019/94‑1 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG > SRR4302541.2572498/1‑94 (MQ=60)
ATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTAGGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG < SRR4302541.3969030/94‑1 (MQ=60)
AGCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAG < SRR4302541.7119548/94‑1 (MQ=60)
TCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGG < SRR4302541.4336080/94‑1 (MQ=60)
CGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGC < SRR4302541.1611526/94‑1 (MQ=60)
CGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGC < SRR4302541.8761015/94‑1 (MQ=60)
CGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGC > SRR4302541.2299638/1‑94 (MQ=60)
GATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCA > SRR4302541.785081/1‑94 (MQ=60)
GATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCA > SRR4302541.7414725/1‑94 (MQ=60)
GATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCA < SRR4302541.7618695/94‑1 (MQ=60)
GATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCA > SRR4302541.5275377/1‑94 (MQ=60)
ATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAT > SRR4302541.6557520/1‑94 (MQ=60)
ATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAT > SRR4302541.6557521/1‑94 (MQ=60)
ATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAT < SRR4302541.7861269/94‑1 (MQ=60)
ATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAT < SRR4302541.2140461/94‑1 (MQ=60)
ATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCAT < SRR4302541.8632376/94‑1 (MQ=60)
TCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATT < SRR4302541.3597807/94‑1 (MQ=60)
ACGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATT < SRR4302541.3867633/94‑1 (MQ=60)
CGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA > SRR4302541.4912761/1‑94 (MQ=60)
CGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA < SRR4302541.6893186/94‑1 (MQ=60)
CGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA > SRR4302541.8674887/1‑94 (MQ=60)
CGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTA > SRR4302541.7669575/1‑94 (MQ=60)
GCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAA > SRR4302541.5418475/1‑94 (MQ=60)
GCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAA > SRR4302541.1771996/1‑94 (MQ=60)
GCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAA > SRR4302541.4585878/1‑94 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG < SRR4302541.7120448/94‑1 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG > SRR4302541.1089794/1‑94 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG > SRR4302541.496412/1‑94 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG > SRR4302541.2141682/1‑94 (MQ=60)
CTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAG < SRR4302541.3364095/94‑1 (MQ=60)
TTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGA < SRR4302541.5585800/94‑1 (MQ=60)
AGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGTATTAAAGATC > SRR4302541.8070342/1‑94 (MQ=60)
AGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATC < SRR4302541.4846556/94‑1 (MQ=60)
GCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCG < SRR4302541.6542065/94‑1 (MQ=60)
GCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCG > SRR4302541.7955946/1‑94 (MQ=60)
CAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGC < SRR4302541.5643437/94‑1 (MQ=60)
GCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCAC < SRR4302541.7261709/94‑1 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG < SRR4302541.6515988/94‑1 (MQ=60)
CTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTG < SRR4302541.5467443/94‑1 (MQ=60)
TGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGG > SRR4302541.314820/1‑94 (MQ=60)
TGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGG > SRR4302541.314821/1‑94 (MQ=60)
GAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGT < SRR4302541.63341/94‑1 (MQ=60)
GAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGT > SRR4302541.3367429/1‑94 (MQ=60)
AAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGTATTGAAGATCGCACTGGTC > SRR4302541.7891839/1‑94 (MQ=60)
AAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTC < SRR4302541.237669/94‑1 (MQ=60)
AAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTC > SRR4302541.8461360/1‑94 (MQ=60)
AAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTC < SRR4302541.5805039/94‑1 (MQ=60)
AACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCT < SRR4302541.3882670/94‑1 (MQ=60)
AACCGAAGTTTCTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCT < SRR4302541.5766404/94‑1 (MQ=60)
ACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTG < SRR4302541.2221708/94‑1 (MQ=60)
ACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTG < SRR4302541.4527505/94‑1 (MQ=60)
CCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGG > SRR4302541.6105470/1‑94 (MQ=60)
CCGAAGTTGGTATCGGTGACCTATGGCGCGAACGCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGG < SRR4302541.3441117/94‑1 (MQ=60)
GAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAG > SRR4302541.2994447/1‑94 (MQ=60)
AAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAG < SRR4302541.6440360/94‑1 (MQ=60)
AAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAG < SRR4302541.7086417/94‑1 (MQ=60)
AAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAG < SRR4302541.5594697/94‑1 (MQ=60)
AAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAG > SRR4302541.6685923/1‑94 (MQ=60)
AAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAG < SRR4302541.2761166/94‑1 (MQ=60)
AGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGC < SRR4302541.3957378/94‑1 (MQ=60)
GTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCG > SRR4302541.3582237/1‑94 (MQ=60)
GTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCG > SRR4302541.810337/1‑94 (MQ=60)
TTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGC < SRR4302541.1942506/94‑1 (MQ=60)
TGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCA < SRR4302541.667739/94‑1 (MQ=60)
TATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACC < SRR4302541.8675550/94‑1 (MQ=60)
TATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACC < SRR4302541.4986659/94‑1 (MQ=60)
CGGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCA > SRR4302541.7084298/1‑94 (MQ=60)
GGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAT > SRR4302541.7935775/1‑94 (MQ=60)
GGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAT > SRR4302541.5804102/1‑94 (MQ=60)
GGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAT < SRR4302541.2635177/94‑1 (MQ=60)
GGTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCAT > SRR4302541.2142134/1‑94 (MQ=60)
GTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATC < SRR4302541.7986048/94‑1 (MQ=60)
GTGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATC > SRR4302541.5483692/1‑94 (MQ=60)
TGACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCATCGCATCT > SRR4302541.2527841/1‑94 (MQ=60)
GACCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTT > SRR4302541.4316683/1‑94 (MQ=60)
CCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAC > SRR4302541.4105726/1‑94 (MQ=60)
CCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAC < SRR4302541.1340588/94‑1 (MQ=60)
CCTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTAC < SRR4302541.3665918/94‑1 (MQ=60)
CTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACT < SRR4302541.6120827/94‑1 (MQ=60)
CTATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACT > SRR4302541.6860044/1‑94 (MQ=60)
TATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTT < SRR4302541.513680/94‑1 (MQ=60)
TATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTT < SRR4302541.206072/94‑1 (MQ=60)
ATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTG < SRR4302541.1766352/94‑1 (MQ=60)
ATGGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTG < SRR4302541.8155652/94‑1 (MQ=60)
GGCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCA > SRR4302541.3110126/1‑94 (MQ=60)
GCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCAT < SRR4302541.1932283/94‑1 (MQ=60)
GCGCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCAT < SRR4302541.1396657/94‑1 (MQ=60)
GCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTG < SRR4302541.1435343/94‑1 (MQ=60)
GCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTG < SRR4302541.7338153/94‑1 (MQ=60)
GCGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTG < SRR4302541.5977930/94‑1 (MQ=60)
CGAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGA < SRR4302541.1619797/94‑1 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGTATTGAT > SRR4302541.343785/1‑94 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT < SRR4302541.7003330/94‑1 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT < SRR4302541.8336744/94‑1 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT < SRR4302541.5313377/94‑1 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT > SRR4302541.6541019/1‑94 (MQ=60)
GAACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGAT > SRR4302541.3767020/1‑94 (MQ=60)
AACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATG < SRR4302541.8301113/94‑1 (MQ=60)
AACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATG > SRR4302541.6131319/1‑94 (MQ=60)
ACTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGC < SRR4302541.3360311/94‑1 (MQ=60)
CTCCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCG > SRR4302541.6245490/1‑94 (MQ=60)
CCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAC < SRR4302541.7003689/94‑1 (MQ=60)
CCGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGAC < SRR4302541.2779880/94‑1 (MQ=60)
CGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGCCG > SRR4302541.3098038/1‑94 (MQ=60)
CGGCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACG > SRR4302541.2040156/1‑94 (MQ=60)
GCGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAATCGGCACCGCATCTTACTTGCATTGATGCGACGCC < SRR4302541.2145166/94‑1 (MQ=60)
CGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCC > SRR4302541.1400888/1‑94 (MQ=60)
CGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCC > SRR4302541.1403009/1‑94 (MQ=60)
CGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCC > SRR4302541.7650034/1‑94 (MQ=60)
CGAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCC < SRR4302541.1233689/94‑1 (MQ=60)
GAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCG > SRR4302541.1844865/1‑94 (MQ=60)
GAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCG < SRR4302541.121144/94‑1 (MQ=60)
GAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCG > SRR4302541.6308210/1‑94 (MQ=60)
GAGCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCG < SRR4302541.3314250/94‑1 (MQ=60)
GCGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGAC < SRR4302541.2730872/94‑1 (MQ=60)
CGCGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACG > SRR4302541.2080944/1‑94 (MQ=60)
CGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGTCGCCAGACGAG > SRR4302541.852479/1‑94 (MQ=60)
CGGCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAG > SRR4302541.1248105/1‑94 (MQ=60)
GCCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGCT < SRR4302541.4526086/94‑1 (MQ=60)
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TGGAGCAGACCCTGTGGAACTCCATCGATCGCCTTAGCAGCCTGAAACCGAAGTTTGTATCGGTGACCTATGGCGCGAACTCCGGCGAGCGCGACCGTACGCACAGCATTATTAAAGGCATTAAAGATCGCACTGGTCTGGAAGCGGCACCGCATCTTACTTGCATTGATGCGACGCCCGACGAGCT > NC_000913/4130305‑4130491
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
