Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,132,580	T→A	I389N (ATC→AAC)	katG →	catalase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,132,580	0	T	A	98.4%	805.5 / ‑0.3	249	I389N (ATC→AAC)	katG	catalase
Reads supporting (aligned to +/- strand): ref base T (2/2); new base A (138/103); total (141/108)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.74e-01

Only 100 of 273 total aligned reads displayed.

TCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGA  >  NC_000913/4132490‑4132669

 cccGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAactc                                                                                        <  2:5005411/93‑1 (MQ=255)

  ccGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAactct                                                                                       <  1:7264212/93‑1 (MQ=255)

   cGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAactctc                                                                                      <  2:7119767/93‑1 (MQ=255)

     gATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCtcgt                                                                                    <  2:3745798/93‑1 (MQ=255)

      aTCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCtcgtc                                                                                   >  1:7914435/1‑93 (MQ=255)

      aTCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCtcgtc                                                                                   <  1:4236432/93‑1 (MQ=255)

       tCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCtcgtcg                                                                                  >  1:104725/1‑93 (MQ=255)

       tCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCtcgtcg                                                                                  <  1:5036634/93‑1 (MQ=255)

         cGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGtt                                                                                >  1:931970/1‑93 (MQ=255)

         cGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGtt                                                                                <  2:3114183/93‑1 (MQ=255)

          gTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGttt                                                                               <  1:7314170/93‑1 (MQ=255)

          gTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGttt                                                                               <  1:7187571/93‑1 (MQ=255)

          gTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGttt                                                                               >  1:1868245/1‑93 (MQ=255)

            ttGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTcc                                                                             <  2:4073614/93‑1 (MQ=255)

              gATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTc                                                                           >  2:6596981/1‑93 (MQ=255)

              gATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTc                                                                           >  2:5478456/1‑93 (MQ=255)

              gATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTc                                                                           <  2:4778458/93‑1 (MQ=255)

              gATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTc                                                                           >  2:3980504/1‑93 (MQ=255)

               aTCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCa                                                                          >  1:6654736/1‑93 (MQ=255)

                 ccGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAAc                                                                        >  2:5551660/1‑93 (MQ=255)

                  cGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACg                                                                       <  1:5201467/93‑1 (MQ=255)

                   gTCGAAGAAACGTAAACCGACAATGCAGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGa                                                                      <  2:7899430/93‑1 (MQ=255)

                    tCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGAt                                                                     <  1:8288187/93‑1 (MQ=255)

                    tCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGAt                                                                     <  2:8554430/93‑1 (MQ=255)

                     cGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATc                                                                    <  1:1706299/93‑1 (MQ=255)

                      gaagaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATcc                                                                   >  2:273769/1‑93 (MQ=255)

                      gaagaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATcc                                                                   <  2:1936621/93‑1 (MQ=255)

                        agaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGc                                                                 >  2:7205596/1‑93 (MQ=255)

                        agaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGc                                                                 >  1:7035596/1‑93 (MQ=255)

                         gaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGcg                                                                >  1:2937480/1‑92 (MQ=255)

                         gaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCa                                                                >  1:4102132/1‑93 (MQ=255)

                         gaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCa                                                                >  2:2418182/1‑93 (MQ=255)

                         gaaACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCa                                                                >  1:6233942/1‑93 (MQ=255)

                          aaaCGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAg                                                               >  1:6333999/1‑93 (MQ=255)

                          aaaCGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAg                                                               <  2:8425493/93‑1 (MQ=255)

                           aaCGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAgg                                                              >  2:6315429/1‑93 (MQ=255)

                           aaCGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAgg                                                              >  2:2164013/1‑93 (MQ=255)

                            aCGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGc                                                             <  2:4325635/93‑1 (MQ=255)

                              ctAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGt                                                           <  2:1467707/92‑1 (MQ=255)

                               tAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGtt                                                          <  1:8705901/93‑1 (MQ=255)

                                aaaCCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATACTCAGGCGTTc                                                         >  2:8235655/1‑93 (MQ=255)

                                 aaCCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCa                                                        >  2:919085/1‑93 (MQ=255)

                                    cGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGTTCCTCAGGCGCTCAACg                                                     >  1:6053019/1‑93 (MQ=255)

                                     gACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGa                                                    <  2:3580032/93‑1 (MQ=255)

                                        aaTGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGc                                                 >  1:3506652/1‑93 (MQ=255)

                                        aaTGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGc                                                 >  1:3860991/1‑93 (MQ=255)

                                          tGCTGTTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCt                                               <  2:3374599/93‑1 (MQ=255)

                                          tGCTGGTGACCGACCTGGCGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCt                                               <  1:5327405/93‑1 (MQ=255)

                                           gCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCtt                                              <  2:6839957/93‑1 (MQ=255)

                                             tGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTg                                            >  1:1276185/1‑93 (MQ=255)

                                              ggTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATTCGCAGGCGTTCAACGAATCCTTTGc                                           >  2:6996201/1‑93 (MQ=255)

                                                tGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGACCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGccc                                         <  2:3815998/93‑1 (MQ=255)

                                                 gactgaccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCg                                        <  1:317082/93‑1 (MQ=255)

                                                  accgaccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGt                                       >  1:5758026/1‑93 (MQ=255)

                                                   ccgaccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCGACGAAGCCTTTGCCCGTg                                      <  1:5974151/93‑1 (MQ=255)

                                                    cgaccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGc                                     >  1:3573195/1‑93 (MQ=255)

                                                     gtccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGcc                                    <  2:2103447/91‑1 (MQ=255)

                                                     gaccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGcc                                    >  1:6869914/1‑93 (MQ=255)

                                                     gaccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGcc                                    <  2:6091982/93‑1 (MQ=255)

                                                     gaccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGcc                                    <  2:2193682/93‑1 (MQ=255)

                                                      accTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCt                                   >  2:1430058/1‑93 (MQ=255)

                                                       ccTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTg                                  <  1:7978076/93‑1 (MQ=255)

                                                        ctaaCGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTgg                                 >  2:5772308/4‑93 (MQ=255)

                                                        cTGACGCTGCGTTTTGATCCTGAGTTCGAGCAGAACTCCCGTCGGTTCCTCAACGCCCCCCAGGCGTTCAACGAAGCCTTTGCCGTTGCCTgg                                 >  1:2890164/1‑93 (MQ=255)

                                                        cTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTgg                                 <  1:2542756/93‑1 (MQ=255)

                                                         tGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCATCGCAGCCTTTGCCCGTGCCTGGt                                >  2:5986025/1‑93 (MQ=255)

                                                         tGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGt                                >  2:1676810/1‑93 (MQ=255)

                                                          gACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGtt                               >  2:1805420/1‑93 (MQ=255)

                                                          gACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGtt                               <  1:8662470/93‑1 (MQ=255)

                                                           aCGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTc                              <  2:3282413/93‑1 (MQ=255)

                                                            cGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCa                             >  2:3092889/1‑93 (MQ=255)

                                                              cTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCaaa                           >  2:4648720/1‑93 (MQ=255)

                                                                gCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACt                         <  1:4951603/93‑1 (MQ=255)

                                                                  gTTTTGATCCTGAGTTCGAGAAGAACTCTCGTTGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGa                       >  2:2237014/1‑93 (MQ=255)

                                                                  gTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACtta                       >  1:5378474/1‑91 (MQ=255)

                                                                   ttttGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAc                      >  1:3533017/1‑93 (MQ=255)

                                                                   ttttGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAc                      >  2:7851294/1‑93 (MQ=255)

                                                                      tGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGca                   <  2:3671144/93‑1 (MQ=255)

                                                                       gATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGcac                  >  2:1389880/1‑93 (MQ=255)

                                                                        aTCCTGAGTTCGAGAAGACCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGcaca                 <  2:6355060/93‑1 (MQ=255)

                                                                        aTCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGcaca                 <  1:2159889/93‑1 (MQ=255)

                                                                         tCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAg                <  1:3099868/93‑1 (MQ=255)

                                                                         tCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAg                <  2:7601725/93‑1 (MQ=255)

                                                                          ccTGAGTTCGAGAAGAACTCTCTTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTTCCCGTGCCTGGGTCAAACTGACGTACAgg               >  1:7819880/1‑93 (MQ=255)

                                                                          ccTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAgg               >  2:80277/1‑93 (MQ=255)

                                                                            tGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGGAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGa             >  1:1988849/1‑93 (MQ=255)

                                                                             gAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGat            <  2:6517862/93‑1 (MQ=255)

                                                                              aggtCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGata           <  1:2724837/90‑1 (MQ=255)

                                                                              aGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGata           <  1:752090/93‑1 (MQ=255)

                                                                                 tggagaAGATCCCCAGTCGTTGCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATgg        <  2:4461885/91‑1 (MQ=255)

                                                                                 tCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTCACGCACAGGGATATgg        >  1:1403506/1‑93 (MQ=255)

                                                                                  gtaaaagaGCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTGGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATggg       <  1:2095422/89‑1 (MQ=255)

                                                                                  cGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATggg       <  2:2796928/93‑1 (MQ=255)

                                                                                  cGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATggg       <  2:2948399/93‑1 (MQ=255)

                                                                                   gagaAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATgggg      >  2:6529704/1‑93 (MQ=255)

                                                                                   gagaAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATgggg      <  2:1195738/93‑1 (MQ=255)

                                                                                     gaagaaCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCACCGAAGCCTTGGCCCGGGCCTGGTCCAAACTGACGAACAGGAATATGGGGcg    >  1:4502125/1‑92 (MQ=255)

                                                                                      aagaACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCg   >  1:2151996/1‑93 (MQ=255)

                                                                                      aagaACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCg   <  2:5652493/93‑1 (MQ=255)

                                                                                      aagaACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGCGATATGGGGCCg   >  1:5693931/1‑93 (MQ=255)

TCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGA  >  NC_000913/4132490‑4132669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAAAT  >  NC_000913/4132487‑4132672

TTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAA                                                                                              <  SRR4302541.3923315/94‑1 (MQ=60)

TTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAA                                                                                              <  SRR4302541.6686791/94‑1 (MQ=60)

   TCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTCCGAGAAGAACTC                                                                                           >  SRR4302541.2145291/1‑94 (MQ=60)

    CCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCT                                                                                          <  SRR4302541.6398093/94‑1 (MQ=60)

     CCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTC                                                                                         <  SRR4302541.7341705/94‑1 (MQ=60)

     CCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTC                                                                                         <  SRR4302541.2143271/94‑1 (MQ=60)

     CCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTC                                                                                         <  SRR4302541.502721/94‑1 (MQ=60)

     CCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACGCTC                                                                                         <  SRR4302541.5043795/94‑1 (MQ=60)

      CGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCG                                                                                        <  SRR4302541.2080412/94‑1 (MQ=60)

       GGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGT                                                                                       <  SRR4302541.2279005/94‑1 (MQ=60)

        GATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTC                                                                                      >  SRR4302541.8001528/1‑94 (MQ=60)

         ATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGCCCTGACGCTGCGTTTTGATCCTGAGTTGGAGAAGAACTCTCGTCG                                                                                     >  SRR4302541.6053616/1‑94 (MQ=60)

         ATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCG                                                                                     >  SRR4302541.105604/1‑94 (MQ=60)

         ATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCG                                                                                     <  SRR4302541.4225835/94‑1 (MQ=60)

         ATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCG                                                                                     >  SRR4302541.5911091/1‑94 (MQ=60)

         ATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCG                                                                                     <  SRR4302541.4278671/94‑1 (MQ=60)

         ATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCG                                                                                     >  SRR4302541.7320212/1‑94 (MQ=60)

          TCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGT                                                                                    <  SRR4302541.5088453/94‑1 (MQ=60)

           CCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTT                                                                                   >  SRR4302541.7081387/1‑94 (MQ=60)

           CCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTT                                                                                   >  SRR4302541.940778/1‑94 (MQ=60)

            CGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTT                                                                                  >  SRR4302541.2174817/1‑94 (MQ=60)

            CGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTT                                                                                  >  SRR4302541.1886242/1‑94 (MQ=60)

            CGTGTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTT                                                                                  <  SRR4302541.3173399/94‑1 (MQ=60)

             GTTTGATCCGTCGAAGAAACGTGAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTC                                                                                 >  SRR4302541.1548614/1‑94 (MQ=60)

             GTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTC                                                                                 <  SRR4302541.7392251/94‑1 (MQ=60)

             GTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTC                                                                                 <  SRR4302541.7264243/94‑1 (MQ=60)

             GTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTCTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTC                                                                                 >  SRR4302541.1964821/1‑94 (MQ=60)

               TTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCT                                                                               <  SRR4302541.8851547/94‑1 (MQ=60)

                 GATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCA                                                                             >  SRR4302541.6723010/1‑94 (MQ=60)

                   ACCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAAC                                                                           <  SRR4302541.2891515/94‑1 (MQ=60)

                    CCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACG                                                                          <  SRR4302541.5336562/94‑1 (MQ=60)

                    CCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACG                                                                          <  SRR4302541.3652901/94‑1 (MQ=60)

                    CCATCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACG                                                                          <  SRR4302541.5336561/94‑1 (MQ=60)

                     CGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGA                                                                         <  SRR4302541.5255030/94‑1 (MQ=60)

                      GTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGAT                                                                        >  SRR4302541.1300708/1‑94 (MQ=60)

                       TCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATC                                                                       <  SRR4302541.5548436/94‑1 (MQ=60)

                       TCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATC                                                                       <  SRR4302541.8378334/94‑1 (MQ=60)

                        CGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCC                                                                      <  SRR4302541.359550/94‑1 (MQ=60)

                        CGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCC                                                                      >  SRR4302541.3568729/1‑94 (MQ=60)

                        CGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCC                                                                      <  SRR4302541.1723004/94‑1 (MQ=60)

                         GAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCG                                                                     <  SRR4302541.6293601/94‑1 (MQ=60)

                         GAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCG                                                                     <  SRR4302541.6428035/94‑1 (MQ=60)

                         GAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCG                                                                     >  SRR4302541.1599449/1‑94 (MQ=60)

                         GAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCG                                                                     >  SRR4302541.8799323/1‑94 (MQ=60)

                          AAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGC                                                                    >  SRR4302541.7110386/1‑94 (MQ=60)

                          AAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGC                                                                    >  SRR4302541.7110388/1‑94 (MQ=60)

                           AGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCG                                                                   >  SRR4302541.2967020/1‑94 (MQ=60)

                           AGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCA                                                                   >  SRR4302541.6297641/1‑94 (MQ=60)

                           AGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCA                                                                   >  SRR4302541.4142625/1‑94 (MQ=60)

                           AGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCA                                                                   >  SRR4302541.4142626/1‑94 (MQ=60)

                           AGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCA                                                                   >  SRR4302541.2031758/1‑94 (MQ=60)

                            GAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAG                                                                  >  SRR4302541.6398750/1‑94 (MQ=60)

                            AAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAG                                                                  <  SRR4302541.3076362/94‑1 (MQ=60)

                             AAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGG                                                                 >  SRR4302541.183874/1‑94 (MQ=60)

                             AAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGG                                                                 <  SRR4302541.6342509/94‑1 (MQ=60)

                              AACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGC                                                                >  SRR4302541.3428401/1‑94 (MQ=60)

                                CGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGT                                                              <  SRR4302541.5793098/94‑1 (MQ=60)

                                 GTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTT                                                             >  SRR4302541.4825948/1‑94 (MQ=60)

                                  TAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTC                                                            <  SRR4302541.8799045/94‑1 (MQ=60)

                                      CCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGTTCCTCAGGCGCTCAACG                                                        >  SRR4302541.6114897/1‑94 (MQ=60)

                                        GACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAA                                                      >  SRR4302541.2298638/1‑94 (MQ=60)

                                          CAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGC                                                    >  SRR4302541.3899832/1‑94 (MQ=60)

                                          CAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGC                                                    >  SRR4302541.3542136/1‑94 (MQ=60)

                                          CAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGC                                                    >  SRR4302541.3541876/1‑94 (MQ=60)

                                           AATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCC                                                   <  SRR4302541.4764095/94‑1 (MQ=60)

                                           AATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCC                                                   >  SRR4302541.7416760/1‑94 (MQ=60)

                                            ATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCT                                                  >  SRR4302541.2625106/1‑94 (MQ=60)

                                            ATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCT                                                  <  SRR4302541.7993681/94‑1 (MQ=60)

                                             TGCTGGTGACCGACCTGGCGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTT                                                 <  SRR4302541.5382220/94‑1 (MQ=60)

                                               CTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTG                                               >  SRR4302541.3041783/1‑94 (MQ=60)

                                               CTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTG                                               <  SRR4302541.6233148/94‑1 (MQ=60)

                                               CTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTG                                               <  SRR4302541.7628926/94‑1 (MQ=60)

                                               CTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTG                                               >  SRR4302541.1288862/1‑94 (MQ=60)

                                                  GTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCC                                            <  SRR4302541.6870300/94‑1 (MQ=60)

                                                    GACTGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGT                                          <  SRR4302541.319898/94‑1 (MQ=60)

                                                    GACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGT                                          <  SRR4302541.8456822/94‑1 (MQ=60)

                                                    GACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGT                                          >  SRR4302541.5816628/1‑94 (MQ=60)

                                                      CCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCGACGAAGCCTTTGCCCGTGC                                        <  SRR4302541.6035141/94‑1 (MQ=60)

                                                      CCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGC                                        >  SRR4302541.3609394/1‑94 (MQ=60)

                                                       CGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCC                                       >  SRR4302541.2596886/1‑94 (MQ=60)

                                                       CGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCC                                       >  SRR4302541.6943300/1‑94 (MQ=60)

                                                       CGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCC                                       <  SRR4302541.3547649/94‑1 (MQ=60)

                                                       CGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCC                                       >  SRR4302541.8048667/1‑94 (MQ=60)

                                                        GACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCT                                      >  SRR4302541.5807624/1‑94 (MQ=60)

                                                          CCTGACGCTGCGTTTTGATCCTGAGTTCGAGCAGAACTCCCGTCGGTTCCTCAACGCCCCCCAGGCGTTCAACGAAGCCTTTGCCGTTGCCTGG                                    >  SRR4302541.2919204/1‑94 (MQ=55)

                                                          CCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGG                                    <  SRR4302541.8065972/94‑1 (MQ=60)

                                                          CCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGG                                    >  SRR4302541.5949111/1‑94 (MQ=60)

                                                          CCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTCCCTGG                                    >  SRR4302541.2919205/1‑94 (MQ=60)

                                                           CTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGT                                   >  SRR4302541.51198/1‑94 (MQ=60)

                                                           CTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGT                                   <  SRR4302541.2568269/94‑1 (MQ=60)

                                                           CTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGT                                   <  SRR4302541.6416869/94‑1 (MQ=60)

                                                             GACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTC                                 <  SRR4302541.8755178/94‑1 (MQ=60)

                                                             GACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTC                                 <  SRR4302541.4058438/94‑1 (MQ=60)

                                                              ACGCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCA                                <  SRR4302541.1203004/94‑1 (MQ=60)

                                                                GCTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAA                              >  SRR4302541.8776864/1‑94 (MQ=60)

                                                                 CTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAAC                             >  SRR4302541.8498466/1‑94 (MQ=60)

                                                                 CTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAAC                             >  SRR4302541.5409540/1‑94 (MQ=60)

                                                                 CTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAAC                             >  SRR4302541.5156337/1‑94 (MQ=60)

                                                                 CTGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAAC                             <  SRR4302541.7816582/94‑1 (MQ=60)

                                                                  TGCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACT                            >  SRR4302541.7388461/1‑94 (MQ=60)

                                                                   GCGTTTTGATCCTGAGTTCGAGAGGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTG                           >  SRR4302541.7245407/1‑94 (MQ=60)

                                                                   GCGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTG                           <  SRR4302541.5002218/94‑1 (MQ=60)

                                                                    CGTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTTA                          >  SRR4302541.5433675/1‑94 (MQ=60)

                                                                     GTTTTGTTCCTGAGTTCAAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAC                         <  SRR4302541.380526/94‑1 (MQ=60)

                                                                     GTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAC                         >  SRR4302541.7033016/1‑94 (MQ=60)

                                                                     GTTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAC                         >  SRR4302541.3568623/1‑94 (MQ=60)

                                                                      TTTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACG                        <  SRR4302541.970440/94‑1 (MQ=60)

                                                                       TTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGC                       >  SRR4302541.4416670/1‑94 (MQ=60)

                                                                       TTTGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGC                       <  SRR4302541.31809/94‑1 (MQ=60)

                                                                         TGATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCAC                     >  SRR4302541.2901908/1‑94 (MQ=60)

                                                                          GATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACG                    >  SRR4302541.1321599/1‑94 (MQ=60)

                                                                          GATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACA                    >  SRR4302541.8140259/1‑94 (MQ=60)

                                                                           ATCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAG                   <  SRR4302541.2180780/94‑1 (MQ=60)

                                                                            TCCTGAGTTCGAGAAGAACTCTCTTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTTCCCGTGCCTGGGTCAAACTGACGTACAGG                  >  SRR4302541.7904662/1‑94 (MQ=60)

                                                                            TCCTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGG                  <  SRR4302541.3131287/94‑1 (MQ=60)

                                                                              CTGAGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGGAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGA                >  SRR4302541.2008081/1‑94 (MQ=60)

                                                                                 AGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATAT             <  SRR4302541.759189/94‑1 (MQ=60)

                                                                                 AGTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATAT             >  SRR4302541.7487103/1‑94 (MQ=60)

                                                                                 AGGTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATAT             <  SRR4302541.2752066/94‑1 (MQ=60)

                                                                                  GTTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATG            <  SRR4302541.8054692/94‑1 (MQ=60)

                                                                                   TTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGG           <  SRR4302541.4350593/94‑1 (MQ=60)

                                                                                   TTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGG           <  SRR4302541.8274007/94‑1 (MQ=60)

                                                                                   TTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTCACGCACAGGGATATGG           >  SRR4302541.1417217/1‑94 (MQ=60)

                                                                                   TTCGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTCCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGG           <  SRR4302541.5612317/94‑1 (MQ=60)

                                                                                     CGAGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGG         >  SRR4302541.7316407/1‑94 (MQ=60)

                                                                                       AGAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCACCGAAGCCTTGGCCCGGGCCTGGTCCAAACTGACGAACAGGAATATGGGGCG       >  SRR4302541.4547539/1‑94 (MQ=60)

                                                                                        GAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCG      >  SRR4302541.2172804/1‑94 (MQ=60)

                                                                                        GAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCG      <  SRR4302541.1949913/94‑1 (MQ=60)

                                                                                        GAAGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGCGATATGGGGCCG      >  SRR4302541.5752005/1‑94 (MQ=60)

                                                                                          AGAACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAA    >  SRR4302541.6786173/1‑94 (MQ=60)

                                                                                            AACTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAAAT  >  SRR4302541.1412562/1‑94 (MQ=60)

TTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAAAT  >  NC_000913/4132487‑4132672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`