Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I1 R1 | 744 | 338.8 | 17650688 | 97.8% | 17262372 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,200,901 | A→G | *466W (TGA→TGG) T2A (ACG→GCG) |
hydH → hydG → |
HydH HydG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,200,901 | 0 | A | G | 100.0% | 1023.5 / NA | 297 | *466W (TGA→TGG) T2A (ACG→GCG) | hydH hydG | HydH HydG |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (161/136); total (161/136) | |||||||||||
Only 100 of 309 total aligned reads displayed.
TACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > NC_000913/4200811‑4200990 | aGGTCGCAAGGCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATAGTACGCGTAAGGACCCACAAGGATGGCGCACGataa < 2:4746240/93‑1 (MQ=255) aGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataa > 2:4409886/1‑93 (MQ=255) aGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataa > 1:8170703/1‑93 (MQ=255) aGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataa < 2:7908923/93‑1 (MQ=255) ggTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataat > 2:3820911/1‑93 (MQ=255) gTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataata < 2:2056059/93‑1 (MQ=255) gcGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAatat < 2:1192860/92‑1 (MQ=255) gCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCg < 2:2924197/93‑1 (MQ=255) cAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGa > 1:7993387/1‑93 (MQ=255) aGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGcta > 1:8708248/1‑93 (MQ=255) gCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGatat < 1:7131672/93‑1 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc > 2:840297/1‑93 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc < 1:691905/93‑1 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc < 2:2178410/93‑1 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtg > 1:2663872/1‑93 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtg > 1:6715059/1‑93 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtg > 1:45817/1‑93 (MQ=255) aggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggt < 2:5865595/93‑1 (MQ=255) aggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggt > 2:6084967/1‑93 (MQ=255) aggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggg > 2:1881208/1‑92 (MQ=255) gggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtg > 2:3635649/1‑93 (MQ=255) gggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtg < 2:6142957/93‑1 (MQ=255) ggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtgg < 1:4328805/93‑1 (MQ=255) gAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggt < 2:2758628/93‑1 (MQ=255) gAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggt > 1:4699050/1‑93 (MQ=255) gAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggt > 2:5470358/1‑93 (MQ=255) gAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtgggggg > 2:2294076/1‑92 (MQ=255) aaaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtg > 1:3235524/1‑93 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGCTATTCtggtggtgg > 1:2267438/1‑93 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtgg > 2:4279689/1‑93 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtgg > 2:3400432/1‑93 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtgg < 2:3046091/93‑1 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCCTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtgg > 2:1377568/1‑93 (MQ=255) ggCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatg < 2:4062134/93‑1 (MQ=255) ggCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatg < 1:747258/93‑1 (MQ=255) gCTCAACGTTCCCCCTCTGTCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatga < 2:3777059/93‑1 (MQ=255) gCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatga < 1:905054/93‑1 (MQ=255) cTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatgat < 1:992703/93‑1 (MQ=255) cTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatgat < 1:6275675/93‑1 (MQ=255) tCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGatgatg > 2:8194368/1‑93 (MQ=255) tCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGatgatg > 1:3411375/1‑93 (MQ=255) tCAACGTTCAACCTCTGGCTTCCGGTCAATATTACGCGTCAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGCTGGTGGatgatg > 1:3009970/1‑93 (MQ=255) cAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAtgatga < 2:7995513/93‑1 (MQ=255) cAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAtgatga > 2:6577003/1‑93 (MQ=255) aaCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAc > 2:1469046/1‑93 (MQ=255) aaCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAc > 2:265813/1‑93 (MQ=255) aCGTTCTCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACa < 1:6843546/93‑1 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa < 2:7028795/93‑1 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa < 1:1059632/93‑1 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa > 2:3877466/1‑93 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa > 2:317949/1‑93 (MQ=255) tCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAg < 1:405043/93‑1 (MQ=255) ccccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGcc < 1:1404807/92‑1 (MQ=255) ccccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGcc < 1:5896081/92‑1 (MQ=255) aCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGcc > 2:72988/1‑93 (MQ=255) cccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCa > 2:5704817/1‑93 (MQ=255) ccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc < 1:3344844/93‑1 (MQ=255) ccTCTGGCTTCCGGTCAAGATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc < 1:2129901/93‑1 (MQ=255) ccTCTGGCTTCCGCTCAATATTACGCGTAAGGAACCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc < 1:7244007/93‑1 (MQ=255) ctctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACt > 1:4752313/1‑93 (MQ=255) tctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTTGTGGATGATGACATTAGCCACTg > 2:4791665/1‑93 (MQ=255) tctGGCTTCCGGTCAATATTACGCGAAAGGACCCACAAGGATGGCGCACGATAATATCGATCTTCTGGTGGTGGATGATCACATTAACCACtc > 1:6361753/1‑92 (MQ=255) ttCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAt > 1:6511518/1‑93 (MQ=255) tCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtt > 1:1160280/1‑93 (MQ=255) ccGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAttt > 1:5050921/1‑93 (MQ=255) cGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtttt < 1:4169659/93‑1 (MQ=255) cGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtttt < 1:7353289/93‑1 (MQ=255) ggTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTg > 2:8069790/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc > 2:2481069/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc > 1:5714676/1‑93 (MQ=255) cAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAg < 2:4577217/93‑1 (MQ=255) cAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAg < 2:5016300/93‑1 (MQ=255) cAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAg < 2:8580008/93‑1 (MQ=255) atatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGc < 1:8512721/93‑1 (MQ=255) tatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCt > 2:3296735/1‑93 (MQ=255) tatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCt < 2:6302732/93‑1 (MQ=255) tatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCt < 1:7641152/93‑1 (MQ=255) tACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTa > 1:3639532/1‑93 (MQ=255) tACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTa < 2:557783/93‑1 (MQ=255) gcgcgTAAGGACCCACAAGGAGGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAc < 1:5296080/92‑1 (MQ=255) aCGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAc < 2:166804/93‑1 (MQ=255) cgcgTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACt < 1:6232233/93‑1 (MQ=255) cgTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgc < 1:1692144/93‑1 (MQ=255) tAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcgc > 2:776517/1‑93 (MQ=255) aaGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGcgcg < 2:5354925/93‑1 (MQ=255) aGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCgg > 1:6052451/1‑93 (MQ=255) aGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCgg > 1:4254051/1‑93 (MQ=255) ggACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGc > 1:1121129/1‑93 (MQ=255) gACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCt > 1:5586308/1‑93 (MQ=255) ccACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTggg > 2:8280194/1‑93 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGCGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCGgggg > 2:6789374/1‑93 (MQ=255) acaAGGATGGCGCACGATAATATCGATATTCTGGTGTTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTTGGGc > 1:1950305/1‑93 (MQ=255) aaGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCta < 2:12397/93‑1 (MQ=255) aGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCtat > 2:601200/1‑93 (MQ=255) ggATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCtata < 1:1010469/93‑1 (MQ=255) ggATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCtata > 2:8503390/1‑93 (MQ=255) ggATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCtata < 1:4552755/93‑1 (MQ=255) gATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATaa > 2:7501308/1‑93 (MQ=255) gATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTAGGGCTATaa < 1:2522739/93‑1 (MQ=255) aTGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAc > 1:166006/1‑93 (MQ=255) | TACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > NC_000913/4200811‑4200990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTCG > NC_000913/4200808‑4200994 | TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG > SRR4302541.8155131/1‑94 (MQ=60)GGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG < SRR4302541.2498449/94‑1 (MQ=60) GGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGC > SRR4302541.1980343/1‑94 (MQ=60) GGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGC < SRR4302541.1466698/94‑1 (MQ=60) TACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGC < SRR4302541.6955475/94‑1 (MQ=60) CAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCAC < SRR4302541.1689617/94‑1 (MQ=60) CAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCAC < SRR4302541.3380783/94‑1 (MQ=60) AATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCAGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACG < SRR4302541.1970830/94‑1 (MQ=60) ATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGA > SRR4302541.886729/1‑94 (MQ=60) ATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGA > SRR4302541.6374609/1‑94 (MQ=60) TTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCCCGAT > SRR4302541.7171552/1‑94 (MQ=60) TCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATA > SRR4302541.2815164/1‑94 (MQ=60) CAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAA > SRR4302541.8259922/1‑94 (MQ=60) CAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAA > SRR4302541.4724845/1‑94 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAAT < SRR4302541.1004237/94‑1 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAAT > SRR4302541.7291495/1‑94 (MQ=60) GGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATA < SRR4302541.3621516/94‑1 (MQ=60) GTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATAT > SRR4302541.614834/1‑94 (MQ=60) TCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATC < SRR4302541.6138738/94‑1 (MQ=60) TCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATC < SRR4302541.6625584/94‑1 (MQ=60) GCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGA > SRR4302541.4151449/1‑94 (MQ=60) GCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGA < SRR4302541.6693282/94‑1 (MQ=60) GCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGA > SRR4302541.8081382/1‑94 (MQ=60) CAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGAT > SRR4302541.4249702/1‑94 (MQ=60) AAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGCTA > SRR4302541.8801415/1‑94 (MQ=60) AGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATAT > SRR4302541.946582/1‑94 (MQ=60) GCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATT < SRR4302541.7207661/94‑1 (MQ=60) CAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCT < SRR4302541.698418/94‑1 (MQ=60) CAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATGACGCGTAAGGACGCACAAGGATGGCGCACGAGAATATCGtaaggcg > SRR4302541.6553974/1‑87 (MQ=60) CAGGAGGGAAAAGGCTCAACGTTAACCCTCTGGCTTCCGGTCAATATTACGCGGAAGGAACCACAAGGATGGCGCACGATAATATCGATATTCT > SRR4302541.6553975/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302541.1453595/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302541.3769889/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302541.346054/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302541.46163/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302541.2690361/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG < SRR4302541.6374306/94‑1 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG < SRR4302541.1036764/94‑1 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302541.6786697/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302541.6786698/1‑94 (MQ=60) GGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGG < SRR4302541.4334590/94‑1 (MQ=60) AGGGCAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCATTTTTACGAGAAAGGACCACCAAGGATGGCGCACGATAATATCGATATTCTGGTG > SRR4302541.605227/1‑94 (MQ=60) AGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTG < SRR4302541.1168332/94‑1 (MQ=60) AGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTG > SRR4302541.5243599/1‑94 (MQ=60) GGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGG > SRR4302541.4762389/1‑94 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGT > SRR4302541.4746941/1‑94 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGT < SRR4302541.4372027/94‑1 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGT > SRR4302541.5798689/1‑94 (MQ=60) GGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGG > SRR4302541.1061265/1‑94 (MQ=60) GAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTG > SRR4302541.5146841/1‑94 (MQ=60) GAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTG > SRR4302541.3268197/1‑94 (MQ=60) GAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTG > SRR4302541.4330044/1‑94 (MQ=60) GAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTG < SRR4302541.459751/94‑1 (MQ=60) AAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGCTATTCTGGTGGTGG > SRR4302541.2289347/1‑94 (MQ=60) AAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGG > SRR4302541.2242117/1‑94 (MQ=60) AAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGA < SRR4302541.2160544/94‑1 (MQ=60) AAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGA < SRR4302541.2564148/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302541.3282298/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302541.769452/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302541.8719533/94‑1 (MQ=60) AGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATG > SRR4302541.4715209/1‑94 (MQ=60) ACGCTCAACGTTCCCCCTCTGGCTTCCTGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATG < SRR4302541.7285442/94‑1 (MQ=60) GGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGA < SRR4302541.754335/94‑1 (MQ=60) GCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGAT < SRR4302541.913450/94‑1 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCACTATTACGCCTAAGGACGCACACGGATGGCGCACGATAATATCGATCTTCTGTTGGGGGATGTTG > SRR4302541.7418671/1‑94 (MQ=57) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG < SRR4302541.8384680/94‑1 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG < SRR4302541.6339756/94‑1 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG > SRR4302541.3445433/1‑94 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG < SRR4302541.1001945/94‑1 (MQ=60) CTCAACGTTCAACCTCTGGCTTCCGGTCAATATTACGCGTCAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGCTGGTGGATGATG > SRR4302541.3040357/1‑94 (MQ=60) TCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGA > SRR4302541.4669262/1‑94 (MQ=60) TCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGA > SRR4302541.5594402/1‑94 (MQ=60) TCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGA < SRR4302541.284995/94‑1 (MQ=60) aaacttgcgCCCTCTGGGTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAC < SRR4302541.3418872/85‑1 (MQ=60) CAACGTTCACCCTCTGGCTTCCGGTCAATATTACTCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAC < SRR4302541.1433068/94‑1 (MQ=60) CAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAC < SRR4302541.6330258/94‑1 (MQ=60) CAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAC < SRR4302541.8164635/94‑1 (MQ=60) CAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTATGGTGGTGGATGATGAC < SRR4302541.7465854/94‑1 (MQ=60) AACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACA > SRR4302541.115099/1‑94 (MQ=60) ACGTTCTCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACAT < SRR4302541.6000027/94‑1 (MQ=60) ACGTTCTCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACAT < SRR4302541.6916723/94‑1 (MQ=60) CGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATT < SRR4302541.1998877/94‑1 (MQ=60) CGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATT > SRR4302541.8242713/1‑94 (MQ=60) GTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTA < SRR4302541.5499633/94‑1 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302541.1069479/94‑1 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302541.8488744/94‑1 (MQ=60) TCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGC < SRR4302541.408795/94‑1 (MQ=60) CACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCC > SRR4302541.5926417/1‑94 (MQ=60) CCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCA < SRR4302541.1418529/94‑1 (MQ=60) CCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCA < SRR4302541.5956088/94‑1 (MQ=60) CCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAC > SRR4302541.7155539/1‑94 (MQ=60) CCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT > SRR4302541.4800871/1‑94 (MQ=60) CCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT > SRR4302541.4780118/1‑94 (MQ=60) CCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT < SRR4302541.3378286/94‑1 (MQ=60) CCTCTGGCTTCCGGTCAAGATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT < SRR4302541.2150494/94‑1 (MQ=60) CCTCTGGCTTCCGCTCAATATTACGCGTAAGGAACCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT < SRR4302541.7321269/94‑1 (MQ=60) CTCTGGCTTCCGGTCAATATTACGCGAAAGGACCCACAAGGATGGCGCACGATAATATCGATCTTCTGGTGGTGGATGATCACATTAACCACTC > SRR4302541.6426802/1‑94 (MQ=60) CTGGCTTCCGGTCAATATTACGCGCAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA > SRR4302541.4451749/1‑94 (MQ=60) TGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCAC > SRR4302541.4513787/1‑94 (MQ=60) TGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATTGATATTCTGGGGGGGGATGATGACATTAGCCACTGCAC > SRR4302541.7539096/1‑94 (MQ=60) GCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTA > SRR4302541.4601016/1‑94 (MQ=60) GCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTA > SRR4302541.7690141/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGCTGGCGCACGATCATATCGATATTCTGGTGTTGGATGATGACATTAGCCACTGacctct > SRR4302541.4854248/1‑88 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGtggattgatgaaattgccaacggcactat > SRR4302541.2821819/1‑65 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302541.4854247/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302541.6577947/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302541.779725/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302541.6577948/1‑94 (MQ=60) TTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATT < SRR4302541.1380810/94‑1 (MQ=60) TTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATT > SRR4302541.1171414/1‑94 (MQ=60) TTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATT < SRR4302541.7342765/94‑1 (MQ=60) TCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTT > SRR4302541.5102891/1‑94 (MQ=60) CGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTG < SRR4302541.7431844/94‑1 (MQ=60) CGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTG < SRR4302541.4210982/94‑1 (MQ=60) GGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGC > SRR4302541.5772944/1‑94 (MQ=60) GGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGC > SRR4302541.2576907/1‑94 (MQ=60) GTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCA < SRR4302541.5674087/94‑1 (MQ=60) CAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGG < SRR4302541.6321624/94‑1 (MQ=60) CAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGG > SRR4302541.1241386/1‑94 (MQ=60) CAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGG > SRR4302541.917594/1‑94 (MQ=60) AATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGC > SRR4302541.6536028/1‑94 (MQ=60) AATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGC > SRR4302541.7442196/1‑94 (MQ=60) AATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGC < SRR4302541.845294/94‑1 (MQ=60) ATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCT < SRR4302541.2341096/94‑1 (MQ=60) ATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCT < SRR4302541.8604363/94‑1 (MQ=60) TATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTT < SRR4302541.7722615/94‑1 (MQ=60) TATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTT > SRR4302541.4848516/1‑94 (MQ=60) TATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATGCTGGGGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTT < SRR4302541.1527750/94‑1 (MQ=60) ATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTT < SRR4302541.6880756/94‑1 (MQ=60) TTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTA > SRR4302541.3676439/1‑94 (MQ=60) TACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC < SRR4302541.8829408/94‑1 (MQ=60) TACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC < SRR4302541.1820826/94‑1 (MQ=60) GCGCGTAAGGACCCACAAGGAGGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACT < SRR4302541.5350598/94‑1 (MQ=60) CGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTG < SRR4302541.6295913/94‑1 (MQ=60) CGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTG < SRR4302541.5664595/94‑1 (MQ=60) CGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG < SRR4302541.1708756/94‑1 (MQ=60) CGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG < SRR4302541.1075187/94‑1 (MQ=60) GTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGC > SRR4302541.1685196/1‑94 (MQ=60) TAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCG > SRR4302541.7985257/1‑94 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG < SRR4302541.6940315/94‑1 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG > SRR4302541.6114328/1‑94 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG > SRR4302541.4296563/1‑94 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG > SRR4302541.1113515/1‑94 (MQ=60) AGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGC > SRR4302541.1131680/1‑94 (MQ=60) GGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCT > SRR4302541.5643495/1‑94 (MQ=60) ACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGG > SRR4302541.4133813/1‑94 (MQ=60) ACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGG > SRR4302541.3950109/1‑94 (MQ=60) CCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGG > SRR4302541.315252/1‑94 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG > SRR4302541.8716828/1‑94 (MQ=60) CACAAGGATGGCGCACGATAATATCGATATTCTGGTGTTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTTGGGC > SRR4302541.1969104/1‑94 (MQ=60) CACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGC > SRR4302541.3341562/1‑94 (MQ=60) CACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGC > SRR4302541.3157967/1‑94 (MQ=60) ACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCT > SRR4302541.2398761/1‑94 (MQ=60) GGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAA < SRR4302541.4598804/94‑1 (MQ=60) GGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAA < SRR4302541.1019824/94‑1 (MQ=60) GATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC < SRR4302541.3402733/94‑1 (MQ=60) GATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > SRR4302541.167250/1‑94 (MQ=60) GATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC < SRR4302541.1730/94‑1 (MQ=60) GATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTAGGGCTATAAC < SRR4302541.2548117/94‑1 (MQ=60) ATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACG < SRR4302541.4258015/94‑1 (MQ=60) GGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTC < SRR4302541.1153865/94‑1 (MQ=60) GGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTC < SRR4302541.5860563/94‑1 (MQ=60) GGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTC > SRR4302541.7984492/1‑94 (MQ=60) GCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTCG < SRR4302541.2796509/94‑1 (MQ=60) | TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTCG > NC_000913/4200808‑4200994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |