Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,490,864 |
T→C |
Q19R (CAG→CGG) |
idnO ← |
5‑keto‑D‑gluconate 5‑reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,490,864 | 0 | T | C | 98.4%
| 1021.8
/ 2.6
| 307 | Q19R (CAG→CGG) | idnO | 5‑keto‑D‑gluconate 5‑reductase |
| Reads supporting (aligned to +/- strand): ref base T (4/1); new base C (128/174); total (132/175) |
| Fisher's exact test for biased strand distribution p-value = 1.69e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
Only 100 of 336 total aligned reads displayed.
GCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAA > NC_000913/4490774‑4490953
|
gCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCcgt < 1:5767586/93‑1 (MQ=255)
gCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCcgt > 1:2943434/1‑93 (MQ=255)
cAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCcgtg < 1:4774540/93‑1 (MQ=255)
cAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCcgtg > 1:5201932/1‑93 (MQ=255)
aaGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGc < 2:862620/93‑1 (MQ=255)
aGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCt < 2:5124826/93‑1 (MQ=255)
gTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCACGTGCTg > 1:7434938/1‑93 (MQ=255)
cTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAc > 2:3708505/1‑93 (MQ=255)
tGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAcc < 2:7500552/93‑1 (MQ=255)
tGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAcc < 1:2734901/93‑1 (MQ=255)
gcgcGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCg > 2:156526/1‑93 (MQ=255)
cgcgTTCGGCAGTAATATCATTCATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAACAGCCACTGCCCCGTGCTGAACCgg > 2:5204688/1‑93 (MQ=255)
cgTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTa < 2:85114/93‑1 (MQ=255)
cGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCa > 2:3230966/1‑93 (MQ=255)
ggCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCaa > 1:6254002/1‑93 (MQ=255)
gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCTGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAg > 1:8648339/1‑93 (MQ=255)
gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAg < 2:4172662/93‑1 (MQ=255)
cAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGa < 2:5288945/93‑1 (MQ=255)
cAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGa > 2:4792722/1‑93 (MQ=255)
aGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGat > 2:1434123/1‑93 (MQ=255)
gTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGata > 1:3078651/1‑93 (MQ=255)
gTAATATCATGAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGata < 1:2515506/93‑1 (MQ=255)
tAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGatat < 2:2562794/93‑1 (MQ=255)
aaTATGATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAtt > 2:8743352/1‑93 (MQ=255)
aaTATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAtt > 2:6974462/1‑93 (MQ=255)
atatCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAttt < 2:2726205/93‑1 (MQ=255)
atatCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAttt < 2:6040818/93‑1 (MQ=255)
atCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAttttt < 2:3403246/93‑1 (MQ=255)
atCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAttttt < 1:5685830/93‑1 (MQ=255)
tCATTAATAATTATTTGTGCGCCATATTTACCCAGGTCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAtttttt > 2:763996/1‑93 (MQ=255)
tCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAtttttt > 2:4862342/1‑93 (MQ=255)
cATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTc < 1:3530222/93‑1 (MQ=255)
aTTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTTCTTAACCGGTAATCAAGATATTTTTTcc < 2:1109682/93‑1 (MQ=255)
aTTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTcc < 1:3372781/93‑1 (MQ=255)
ttAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCt < 1:2171091/93‑1 (MQ=255)
ataatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGcc < 2:303246/93‑1 (MQ=255)
taatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCa < 1:8140998/93‑1 (MQ=255)
taatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCa > 2:6267175/1‑93 (MQ=255)
taatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCa < 1:375521/93‑1 (MQ=255)
aatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAg < 1:7572406/93‑1 (MQ=255)
attattTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGt < 2:1914089/93‑1 (MQ=255)
attattTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGt > 2:1305466/1‑93 (MQ=255)
ttattTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTg < 1:1460710/93‑1 (MQ=255)
ttttGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGaa < 2:3604369/92‑1 (MQ=255)
tgtgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAAt < 2:5769881/93‑1 (MQ=255)
gtgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATa < 1:1206652/93‑1 (MQ=255)
gtgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATa < 1:4531838/93‑1 (MQ=255)
gtgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATa < 1:1061522/93‑1 (MQ=255)
gtgCGCAATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATa < 2:7850880/93‑1 (MQ=255)
gcgcCATATTTTCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGa < 1:7048599/93‑1 (MQ=255)
gcgcCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGa < 2:1526171/93‑1 (MQ=255)
gcgcAATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGa < 2:4356244/93‑1 (MQ=255)
ggcCACATTTACCAAGGCGGGTTGCCAGTAAAAACCCAATGCCCCGTTCTGAACCGGTAATAAAGATTTTTTTTCCTGCCAGTGAAAATAGAt < 1:4937467/92‑1 (MQ=255)
cgcCATATTTACCCAGTCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGAt < 2:2290356/93‑1 (MQ=255)
cgcCATATTTACCCAGCCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGAt < 2:5491770/93‑1 (MQ=255)
gcCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATc < 2:4966666/93‑1 (MQ=255)
cATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGt < 1:4317213/93‑1 (MQ=255)
cATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGt < 1:5535617/93‑1 (MQ=255)
tatTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTc < 1:3593311/93‑1 (MQ=255)
atTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCa < 1:440154/93‑1 (MQ=255)
ttACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAtt < 2:3769362/93‑1 (MQ=255)
ttACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAtt > 2:8150734/1‑93 (MQ=255)
tACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTg < 1:2801235/93‑1 (MQ=255)
tACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTg < 1:5314642/93‑1 (MQ=255)
cccAGGCCGGCTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGta > 2:6154972/1‑93 (MQ=255)
aGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtatta > 2:3117376/1‑93 (MQ=255)
aGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtatta < 1:2659568/93‑1 (MQ=255)
ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattat > 2:5670347/1‑93 (MQ=255)
ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattat > 2:5928976/1‑93 (MQ=255)
ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattat > 1:8481854/1‑93 (MQ=255)
gCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTattatt > 1:3817616/1‑93 (MQ=255)
ggTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCt > 1:4013316/1‑93 (MQ=255)
ggTTGCCAGTAAAAAGCAAATGCCCCGTGCTGAACCGGTAATAAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCt < 2:7346683/93‑1 (MQ=255)
gTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGTCAGTGAAAATTGATCGTTCATTGTattatttttt > 2:4668713/1‑89 (MQ=255)
gTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtt < 1:1918297/93‑1 (MQ=255)
gCCAGTAAAAAGCCAATTCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttat < 1:872602/93‑1 (MQ=255)
gCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttat < 2:6406843/93‑1 (MQ=255)
ccAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttatt < 1:6499652/93‑1 (MQ=255)
aGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttattta > 1:7964865/1‑93 (MQ=255)
aGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttattta < 1:8261862/93‑1 (MQ=255)
aGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttattta > 2:8039111/1‑93 (MQ=255)
aGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttattta < 1:6165996/93‑1 (MQ=255)
gTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTttatttat < 2:1772898/93‑1 (MQ=255)
atAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTttatttat < 1:7639850/92‑1 (MQ=255)
aaaaaTCCAATGCCCCGTGCTGACCCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtct < 2:4113686/93‑1 (MQ=255)
aaaaaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtct < 2:6615704/93‑1 (MQ=255)
aaaaaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtct > 1:2312113/1‑93 (MQ=255)
aaaaaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtct < 2:4000083/93‑1 (MQ=255)
aaaaGCGAATGCCCAGTCCTGAACCGGGAATCAAGATATTTTTTGCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtctc > 2:6481785/1‑93 (MQ=255)
aaaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATctct < 2:1079602/93‑1 (MQ=255)
aaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCtt < 2:7085078/93‑1 (MQ=255)
aGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTa < 1:8132346/93‑1 (MQ=255)
aGCCAATGCCCAGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTa < 1:1830248/93‑1 (MQ=255)
gCCAATGCCCCGTGCTGAACCGGTGATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAg < 1:7813768/93‑1 (MQ=255)
ccAATGGCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGa < 1:1692067/93‑1 (MQ=255)
cAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGaa < 2:7300492/93‑1 (MQ=255)
cAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGaa < 1:6704692/93‑1 (MQ=255)
tGCCCTGTGATGAACCGGTAATCAAGACATTTTTTCCTGCAAGTGAAAATAGATCGGTCATTGTCTTCTTCCTTTATTTATCTCTTAGaagaa > 1:689088/1‑90 (MQ=255)
tGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAAc < 2:211597/93‑1 (MQ=255)
ccccGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGACAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAAcca > 1:50983/1‑91 (MQ=255)
|
GCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAA > NC_000913/4490774‑4490953
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTG > NC_000913/4490771‑4490957
|
ACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCC < SRR4302541.8825393/94‑1 (MQ=60)
ACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCC < SRR4302541.1815428/94‑1 (MQ=60)
AGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGT > SRR4302541.2973032/1‑94 (MQ=60)
AGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGT > SRR4302541.2973033/1‑94 (MQ=60)
AGCAAGTTCTGCGCGTTCGGCAGAAATATCATTAATCATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGT > SRR4302541.5256211/1‑94 (MQ=60)
GCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTG < SRR4302541.5826279/94‑1 (MQ=60)
GCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTG > SRR4302541.5255504/1‑94 (MQ=60)
GCAAGTTCTGCGCGTGCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTG < SRR4302541.2345776/94‑1 (MQ=60)
CAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGC > SRR4302541.4803229/1‑94 (MQ=60)
CAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGC < SRR4302541.4823289/94‑1 (MQ=60)
AAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCTCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCT < SRR4302541.3587846/94‑1 (MQ=60)
AAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCT < SRR4302541.248140/94‑1 (MQ=60)
AGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTG > SRR4302541.3278553/1‑94 (MQ=60)
AGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTG > SRR4302541.6958137/1‑94 (MQ=60)
AGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCACGTGCTG > SRR4302541.7514418/1‑94 (MQ=60)
TCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAC > SRR4302541.1812861/1‑94 (MQ=60)
CTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACC < SRR4302541.4430357/94‑1 (MQ=60)
CTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACC < SRR4302541.661709/94‑1 (MQ=60)
CTGCGCGTTCGGCAGTAATATAATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACC < SRR4302541.5690585/94‑1 (MQ=60)
TGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTGCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCG < SRR4302541.4279871/94‑1 (MQ=60)
TGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCG < SRR4302541.661698/94‑1 (MQ=60)
TGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCG < SRR4302541.8227667/94‑1 (MQ=60)
TGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCG > SRR4302541.2672309/1‑94 (MQ=60)
TGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCG < SRR4302541.2762297/94‑1 (MQ=60)
CGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGT < SRR4302541.5518299/94‑1 (MQ=60)
GCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTA < SRR4302541.889699/94‑1 (MQ=60)
TCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCA < SRR4302541.3436153/94‑1 (MQ=60)
TCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCA > SRR4302541.2776015/1‑94 (MQ=60)
TCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCA > SRR4302541.3061302/1‑94 (MQ=60)
CGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAA > SRR4302541.1968558/1‑94 (MQ=60)
CGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAA > SRR4302541.6317884/1‑94 (MQ=60)
GGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCTGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAG > SRR4302541.8740947/1‑94 (MQ=60)
GGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAG > SRR4302541.2903585/1‑94 (MQ=60)
GGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAG > SRR4302541.7563363/1‑94 (MQ=60)
GCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGA < SRR4302541.3821102/94‑1 (MQ=60)
GCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGA > SRR4302541.2652920/1‑94 (MQ=60)
AGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATA > SRR4302541.3109895/1‑94 (MQ=60)
AGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATA < SRR4302541.4400908/94‑1 (MQ=60)
AGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATA > SRR4302541.8224570/1‑94 (MQ=60)
GTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAT < SRR4302541.3020169/94‑1 (MQ=60)
GTAATATCATGAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAT < SRR4302541.2540828/94‑1 (MQ=60)
TAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATT > SRR4302541.4737093/1‑94 (MQ=60)
ATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTT > SRR4302541.7653564/1‑94 (MQ=60)
TATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTT < SRR4302541.5937317/94‑1 (MQ=60)
ATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTT < SRR4302541.5743841/94‑1 (MQ=60)
ATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTT > SRR4302541.769526/1‑94 (MQ=60)
CATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCC > SRR4302541.2879982/1‑94 (MQ=60)
CATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCC < SRR4302541.3565780/94‑1 (MQ=60)
ATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCT < SRR4302541.4530163/94‑1 (MQ=60)
ATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCT < SRR4302541.8852132/94‑1 (MQ=60)
ATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCT < SRR4302541.2719544/94‑1 (MQ=60)
ATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCT < SRR4302541.3406416/94‑1 (MQ=60)
TTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTG > SRR4302541.4873803/1‑94 (MQ=60)
TTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTG < SRR4302541.2192085/94‑1 (MQ=60)
AATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCC > SRR4302541.5765368/1‑94 (MQ=60)
TAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAG < SRR4302541.8230064/94‑1 (MQ=60)
TAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAG < SRR4302541.378979/94‑1 (MQ=60)
TAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAG < SRR4302541.5021040/94‑1 (MQ=60)
AATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGT > SRR4302541.5155891/1‑94 (MQ=60)
AATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGT < SRR4302541.7653327/94‑1 (MQ=60)
AATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGT < SRR4302541.5858875/94‑1 (MQ=60)
TTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGA < SRR4302541.1474992/94‑1 (MQ=60)
TTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGA < SRR4302541.4259020/94‑1 (MQ=60)
ATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAA > SRR4302541.1306636/1‑94 (MQ=60)
ATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAA > SRR4302541.468090/1‑94 (MQ=60)
TTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAA < SRR4302541.5063945/94‑1 (MQ=60)
TTGTTCCCCATATTTACCCAGGCCGGTTTCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAAT < SRR4302541.1923449/94‑1 (MQ=60)
GTGCGCCATATTTACCCGGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG < SRR4302541.3613739/94‑1 (MQ=60)
GTGCGCCATATTTACCCAGGCCGGTTTCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG < SRR4302541.2800160/94‑1 (MQ=60)
GTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG < SRR4302541.4577606/94‑1 (MQ=60)
GTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG < SRR4302541.1071386/94‑1 (MQ=60)
GTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG < SRR4302541.1534919/94‑1 (MQ=60)
GTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG < SRR4302541.3520694/94‑1 (MQ=60)
GTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG < SRR4302541.1218386/94‑1 (MQ=60)
GCGCCATATTTTCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGAT < SRR4302541.7123563/94‑1 (MQ=60)
GCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGAT < SRR4302541.4566954/94‑1 (MQ=60)
GGCCACATTTACCAAGGCGGGTTGCCAGTAAAAACCCAATGCCCCGTTCTGAACCGGTAATAAAGATTTTTTTTCCTGCCAGTGAAAATAGATC < SRR4302541.4987854/94‑1 (MQ=60)
CGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATC > SRR4302541.5731708/1‑94 (MQ=60)
CGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATC > SRR4302541.6277993/1‑94 (MQ=60)
CGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATC < SRR4302541.2082957/94‑1 (MQ=60)
GCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCG < SRR4302541.5371368/94‑1 (MQ=60)
GCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCG > SRR4302541.5986542/1‑94 (MQ=60)
CCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGT < SRR4302541.4976711/94‑1 (MQ=60)
CCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCATGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGT > SRR4302541.7373327/1‑94 (MQ=60)
CATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTT < SRR4302541.5592288/94‑1 (MQ=60)
CATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTT < SRR4302541.4360321/94‑1 (MQ=60)
ATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTC > SRR4302541.7936595/1‑94 (MQ=60)
ATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTC > SRR4302541.3402486/1‑94 (MQ=60)
ATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTC < SRR4302541.8495302/94‑1 (MQ=60)
TATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCT > SRR4302541.2134231/1‑94 (MQ=60)
TATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCA < SRR4302541.8764264/94‑1 (MQ=60)
TATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCA < SRR4302541.3629743/94‑1 (MQ=60)
TATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCA < SRR4302541.3629978/94‑1 (MQ=60)
ATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAT > SRR4302541.7297064/1‑94 (MQ=60)
ATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAT < SRR4302541.3834079/94‑1 (MQ=60)
ATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAT < SRR4302541.444297/94‑1 (MQ=60)
TTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATT > SRR4302541.1857874/1‑94 (MQ=60)
TACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGT < SRR4302541.2829558/94‑1 (MQ=60)
TACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGT < SRR4302541.5369351/94‑1 (MQ=60)
tccccggcgcGTTGCCAGTAAAAAGCCAATGCCCCGTGGTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTA < SRR4302541.5192294/84‑1 (MQ=60)
ACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTA < SRR4302541.7914931/94‑1 (MQ=60)
CCCAGGCCGGTTGCCAGTAGAAAGGCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTGTGCTGCCAGTGAAAATAGATCGTTCATTGTAT > SRR4302541.1479769/1‑94 (MQ=60)
CCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTAT > SRR4302541.6570513/1‑94 (MQ=60)
CAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTA < SRR4302541.8791132/94‑1 (MQ=60)
CAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCGGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTA < SRR4302541.2219770/94‑1 (MQ=60)
AGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTAT > SRR4302541.3871481/1‑94 (MQ=60)
AGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTAT > SRR4302541.8212933/1‑94 (MQ=60)
AGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTAT < SRR4302541.2686015/94‑1 (MQ=60)
AGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTAT > SRR4302541.6300878/1‑94 (MQ=60)
AGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTAT > SRR4302541.8573282/1‑94 (MQ=60)
GGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATT < SRR4302541.8209103/94‑1 (MQ=60)
GGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATT > SRR4302541.3856069/1‑94 (MQ=60)
GGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATT < SRR4302541.8447343/94‑1 (MQ=60)
GCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTC < SRR4302541.2746248/94‑1 (MQ=60)
CCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCC < SRR4302541.8903971/94‑1 (MQ=60)
CCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCC > SRR4302541.4002563/1‑94 (MQ=60)
CGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGTTATTTTTTCCTGCCAGTGACAATAGATCGTTCATTGTATTATTCCT > SRR4302541.4121878/1‑94 (MQ=60)
CGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCT > SRR4302541.1467917/1‑94 (MQ=60)
CGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCT > SRR4302541.4053004/1‑94 (MQ=60)
CGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCT < SRR4302541.5219432/94‑1 (MQ=60)
GGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTT > SRR4302541.7020928/1‑94 (MQ=60)
GGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTT < SRR4302541.4144592/94‑1 (MQ=60)
GGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTT > SRR4302541.7561962/1‑94 (MQ=60)
GTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTT < SRR4302541.1936754/94‑1 (MQ=60)
GTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTT < SRR4302541.2571148/94‑1 (MQ=60)
GTTGCCAGAAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTGCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTT < SRR4302541.8347829/94‑1 (MQ=60)
TTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTA > SRR4302541.1095376/1‑94 (MQ=60)
TGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTAT < SRR4302541.7653826/94‑1 (MQ=60)
GCCAGTAAAAAGCCAATTCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATT < SRR4302541.880558/94‑1 (MQ=60)
CCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTT < SRR4302541.8056614/94‑1 (MQ=60)
CCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTT < SRR4302541.6565934/94‑1 (MQ=60)
CCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTT > SRR4302541.6552171/1‑94 (MQ=60)
CCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTT > SRR4302541.5590710/1‑94 (MQ=60)
CAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTA > SRR4302541.6796030/1‑94 (MQ=60)
CAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTA > SRR4302541.8052643/1‑94 (MQ=60)
AGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAT < SRR4302541.6373841/94‑1 (MQ=60)
AGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAT < SRR4302541.157697/94‑1 (MQ=60)
AGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAT < SRR4302541.6228999/94‑1 (MQ=60)
AGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAT < SRR4302541.8351813/94‑1 (MQ=60)
GTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATC < SRR4302541.2252736/94‑1 (MQ=60)
ATAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATC < SRR4302541.7721309/94‑1 (MQ=60)
TAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCT < SRR4302541.7834952/94‑1 (MQ=60)
TAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCT > SRR4302541.2334541/1‑94 (MQ=60)
AAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCT < SRR4302541.1839067/94‑1 (MQ=60)
ACGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTA < SRR4302541.8380884/94‑1 (MQ=60)
AGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAG < SRR4302541.8255808/94‑1 (MQ=60)
AGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAG < SRR4302541.531143/94‑1 (MQ=60)
AGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAG < SRR4302541.8221358/94‑1 (MQ=60)
AGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAG > SRR4302541.5757852/1‑94 (MQ=60)
AGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAG > SRR4302541.7124677/1‑94 (MQ=60)
AGCCAATGCCCAGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAG < SRR4302541.1847997/94‑1 (MQ=60)
GCCAATGCCCCGTGCTGAACCGGTGATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGA < SRR4302541.7898292/94‑1 (MQ=60)
GCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGA > SRR4302541.7079440/1‑94 (MQ=60)
CCAATGGCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAA < SRR4302541.1708678/94‑1 (MQ=60)
CCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAA > SRR4302541.858148/1‑94 (MQ=60)
CCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAA < SRR4302541.8597314/94‑1 (MQ=60)
CAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAA < SRR4302541.6775241/94‑1 (MQ=60)
AATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAA > SRR4302541.3156423/1‑94 (MQ=60)
ATGCCCTGTGATGAACCGGTAATCAAGACATTTTTTCCTGCAAGTGAAAATAGATCGGTCATTGTCTTCTTCCTTTATTTATCTCTTAGAAgaa > SRR4302541.695572/1‑91 (MQ=60)
ATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAAC < SRR4302541.5022391/94‑1 (MQ=60)
TGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACA > SRR4302541.3709106/1‑94 (MQ=60)
TGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACA < SRR4302541.117405/94‑1 (MQ=60)
TGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACA > SRR4302541.3709107/1‑94 (MQ=60)
GCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGACAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACCA > SRR4302541.51380/1‑94 (MQ=60)
CCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAG < SRR4302541.7762775/94‑1 (MQ=60)
CCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAG > SRR4302541.7287631/1‑94 (MQ=60)
CCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGC > SRR4302541.8062414/1‑94 (MQ=60)
CCGTGCTGACCCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCT < SRR4302541.4036008/94‑1 (MQ=60)
CCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCT < SRR4302541.8703884/94‑1 (MQ=60)
CCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCT < SRR4302541.8740139/94‑1 (MQ=60)
CCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCT < SRR4302541.7275333/94‑1 (MQ=60)
CCGTGCTGAACCGGCAATCAAGATATTTGTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCT < SRR4302541.8703883/94‑1 (MQ=60)
CGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTG < SRR4302541.8356693/94‑1 (MQ=60)
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ACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTG > NC_000913/4490771‑4490957
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
