Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,490,864 T→C Q19R (CAG→CGG)  idnO ← 5‑keto‑D‑gluconate 5‑reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,490,8640TC100.0% 657.1 / NA 187Q19R (CAG→CGG) idnO5‑keto‑D‑gluconate 5‑reductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (83/104);  total (83/104)

Only 100 of 194 total aligned reads displayed.

AAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAA  >  NC_000913/4490776‑4490953
                                                                                        |                                                                                         
aaGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGc                                                                                       <  1:3079186/93‑1 (MQ=255)
aaGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGc                                                                                       >  2:2485514/1‑93 (MQ=255)
aaGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGc                                                                                       <  1:6043215/93‑1 (MQ=255)
 aGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCt                                                                                      <  1:6158052/93‑1 (MQ=255)
 aGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCt                                                                                      >  1:5363400/1‑93 (MQ=255)
 aGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCt                                                                                      >  2:1356793/1‑93 (MQ=255)
     cTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAc                                                                                  <  1:4203233/93‑1 (MQ=255)
      tGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAcc                                                                                 <  2:3568031/93‑1 (MQ=255)
      tGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAcc                                                                                 <  1:235671/93‑1 (MQ=255)
      tGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAAcc                                                                                 >  1:6370320/1‑93 (MQ=255)
       gcgcGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCg                                                                                <  1:3825922/93‑1 (MQ=255)
        cgcgTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCgg                                                                               >  1:1299693/1‑93 (MQ=255)
          cgTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTa                                                                             <  2:1691747/93‑1 (MQ=255)
           gTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTaa                                                                            >  1:706454/1‑93 (MQ=255)
             tCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATc                                                                          <  1:3982859/93‑1 (MQ=255)
                gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAg                                                                       >  1:4313658/1‑93 (MQ=255)
                gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAg                                                                       >  2:4220860/1‑93 (MQ=255)
                 cAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGa                                                                      <  2:5235067/93‑1 (MQ=255)
                 cAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGa                                                                      <  1:1022506/93‑1 (MQ=255)
                 cAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGa                                                                      <  2:6146909/93‑1 (MQ=255)
                  aGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGat                                                                     >  1:4231187/1‑93 (MQ=255)
                     aaTATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAtt                                                                  >  2:5344337/1‑93 (MQ=255)
                           aTTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTcc                                                            >  2:1443759/1‑93 (MQ=255)
                           aTTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTcc                                                            >  2:100843/1‑93 (MQ=255)
                            ttAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCt                                                           <  1:4138788/93‑1 (MQ=255)
                            ttAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCt                                                           <  2:4167204/93‑1 (MQ=255)
                               ataatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGcc                                                        <  1:248372/93‑1 (MQ=255)
                                taatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCa                                                       >  2:84221/1‑93 (MQ=255)
                                 aatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAg                                                      <  1:1448819/93‑1 (MQ=255)
                                 aatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAg                                                      <  2:2410608/93‑1 (MQ=255)
                                 aatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAg                                                      >  2:322561/1‑93 (MQ=255)
                                   ttattTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTg                                                    <  2:4382387/93‑1 (MQ=255)
                                     attTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGaa                                                  >  2:6119072/1‑93 (MQ=255)
                                     attTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGaa                                                  >  2:2987721/1‑93 (MQ=255)
                                     attTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGaa                                                  >  1:2574369/1‑93 (MQ=255)
                                      tttGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGaaa                                                 >  2:4459378/1‑93 (MQ=255)
                                        tgtgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAAt                                               <  2:5183029/93‑1 (MQ=255)
                                         ttgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATa                                              <  2:3978328/92‑1 (MQ=255)
                                          tgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAg                                             <  1:6422612/93‑1 (MQ=255)
                                           gcgcCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGa                                            >  2:3761320/1‑93 (MQ=255)
                                           gcgcCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGa                                            <  1:2174230/93‑1 (MQ=255)
                                            cgcCATATTTACCCAGGCCGTTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAATATATTTTTTCCTGCCAGTGAAAATAGAt                                           <  1:3324779/93‑1 (MQ=255)
                                               cATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGt                                        <  2:3860633/93‑1 (MQ=255)
                                                atatTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGtt                                       <  1:4781287/93‑1 (MQ=255)
                                                 tatTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTc                                      <  2:3145013/93‑1 (MQ=255)
                                                 tatTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTc                                      >  2:513247/1‑93 (MQ=255)
                                                 tatTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTc                                      >  2:1909702/1‑93 (MQ=255)
                                                  atTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCa                                     >  1:5955262/1‑93 (MQ=255)
                                                  atTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCa                                     <  2:499616/93‑1 (MQ=255)
                                                  atTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCa                                     <  1:2817464/93‑1 (MQ=255)
                                                   tttACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAt                                    <  1:491103/93‑1 (MQ=255)
                                                   tttACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAt                                    >  2:5667645/1‑93 (MQ=255)
                                                     tACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTg                                  <  1:1032181/93‑1 (MQ=255)
                                                      aCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGt                                 <  1:5647799/93‑1 (MQ=255)
                                                      aCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGt                                 >  1:2891954/1‑93 (MQ=255)
                                                      aCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGt                                 >  1:4531855/1‑93 (MQ=255)
                                                       cccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGta                                <  1:4397607/93‑1 (MQ=255)
                                                       cccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGta                                >  2:1590186/1‑93 (MQ=255)
                                                       cccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGta                                >  2:5796197/1‑93 (MQ=255)
                                                       cccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGta                                >  2:1227101/1‑93 (MQ=255)
                                                        ccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtat                               >  2:551821/1‑93 (MQ=255)
                                                        ccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtat                               >  2:6338962/1‑93 (MQ=255)
                                                        ccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtat                               >  1:5187596/1‑93 (MQ=255)
                                                         cAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtatt                              <  2:92672/93‑1 (MQ=255)
                                                         cAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtatt                              <  2:2676528/93‑1 (MQ=255)
                                                          aGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattt                             >  2:330578/1‑92 (MQ=255)
                                                           ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattat                            >  1:157491/1‑93 (MQ=255)
                                                           ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattat                            >  1:3589152/1‑93 (MQ=255)
                                                           ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattat                            >  2:4940810/1‑93 (MQ=255)
                                                           ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGtattat                            <  2:4747478/93‑1 (MQ=255)
                                                           ggCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGCTCATTGtattat                            >  2:4676173/1‑93 (MQ=255)
                                                            gCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTattatt                           >  2:5971440/1‑93 (MQ=255)
                                                            gCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTattatt                           <  2:2227230/93‑1 (MQ=255)
                                                              cgattGCAAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATTTTTTTTCCTGCCAGTGAAAATAGAGCGTTCATTGTATTATTcc                         <  1:3365373/90‑1 (MQ=255)
                                                              cGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTcc                         <  1:5538741/93‑1 (MQ=255)
                                                              cGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTcc                         >  1:1711276/1‑93 (MQ=255)
                                                              cGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTcc                         >  1:4061117/1‑93 (MQ=255)
                                                              cGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTcc                         <  2:206163/93‑1 (MQ=255)
                                                               ggTTGCCAGTAAAAAGCCAATGCCCCGTGCTGACCCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCt                        <  2:756572/93‑1 (MQ=255)
                                                                  tGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCttta                     >  1:2071378/1‑93 (MQ=255)
                                                                  tGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTCCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCttta                     <  1:1666814/93‑1 (MQ=255)
                                                                   gCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttat                    <  2:3391042/93‑1 (MQ=255)
                                                                   gCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttat                    >  2:2234629/1‑93 (MQ=255)
                                                                   gCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttat                    <  2:5554975/93‑1 (MQ=255)
                                                                     cAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttattt                  <  1:583289/93‑1 (MQ=255)
                                                                      aGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttatttt                 >  1:4705227/1‑92 (MQ=255)
                                                                      aGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCtttattta                 <  2:2580101/93‑1 (MQ=255)
                                                                        tAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtc               <  2:4554893/93‑1 (MQ=255)
                                                                         aaaaaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtct              <  1:3878280/93‑1 (MQ=255)
                                                                          aaaaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtctc             >  1:3686129/1‑93 (MQ=255)
                                                                          aaaaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtctc             <  1:3513219/93‑1 (MQ=255)
                                                                            aaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCtt           >  2:1119026/1‑93 (MQ=255)
                                                                            aaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCtt           >  1:5729820/1‑93 (MQ=255)
                                                                            aaGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCtt           >  1:1348187/1‑93 (MQ=255)
                                                                             aGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTa          >  2:781307/1‑93 (MQ=255)
                                                                              gCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAg         <  2:3060553/93‑1 (MQ=255)
                                                                               ccAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGa        <  2:3517388/93‑1 (MQ=255)
                                                                                 aaTGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGaaa      >  2:6444453/1‑93 (MQ=255)
                                                                                    gCCCCGTGCGGAACCGGTGATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACa   <  1:6123509/93‑1 (MQ=255)
                                                                                     ccccGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACaa  <  2:133372/93‑1 (MQ=255)
                                                                                        |                                                                                         
AAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAA  >  NC_000913/4490776‑4490953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTG  >  NC_000913/4490772‑4490957
                                                                                            |                                                                                             
CAGCAAGTTCTGCGCTTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAATCCAATGCCCCG                                                                                              <  SRR4302534.2993022/94‑1 (MQ=60)
CAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCG                                                                                              <  SRR4302534.5187880/94‑1 (MQ=60)
 AGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGT                                                                                             <  SRR4302534.5935533/94‑1 (MQ=60)
   CAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGC                                                                                           >  SRR4302534.4025892/1‑94 (MQ=60)
    AAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCT                                                                                          <  SRR4302534.6207494/94‑1 (MQ=60)
    AAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCT                                                                                          >  SRR4302534.5507938/1‑94 (MQ=60)
    AAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCT                                                                                          <  SRR4302534.3160080/94‑1 (MQ=60)
     ATTTCTGCGCGTTCGGCAGTAATATCATTAATATTTATTTGTGCGCCATATTTCCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTG                                                                                         <  SRR4302534.2178158/94‑1 (MQ=60)
     AGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTG                                                                                         <  SRR4302534.485211/94‑1 (MQ=60)
     AGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTG                                                                                         <  SRR4302534.6325549/94‑1 (MQ=60)
         CTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACC                                                                                     <  SRR4302534.4316709/94‑1 (MQ=60)
         CTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACC                                                                                     >  SRR4302534.6542315/1‑94 (MQ=60)
         CTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACC                                                                                     >  SRR4302534.6324648/1‑94 (MQ=60)
          TGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCG                                                                                    <  SRR4302534.241840/94‑1 (MQ=60)
           GCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGG                                                                                   >  SRR4302534.1333964/1‑94 (MQ=60)
           GCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGG                                                                                   <  SRR4302534.3928701/94‑1 (MQ=60)
            CGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGT                                                                                  <  SRR4302534.859295/94‑1 (MQ=60)
              CGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAA                                                                                >  SRR4302534.4459067/1‑94 (MQ=60)
              CGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAA                                                                                >  SRR4302534.723794/1‑94 (MQ=60)
                TTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATC                                                                              <  SRR4302534.6162424/94‑1 (MQ=60)
                 TCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCA                                                                             <  SRR4302534.4089448/94‑1 (MQ=60)
                   GGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAG                                                                           >  SRR4302534.4430500/1‑94 (MQ=60)
                   GGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAG                                                                           >  SRR4302534.2710290/1‑94 (MQ=60)
                     CAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGAT                                                                         >  SRR4302534.4345227/1‑94 (MQ=60)
                     CAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGAT                                                                         <  SRR4302534.1048833/94‑1 (MQ=60)
                     CAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGAT                                                                         <  SRR4302534.2366411/94‑1 (MQ=60)
                     CAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGAT                                                                         >  SRR4302534.6438402/1‑94 (MQ=60)
                       GTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAT                                                                       <  SRR4302534.1181202/94‑1 (MQ=60)
                       GTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATAT                                                                       <  SRR4302534.5810277/94‑1 (MQ=60)
                          ATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTT                                                                    <  SRR4302534.1631945/94‑1 (MQ=60)
                            ATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTT                                                                  >  SRR4302534.4558284/1‑94 (MQ=60)
                            ATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTT                                                                  >  SRR4302534.3201155/1‑94 (MQ=60)
                               ATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCT                                                               <  SRR4302534.471000/94‑1 (MQ=60)
                                TTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTG                                                              <  SRR4302534.4250484/94‑1 (MQ=60)
                                TTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTG                                                              <  SRR4302534.4248459/94‑1 (MQ=60)
                                 TAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGC                                                             <  SRR4302534.2641885/94‑1 (MQ=60)
                                 TAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGC                                                             >  SRR4302534.2422328/1‑94 (MQ=60)
                                  AATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCC                                                            <  SRR4302534.3579226/94‑1 (MQ=60)
                                  AATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCC                                                            >  SRR4302534.6104734/1‑94 (MQ=60)
                                   ATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCA                                                           <  SRR4302534.254858/94‑1 (MQ=60)
                                     AATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGT                                                         >  SRR4302534.6238253/1‑94 (MQ=60)
                                     AATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGT                                                         <  SRR4302534.1729320/94‑1 (MQ=60)
                                     AATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGT                                                         <  SRR4302534.1486950/94‑1 (MQ=60)
                                        TATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAA                                                      >  SRR4302534.2642573/1‑94 (MQ=60)
                                         ATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAA                                                     >  SRR4302534.3892810/1‑94 (MQ=60)
                                             GTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAG                                                 <  SRR4302534.4336995/94‑1 (MQ=60)
                                              TGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGA                                                <  SRR4302534.6595832/94‑1 (MQ=60)
                                              TGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGA                                                >  SRR4302534.492972/1‑94 (MQ=60)
                                               GCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGAT                                               <  SRR4302534.2231669/94‑1 (MQ=60)
                                                CGCCATATTTACCCAGGCCGTTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAATATATTTTTTCCTGCCAGTGAAAATAGATC                                              <  SRR4302534.3413698/94‑1 (MQ=60)
                                                   CATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTT                                           <  SRR4302534.5711741/94‑1 (MQ=60)
                                                    ATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTC                                          <  SRR4302534.4911114/94‑1 (MQ=60)
                                                    ATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTC                                          <  SRR4302534.1360790/94‑1 (MQ=60)
                                                     TATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCA                                         >  SRR4302534.6116972/1‑94 (MQ=60)
                                                      ATTTGCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAT                                        <  SRR4302534.143876/94‑1 (MQ=60)
                                                      ATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAT                                        <  SRR4302534.2891580/94‑1 (MQ=60)
                                                      ATTTACACAGGCCGGTTGCCAGTAAAAAACCGATGCCCCGTGCTGAACAGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCAT                                        <  SRR4302534.5745112/94‑1 (MQ=60)
                                                       TTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATT                                       <  SRR4302534.503367/94‑1 (MQ=60)
                                                       TTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATT                                       <  SRR4302534.5416195/94‑1 (MQ=60)
                                                         TACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAATATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGT                                     <  SRR4302534.562871/94‑1 (MQ=60)
                                                         TACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGT                                     <  SRR4302534.1058792/94‑1 (MQ=60)
                                                         TACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGT                                     >  SRR4302534.4654659/1‑94 (MQ=60)
                                                         TACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGT                                     >  SRR4302534.2967845/1‑94 (MQ=60)
                                                          ACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTA                                    <  SRR4302534.5800687/94‑1 (MQ=60)
                                                           CCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTAT                                   <  SRR4302534.4516257/94‑1 (MQ=60)
                                                           CCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTAT                                   >  SRR4302534.5327422/1‑94 (MQ=60)
                                                              AGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTAT                                >  SRR4302534.161615/1‑94 (MQ=60)
                                                              AGGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTAT                                >  SRR4302534.3685680/1‑94 (MQ=60)
                                                               GGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATT                               >  SRR4302534.2216054/1‑94 (MQ=60)
                                                               GGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATT                               >  SRR4302534.5886666/1‑94 (MQ=60)
                                                               GGCCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATT                               >  SRR4302534.4160698/1‑94 (MQ=60)
                                                                 CCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCC                             >  SRR4302534.1755740/1‑94 (MQ=60)
                                                                 CCGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCC                             >  SRR4302534.4170050/1‑94 (MQ=60)
                                                                  CGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCT                            <  SRR4302534.5688249/94‑1 (MQ=60)
                                                                  CGGTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGCATTATTCCT                            >  SRR4302534.1953563/1‑94 (MQ=60)
                                                                  CGATTGCAAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATTTTTTTTCCTGCCAGTGAAAATAGAGCGTTCATTGTATTATTCCT                            <  SRR4302534.3455519/94‑1 (MQ=60)
                                                                    GTTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTT                          <  SRR4302534.3653203/94‑1 (MQ=60)
                                                                     TTGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTA                         >  SRR4302534.2125563/1‑94 (MQ=60)
                                                                      TGCCAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTCCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTAT                        <  SRR4302534.1710192/94‑1 (MQ=60)
                                                                       GCCAGTAAAAAGCCAAGGCCCCGTGCTGAGCCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATT                       <  SRR4302534.3782200/94‑1 (MQ=60)
                                                                         CAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTT                     >  SRR4302534.4832953/1‑94 (MQ=60)
                                                                         CAGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTA                     <  SRR4302534.597557/94‑1 (MQ=60)
                                                                          AGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAT                    >  SRR4302534.2899468/1‑94 (MQ=60)
                                                                          AGTAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAT                    <  SRR4302534.3943074/94‑1 (MQ=60)
                                                                          AGTAAAAACCCAATGCCCCGTGCGGAACCGGTAATCAAGATATTTTGTCCGGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAT                    <  SRR4302534.1518560/94‑1 (MQ=60)
                                                                            TAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCT                  <  SRR4302534.6570180/94‑1 (MQ=60)
                                                                            TAAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCT                  <  SRR4302534.704739/94‑1 (MQ=60)
                                                                             AAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTC                 <  SRR4302534.3982416/94‑1 (MQ=60)
                                                                             AAAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTC                 >  SRR4302534.3785235/1‑94 (MQ=60)
                                                                              AAAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCT                <  SRR4302534.3607732/94‑1 (MQ=60)
                                                                               AAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTT               >  SRR4302534.1383722/1‑94 (MQ=60)
                                                                               AAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTT               >  SRR4302534.5885084/1‑94 (MQ=60)
                                                                               AAAGCCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTT               <  SRR4302534.4259035/94‑1 (MQ=60)
                                                                                   CCAATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAA           <  SRR4302534.3087494/94‑1 (MQ=60)
                                                                                     AATGCCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAA         <  SRR4302534.43858/94‑1 (MQ=60)
                                                                                        GCCCCGTGCGGAACCGGTGATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAA      <  SRR4302534.6290068/94‑1 (MQ=60)
                                                                                         CCCCGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAG     >  SRR4302534.1679683/1‑94 (MQ=60)
                                                                                            CGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTG  <  SRR4302534.5488429/94‑1 (MQ=60)
                                                                                            |                                                                                             
CAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTG  >  NC_000913/4490772‑4490957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑