Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I2 R1 | 884 | 257.2 | 12958910 | 96.9% | 12557183 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,200,901 | A→G | *466W (TGA→TGG) T2A (ACG→GCG) |
hydH → hydG → |
HydH HydG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,200,901 | 0 | A | G | 99.7% | 987.5 / NA | 282 | *466W (TGA→TGG) T2A (ACG→GCG) | hydH hydG | HydH HydG |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (141/140); total (141/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 290 total aligned reads displayed.
TACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > NC_000913/4200811‑4200990 | aCAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGgcgc < 2:3775052/93‑1 (MQ=255) aCAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGgcgc > 2:1700123/1‑93 (MQ=255) aCAATTCAGGGCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGgcgc < 1:5369079/93‑1 (MQ=255) cAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCa > 1:4569685/1‑93 (MQ=255) aaTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCAc < 1:3930561/93‑1 (MQ=255) aTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACg > 2:1833052/1‑93 (MQ=255) aTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACg > 2:1362164/1‑93 (MQ=255) aTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACg > 2:4885657/1‑93 (MQ=255) ttCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGa > 2:5725762/1‑93 (MQ=255) ttCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGa > 2:1147146/1‑93 (MQ=255) aGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataa > 2:2395135/1‑93 (MQ=255) aGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataa > 2:5589609/1‑93 (MQ=255) ggTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACTataat < 1:4286210/93‑1 (MQ=255) ggTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGacaat > 2:4750234/1‑93 (MQ=255) gTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataata < 2:2247318/93‑1 (MQ=255) gTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGataata > 1:4618540/1‑93 (MQ=255) cGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATc < 2:4026394/93‑1 (MQ=255) aGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGata < 1:1288821/93‑1 (MQ=255) ccAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATAtt < 1:2348581/93‑1 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc < 1:3333937/93‑1 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc > 2:5553452/1‑93 (MQ=255) cAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTc > 1:5160049/1‑93 (MQ=255) aggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCt < 2:2923008/93‑1 (MQ=255) aggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCt < 1:4477876/93‑1 (MQ=255) ggaggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtg > 2:4647293/1‑93 (MQ=255) aggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggt < 1:3766942/93‑1 (MQ=255) aggGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggt > 2:4346753/1‑93 (MQ=255) gggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtg < 2:2769980/93‑1 (MQ=255) gggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtg > 2:4264250/1‑93 (MQ=255) gggAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtg < 1:1968668/93‑1 (MQ=255) gAAAAGGCTCAGCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggt < 1:607538/93‑1 (MQ=255) gAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggt > 2:2224994/1‑93 (MQ=255) aaaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtg > 2:4058471/1‑93 (MQ=255) aaaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCtggtggtgg > 1:2971757/1‑93 (MQ=255) agggCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGga < 1:15410/91‑1 (MQ=255) aaGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGga > 2:5695014/1‑93 (MQ=255) aGGCTCAACGTTCGCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgat < 2:5998178/93‑1 (MQ=255) aGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgat < 2:6347041/93‑1 (MQ=255) aGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgat < 2:2669122/93‑1 (MQ=255) aGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgag > 1:797159/1‑92 (MQ=255) ggCTCAACGTTCACCCTCTGGCTCCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatg < 1:166388/93‑1 (MQ=255) ggCTCAACGTGCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatg < 2:2971760/93‑1 (MQ=255) cTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGgatgat < 1:271876/93‑1 (MQ=255) aaCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAc < 1:4366168/93‑1 (MQ=255) aCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACa < 2:5300207/93‑1 (MQ=255) cGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACAt < 2:840550/93‑1 (MQ=255) cGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACAt < 2:186979/93‑1 (MQ=255) gTTCACCCTCTGGCTTCCGGTCACTATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACAtt > 2:5089301/1‑93 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa < 1:5802129/93‑1 (MQ=255) ttCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa < 2:5874116/93‑1 (MQ=255) tCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAg < 2:614527/93‑1 (MQ=255) tcccTCTGGCTTCCGGTCGATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGcc < 1:4972671/92‑1 (MQ=255) ccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc < 1:3847127/93‑1 (MQ=255) ccTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc > 1:3290769/1‑93 (MQ=255) ctctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACt > 2:1754141/1‑93 (MQ=255) ctctGGCTCCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACt < 1:4622759/93‑1 (MQ=255) ctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGc > 1:4427875/1‑93 (MQ=255) ctGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGc > 2:5634889/1‑93 (MQ=255) gCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACt > 1:4066310/1‑93 (MQ=255) ttCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAt > 1:6338075/1‑93 (MQ=255) tCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtt < 2:4687637/93‑1 (MQ=255) tCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtt > 2:1317217/1‑93 (MQ=255) cGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtttt < 2:5489560/93‑1 (MQ=255) ggTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTg > 2:3390010/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc > 2:1090484/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc < 1:778562/93‑1 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGCGGATGATGACATTCGCCACTGCACTATTTTGc > 1:2088126/1‑93 (MQ=255) gTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATACTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGc > 1:2512983/1‑93 (MQ=255) tCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCa < 2:5379900/93‑1 (MQ=255) cAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAg > 1:523406/1‑93 (MQ=255) aaTATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAgg > 1:2579244/1‑93 (MQ=255) atatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGc > 1:6165417/1‑93 (MQ=255) atatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGc > 1:4991169/1‑93 (MQ=255) atatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGc < 2:6218506/93‑1 (MQ=255) tatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATGTCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCt < 1:1462448/93‑1 (MQ=255) tatTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCt < 2:6094221/93‑1 (MQ=255) atTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCtt > 1:4699257/1‑93 (MQ=255) taagcgTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTa < 1:3227792/90‑1 (MQ=255) gTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcg < 2:4467696/93‑1 (MQ=255) tAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcgc > 1:1346114/1‑93 (MQ=255) aGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCgg > 2:3300226/1‑93 (MQ=255) aGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCgg > 2:519702/1‑93 (MQ=255) aGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCgg > 1:6437693/1‑93 (MQ=255) ggACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGGTGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGc > 2:3675467/1‑93 (MQ=255) ggACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGc > 1:3679789/1‑93 (MQ=255) ggACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGc > 2:4561673/1‑93 (MQ=255) ggACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGc < 2:749379/93‑1 (MQ=255) ggACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGc > 1:5874787/1‑93 (MQ=255) aCCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTg < 1:1619226/93‑1 (MQ=255) ccACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTggg > 1:3590188/1‑93 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg < 1:3076939/93‑1 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg > 2:3112083/1‑93 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg > 2:3537556/1‑93 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg > 1:5602773/1‑93 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg > 2:4506097/1‑93 (MQ=255) cacaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTgggg > 1:4210578/1‑93 (MQ=255) acaAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGc > 1:4791022/1‑93 (MQ=255) aaaGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCt < 2:2031272/92‑1 (MQ=255) aGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCtat > 1:1835514/1‑93 (MQ=255) aGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCtat > 2:4962841/1‑93 (MQ=255) | TACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > NC_000913/4200811‑4200990 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTC > NC_000913/4200808‑4200993 | gagtaaattgaatgcgaaAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG < SRR4302534.1399139/76‑1 (MQ=60)TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG < SRR4302534.4241948/94‑1 (MQ=60)TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGG < SRR4302534.2200592/94‑1 (MQ=60) GGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGC > SRR4302534.5091291/1‑94 (MQ=60) GTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCG < SRR4302534.4185543/94‑1 (MQ=60) TACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGC > SRR4302534.61568/1‑94 (MQ=60) TACAATTCAGGTCGCAAGCCAGGAGGGAAAAGCCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGC < SRR4302534.3726448/94‑1 (MQ=60) ACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCA > SRR4302534.4693575/1‑94 (MQ=60) ACAATTCAGGGCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCA < SRR4302534.5513767/94‑1 (MQ=60) CAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCAC > SRR4302534.3191584/1‑94 (MQ=60) AATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGTCCCACAAGGATGGCGCACG < SRR4302534.5384742/94‑1 (MQ=60) AATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACG < SRR4302534.5648367/94‑1 (MQ=60) AATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACG < SRR4302534.4035848/94‑1 (MQ=60) ATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGA > SRR4302534.4801999/1‑94 (MQ=60) ATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGA < SRR4302534.4533528/94‑1 (MQ=60) ATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGA < SRR4302534.4598441/94‑1 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCGACAAGGATTGGGCACGATAAT > SRR4302534.5648968/1‑94 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAAT < SRR4302534.989077/94‑1 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAAT > SRR4302534.4672181/1‑94 (MQ=60) AGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAAT > SRR4302534.6555313/1‑94 (MQ=60) GGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACTATAATA < SRR4302534.4402320/94‑1 (MQ=60) GGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATA > SRR4302534.4743861/1‑94 (MQ=60) TCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATC > SRR4302534.5066301/1‑94 (MQ=60) GCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGA > SRR4302534.2765132/1‑94 (MQ=60) CAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGTGTAAGGACCCACAAGGATGGCGCACGATAATATCGAT > SRR4302534.2068815/1‑94 (MQ=60) CAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGAT > SRR4302534.1794799/1‑94 (MQ=60) CAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGAT < SRR4302534.664864/94‑1 (MQ=60) AGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATAT < SRR4302534.1322761/94‑1 (MQ=60) AGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATAT > SRR4302534.3158657/1‑94 (MQ=60) CCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTC > SRR4302534.5299183/1‑94 (MQ=60) CCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTC < SRR4302534.2410909/94‑1 (MQ=60) CAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCT < SRR4302534.3423124/94‑1 (MQ=60) CAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCT < SRR4302534.4270215/94‑1 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG < SRR4302534.3782194/94‑1 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG > SRR4302534.4092194/1‑94 (MQ=60) AGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTG < SRR4302534.4599017/94‑1 (MQ=60) GAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGT > SRR4302534.1588242/1‑94 (MQ=60) AGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTG < SRR4302534.3868072/94‑1 (MQ=60) GGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGG < SRR4302534.2020201/94‑1 (MQ=60) GAAAAGGCTCAGCGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTG < SRR4302534.622325/94‑1 (MQ=60) GAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTG < SRR4302534.6625416/94‑1 (MQ=60) AAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGG > SRR4302534.3049564/1‑94 (MQ=60) AGGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302534.15825/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302534.1376935/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302534.3896540/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302534.4341064/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAT < SRR4302534.4856856/94‑1 (MQ=60) AAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGAG > SRR4302534.817173/1‑94 (MQ=60) AGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATG > SRR4302534.3407974/1‑94 (MQ=60) GGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGA < SRR4302534.5136597/94‑1 (MQ=60) GGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGA > SRR4302534.1727035/1‑94 (MQ=60) GGCTCAACGTTCACCCTCTGGCTCCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGA < SRR4302534.170752/94‑1 (MQ=60) GCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGAT > SRR4302534.5901326/1‑94 (MQ=60) CTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATG < SRR4302534.278917/94‑1 (MQ=60) TCAACGTTCGCCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGA < SRR4302534.1390011/94‑1 (MQ=60) TCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGA < SRR4302534.2800206/94‑1 (MQ=60) CAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGAC < SRR4302534.4551304/94‑1 (MQ=60) AACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACA < SRR4302534.1520725/94‑1 (MQ=60) AACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACA < SRR4302534.4483869/94‑1 (MQ=60) AACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACA > SRR4302534.404902/1‑94 (MQ=60) ctttccccctgtcgctaCCGGTCAATATTACGCGTAAGGCCCCTCAAGGATGGCGCAGGCTAATATCGATATTGTGGTGGTGGATGAGGACATT < SRR4302534.3335952/77‑1 (MQ=45) CGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATT < SRR4302534.5308663/94‑1 (MQ=60) GTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTA > SRR4302534.6389542/1‑94 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302534.5959583/94‑1 (MQ=60) TTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAG < SRR4302534.1703741/94‑1 (MQ=60) TTCACCCTCTGGCTCCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCTATATTCTGGTGGTGGATGATGACATTAG < SRR4302534.3978047/94‑1 (MQ=60) TCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGC > SRR4302534.4329374/1‑94 (MQ=60) CACCCTCTGGCTTCCGGTCAATATTACGCTTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCC < SRR4302534.6439350/94‑1 (MQ=60) CACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCC > SRR4302534.4701682/1‑94 (MQ=60) CACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCC < SRR4302534.468849/94‑1 (MQ=60) CACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGCGGATGATGACATTAGCA > SRR4302534.6100248/1‑94 (MQ=60) TCCCTCTGGCTTCCGGTCGATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCA < SRR4302534.5107289/94‑1 (MQ=60) ACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCA > SRR4302534.2217310/1‑94 (MQ=60) CCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAC > SRR4302534.3378502/1‑94 (MQ=60) CCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAC < SRR4302534.3057175/94‑1 (MQ=60) CCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT < SRR4302534.3950441/94‑1 (MQ=60) CCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACT < SRR4302534.4543556/94‑1 (MQ=60) CTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTG > SRR4302534.4002863/1‑94 (MQ=60) CTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTG > SRR4302534.2280068/1‑94 (MQ=60) CTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTG > SRR4302534.441282/1‑94 (MQ=60) CTCTGGCTCCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTG < SRR4302534.4748190/94‑1 (MQ=60) TCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGC > SRR4302534.4547431/1‑94 (MQ=60) CTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA > SRR4302534.6322977/1‑94 (MQ=60) CTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA > SRR4302534.4893936/1‑94 (MQ=60) CTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCA > SRR4302534.1626876/1‑94 (MQ=60) TGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCAC > SRR4302534.2725245/1‑94 (MQ=60) TGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCAC < SRR4302534.3134775/94‑1 (MQ=60) GGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACT > SRR4302534.4175408/1‑94 (MQ=60) GCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTA > SRR4302534.3530896/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302534.2560541/1‑94 (MQ=60) CTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAT > SRR4302534.6509281/1‑94 (MQ=60) TCCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTT < SRR4302534.5242122/94‑1 (MQ=60) CCGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTT < SRR4302534.5617690/94‑1 (MQ=60) CCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTT < SRR4302534.4746238/94‑1 (MQ=60) CGGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTG < SRR4302534.3730454/94‑1 (MQ=60) GGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGCGGATGATGACATTCGCCACTGCACTATTTTGC > SRR4302534.2142858/1‑94 (MQ=60) GGTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATACTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGC > SRR4302534.2579702/1‑94 (MQ=60) GTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCTCTGCACTATTTTGCA < SRR4302534.1522292/94‑1 (MQ=60) GTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCA > SRR4302534.1962271/1‑94 (MQ=60) GTCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCA < SRR4302534.797974/94‑1 (MQ=60) TCAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAG > SRR4302534.536418/1‑94 (MQ=60) CAATATTCCGCGTAAGGACCCCCAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATAACATTAGCCCCTGCAATATTTTGCAGG < SRR4302534.6342510/94‑1 (MQ=60) CAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGG > SRR4302534.2647560/1‑94 (MQ=60) CAATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGG > SRR4302534.798141/1‑94 (MQ=60) AATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGC > SRR4302534.4642808/1‑94 (MQ=60) AATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGC > SRR4302534.6333116/1‑94 (MQ=60) AATATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGC > SRR4302534.5126194/1‑94 (MQ=60) TATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATGTCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTT < SRR4302534.1500900/94‑1 (MQ=60) TATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTT > SRR4302534.4826821/1‑94 (MQ=60) ATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTT < SRR4302534.2589772/94‑1 (MQ=60) ATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTT < SRR4302534.2476320/94‑1 (MQ=60) ATTACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTT < SRR4302534.4810881/94‑1 (MQ=60) TTACCCGTAAGGACCCACAAGGATGGCGCAATATAATATCGCTATTCTCGAGGTGGATGATGACATTAGCCCCTTCACTATTTTACAGGATTTA > SRR4302534.2769837/1‑94 (MQ=32) TACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC < SRR4302534.3363025/94‑1 (MQ=60) TACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC < SRR4302534.3857934/94‑1 (MQ=60) TACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC > SRR4302534.3325751/1‑94 (MQ=60) TACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC < SRR4302534.6026567/94‑1 (MQ=60) TAAGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAC < SRR4302534.3313552/94‑1 (MQ=60) TCGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACT < SRR4302534.1690331/94‑1 (MQ=60) ACGCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACT < SRR4302534.352116/94‑1 (MQ=60) GCGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGC < SRR4302534.5118506/94‑1 (MQ=60) CGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG < SRR4302534.5077828/94‑1 (MQ=60) CGTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG > SRR4302534.2135525/1‑94 (MQ=60) GTAAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGC > SRR4302534.1381597/1‑94 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG > SRR4302534.6611199/1‑94 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG > SRR4302534.1477221/1‑94 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG > SRR4302534.1921302/1‑94 (MQ=60) AAGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGG > SRR4302534.5462388/1‑94 (MQ=60) AGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGC > SRR4302534.3778717/1‑94 (MQ=60) AGGACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGC > SRR4302534.6034289/1‑94 (MQ=60) ACCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGG < SRR4302534.1661480/94‑1 (MQ=60) CCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGG < SRR4302534.5123295/94‑1 (MQ=60) CCCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGG > SRR4302534.3686749/1‑94 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG > SRR4302534.3414022/1‑94 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG > SRR4302534.4324172/1‑94 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG < SRR4302534.652541/94‑1 (MQ=60) CCACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGG > SRR4302534.5754295/1‑94 (MQ=60) CACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGC < SRR4302534.3157771/94‑1 (MQ=60) CACAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGC > SRR4302534.4921112/1‑94 (MQ=60) CAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTA < SRR4302534.6245353/94‑1 (MQ=60) CAAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTA < SRR4302534.981680/94‑1 (MQ=60) AAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTAT > SRR4302534.803366/1‑94 (MQ=60) AAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTAT > SRR4302534.5369265/1‑94 (MQ=60) AAGGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTAT > SRR4302534.1883238/1‑94 (MQ=60) AGGATGGCGCACGATAATATCGATATTCTGGGGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATA > SRR4302534.4297197/1‑94 (MQ=60) GGATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAA < SRR4302534.2966647/94‑1 (MQ=60) GATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC > SRR4302534.5815228/1‑94 (MQ=60) GATGGCGCACGATAATATCGATATTCTGGTAGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAAC < SRR4302534.4477074/94‑1 (MQ=60) ATGGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACG > SRR4302534.3228711/1‑94 (MQ=60) GGCGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGGC < SRR4302534.3798832/94‑1 (MQ=60) | TGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCGCGGCTGGGGCTATAACGTC > NC_000913/4200808‑4200993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |