Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,632,259 |
T→C |
A207A (GCA→GCG) |
rob ← |
right origin‑binding protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,632,259 | 0 | T | C | 100.0%
| 1082.2
/ NA
| 314 | A207A (GCA→GCG) | rob | right origin‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (168/146); total (168/146) |
Only 100 of 326 total aligned reads displayed.
CTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCAC > NC_000913/4632169‑4632351
|
cACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTg > 1:2116887/1‑93 (MQ=255)
cGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGAt < 2:5163255/93‑1 (MQ=255)
gCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATc < 1:4744072/93‑1 (MQ=255)
ccGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATcc < 2:3629966/93‑1 (MQ=255)
ccGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATcc < 1:4395289/93‑1 (MQ=255)
cGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCt < 1:3842921/93‑1 (MQ=255)
ggTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTg < 2:3450491/93‑1 (MQ=255)
gTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTgg > 1:1027664/1‑93 (MQ=255)
gTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTgg > 2:2538072/1‑93 (MQ=255)
gTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTgg > 2:6200576/1‑93 (MQ=255)
gTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTgg > 2:7969769/1‑93 (MQ=255)
ttCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTggg < 1:2787473/93‑1 (MQ=255)
ccAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTa < 2:171953/93‑1 (MQ=255)
ccAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTa > 1:330658/1‑93 (MQ=255)
aGACCTTCATAGGGAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGCCAGTACATAGCCATCCGCCTGATCCTGGGCTAAc > 2:2395864/1‑93 (MQ=255)
gACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAAcg > 1:2980976/1‑93 (MQ=255)
gACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAAcg > 2:8634686/1‑93 (MQ=255)
ttCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCggt > 2:8474776/1‑93 (MQ=255)
ttCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCggt < 2:6078706/93‑1 (MQ=255)
ttCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCggt > 2:3078845/1‑93 (MQ=255)
ttCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCggt > 1:75440/1‑93 (MQ=255)
aTAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCggtggt < 2:2899819/93‑1 (MQ=255)
tAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGta > 2:5687932/1‑93 (MQ=255)
tAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGta < 1:4044431/93‑1 (MQ=255)
aGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGtat > 1:7883962/1‑93 (MQ=255)
ggTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGtata < 2:1266835/93‑1 (MQ=255)
aaaCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGaa < 1:3879182/93‑1 (MQ=255)
aaaCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGaa < 1:8440463/93‑1 (MQ=255)
aaaCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGaa < 2:8160367/93‑1 (MQ=255)
aaCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAAt > 1:6655613/1‑93 (MQ=255)
aCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATa > 2:8405940/1‑93 (MQ=255)
aCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATa < 2:5023949/93‑1 (MQ=255)
aCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATa < 2:68301/93‑1 (MQ=255)
aCATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATa > 2:6686779/1‑93 (MQ=255)
cATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATAc > 2:8708135/1‑93 (MQ=255)
cATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATAc < 2:6561133/93‑1 (MQ=255)
cacaTATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACctc < 2:6890722/93‑1 (MQ=255)
acaTATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACctct < 2:4848836/93‑1 (MQ=255)
caTATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCtt < 1:7170390/93‑1 (MQ=255)
caTATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCtt < 1:5550858/93‑1 (MQ=255)
caTATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGCATAGAATACCTCtt > 2:1900859/1‑93 (MQ=255)
atTCGCCGCCCTGCAGCATCACCGGATGCGCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCt < 2:5914034/93‑1 (MQ=255)
atTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCt > 2:5402099/1‑93 (MQ=255)
ttCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtc > 1:8566334/1‑93 (MQ=255)
tCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtcg > 1:6934890/1‑93 (MQ=255)
tCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtcg > 2:8292399/1‑93 (MQ=255)
cgccgcCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtcgt < 2:4588439/93‑1 (MQ=255)
gccgccCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtcgtc > 1:1206985/1‑93 (MQ=255)
gccgccCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtcgtc > 2:4234413/1‑93 (MQ=255)
gccgccCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtcgtc < 1:5361787/93‑1 (MQ=255)
cccgccCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCtcgtc < 2:6432255/92‑1 (MQ=255)
gccCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCgtcgtc > 2:2089018/1‑93 (MQ=255)
gccCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCgtcgtc < 1:2850607/93‑1 (MQ=255)
gccCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCgtcgtc > 1:3090538/1‑93 (MQ=255)
cccTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCt > 1:6423225/1‑93 (MQ=255)
cccTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCt > 1:7418178/1‑93 (MQ=255)
ccTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCtt < 2:7721460/93‑1 (MQ=255)
ccTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCtt > 2:7603539/1‑93 (MQ=255)
cTGCAGCATCCCCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCttt < 1:450620/93‑1 (MQ=255)
tGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTa < 1:4865283/93‑1 (MQ=255)
gcagcaTCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTAt < 1:5944596/93‑1 (MQ=255)
gcagcaTCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTAt > 2:4460195/1‑93 (MQ=255)
cagcaTCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATc < 1:3968184/93‑1 (MQ=255)
agcaTCTCCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATTCCTCTTGCTCGTCGTCTTTATcc < 2:1581798/93‑1 (MQ=255)
agcaTCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATcc < 2:7102572/93‑1 (MQ=255)
gcaTCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCTTCTTTATCCt < 1:6133389/93‑1 (MQ=255)
gcaTCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCt > 1:3655044/1‑93 (MQ=255)
gcaTCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCt > 1:1795019/1‑93 (MQ=255)
tCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGAc > 1:1570967/1‑93 (MQ=255)
tCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGAc < 1:5495126/93‑1 (MQ=255)
tCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGAc > 2:317136/1‑93 (MQ=255)
tCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAAGACCTCTTGCTCGTCGTCTTTATCCTGAc > 2:4325069/1‑93 (MQ=255)
cccGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTc < 2:1757373/92‑1 (MQ=255)
ccGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCg < 1:7795994/93‑1 (MQ=255)
ccGGATGCCCCGTCAGTACATAGCAATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCg < 1:72374/93‑1 (MQ=255)
ggATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGa < 2:7924771/93‑1 (MQ=255)
gATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGAc > 2:8661705/1‑93 (MQ=255)
gATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGAc > 1:8208030/1‑93 (MQ=255)
aTGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGAcg < 1:3453112/93‑1 (MQ=255)
tgtcccGTCAGTACATAGCCATCCGCCTGATCCTGAGCTAACGGGGTGGTATAGAATTCCTCTTGCTCGTCGTCTTTATCCTGACTCGGAcgc < 2:1113541/90‑1 (MQ=255)
ccccGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGt < 1:3371989/93‑1 (MQ=255)
ccccGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGt > 2:6298149/1‑93 (MQ=255)
ccccGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTAGAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGt < 1:1732187/93‑1 (MQ=255)
cccGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGtt > 2:7268360/1‑93 (MQ=255)
ccGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGttt < 2:3327112/93‑1 (MQ=255)
gTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACTCGTttct > 2:3675541/1‑92 (MQ=255)
gTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTttca > 1:2352062/1‑93 (MQ=255)
gTCAGTACATAGCCATCCGCCTGAACCTGGGCTAACGCGGTGGTATAGAATACCTGTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTttca < 1:5803810/93‑1 (MQ=255)
aGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTAGCCTGACTCGGACGCGTttcattc > 2:4737229/1‑93 (MQ=255)
cATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGGTCGTCGTCTTTATCCTGACTCGGTCGCGTTTCCTTCAGGc > 1:6057367/1‑93 (MQ=255)
aTAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGcc > 1:3735659/1‑93 (MQ=255)
aTAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGcc > 1:5042856/1‑93 (MQ=255)
aTAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGcc < 1:79448/93‑1 (MQ=255)
tAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCg < 1:135199/93‑1 (MQ=255)
gCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTa < 1:1448560/93‑1 (MQ=255)
cATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTaga < 1:7989056/93‑1 (MQ=255)
cATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCATaga < 2:6401722/93‑1 (MQ=255)
cATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATAACTCTTGCTCGTCGTCTTTATCCTGACTAGGACGCGTTTCATTCAGGCCGTagc > 2:5431552/1‑92 (MQ=255)
aTCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTagag > 2:2817400/1‑93 (MQ=255)
aTCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTagag < 1:5230110/93‑1 (MQ=255)
|
CTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCAC > NC_000913/4632169‑4632351
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACC > NC_000913/4632166‑4632352
|
CTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCC < SRR4302541.272214/94‑1 (MQ=60)
CTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCC > SRR4302541.6142404/1‑94 (MQ=60)
CTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCC < SRR4302541.6078953/94‑1 (MQ=60)
TCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCG > SRR4302541.2400535/1‑94 (MQ=60)
TCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCG > SRR4302541.4106729/1‑94 (MQ=60)
CCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGC > SRR4302541.6626569/1‑94 (MQ=60)
CTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCC > SRR4302541.1582792/1‑94 (MQ=60)
CTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCC < SRR4302541.2195141/94‑1 (MQ=60)
TGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCT > SRR4302541.5189464/1‑94 (MQ=60)
TGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCT < SRR4302541.5761128/94‑1 (MQ=60)
GCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTG > SRR4302541.2137385/1‑94 (MQ=60)
CACGCCGGTTCCCAGACCTTCATAGGCAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGA > SRR4302541.4754082/1‑94 (MQ=60)
ACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGAT > SRR4302541.1504107/1‑94 (MQ=60)
CGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATC < SRR4302541.742528/94‑1 (MQ=60)
GCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCC < SRR4302541.4792523/94‑1 (MQ=60)
GCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCC < SRR4302541.790623/94‑1 (MQ=60)
GCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCC > SRR4302541.4072612/1‑94 (MQ=60)
GCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCC > SRR4302541.6781765/1‑94 (MQ=60)
cgtgcacccagaccataagaagaaaaccccaaatctgcgccccccgGCAGCATCCCCGGATCCCCCGTCAGTACATAGCCATCCGCCTGATCCT < SRR4302541.645482/48‑1 (MQ=60)
CCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCT < SRR4302541.4439254/94‑1 (MQ=60)
CGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTG < SRR4302541.3881627/94‑1 (MQ=60)
GGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGG > SRR4302541.3957570/1‑94 (MQ=60)
GGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGG > SRR4302541.284064/1‑94 (MQ=60)
GGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGG < SRR4302541.3848346/94‑1 (MQ=60)
GGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGG > SRR4302541.3568221/1‑94 (MQ=60)
GGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGG > SRR4302541.1037157/1‑94 (MQ=60)
GGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGG > SRR4302541.7263890/1‑94 (MQ=60)
TTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGC < SRR4302541.2815592/94‑1 (MQ=60)
GTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGC < SRR4302541.2815591/94‑1 (MQ=60)
CCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTA > SRR4302541.333625/1‑94 (MQ=60)
CCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAA > SRR4302541.4838522/1‑94 (MQ=60)
CAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAAC < SRR4302541.3457827/94‑1 (MQ=60)
CAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAAC > SRR4302541.3017285/1‑94 (MQ=60)
AGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACG > SRR4302541.7724724/1‑94 (MQ=60)
AGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACG > SRR4302541.3011043/1‑94 (MQ=60)
ACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCG > SRR4302541.592869/1‑94 (MQ=60)
CCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGG > SRR4302541.796597/1‑94 (MQ=60)
CCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGG < SRR4302541.5353056/94‑1 (MQ=60)
CTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGT > SRR4302541.76082/1‑94 (MQ=60)
CTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGT > SRR4302541.3348519/1‑94 (MQ=60)
CTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGT > SRR4302541.7728178/1‑94 (MQ=60)
CTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGT > SRR4302541.7535573/1‑94 (MQ=60)
TCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGG > SRR4302541.1638303/1‑94 (MQ=60)
CATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGT > SRR4302541.112225/1‑94 (MQ=60)
TAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTAT > SRR4302541.6560170/1‑94 (MQ=60)
TAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTAT > SRR4302541.7970624/1‑94 (MQ=60)
TAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTAT < SRR4302541.4084356/94‑1 (MQ=60)
TAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTAT > SRR4302541.5240697/1‑94 (MQ=60)
GGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAG < SRR4302541.2985473/94‑1 (MQ=60)
GGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAG < SRR4302541.8233883/94‑1 (MQ=60)
TAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAA > SRR4302541.8627354/1‑94 (MQ=60)
AAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAAT < SRR4302541.5011048/94‑1 (MQ=60)
AAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAAT < SRR4302541.3918140/94‑1 (MQ=60)
AAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAAT < SRR4302541.5011047/94‑1 (MQ=60)
AAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAAT > SRR4302541.6723893/1‑94 (MQ=60)
AAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAAT < SRR4302541.8531624/94‑1 (MQ=60)
AAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAAAAT > SRR4302541.2609996/1‑94 (MQ=60)
CATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACC > SRR4302541.8056328/1‑94 (MQ=60)
ATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCT > SRR4302541.2258089/1‑94 (MQ=60)
ATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCT > SRR4302541.3148888/1‑94 (MQ=60)
TCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTC < SRR4302541.4032162/94‑1 (MQ=60)
TCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTC > SRR4302541.7052951/1‑94 (MQ=60)
TCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTAAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTC < SRR4302541.1371411/94‑1 (MQ=60)
CACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCT > SRR4302541.1044396/1‑94 (MQ=60)
ACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTT < SRR4302541.6433902/94‑1 (MQ=60)
ACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTT < SRR4302541.6026805/94‑1 (MQ=60)
CATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTG < SRR4302541.5607683/94‑1 (MQ=60)
CATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTG < SRR4302541.7246831/94‑1 (MQ=60)
ATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGC > SRR4302541.6155639/1‑94 (MQ=60)
ATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGC > SRR4302541.3898390/1‑94 (MQ=60)
ATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGC > SRR4302541.5240732/1‑94 (MQ=60)
TATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCT < SRR4302541.5871525/94‑1 (MQ=60)
ATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTC > SRR4302541.8658352/1‑94 (MQ=60)
TTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCG > SRR4302541.7008879/1‑94 (MQ=60)
TCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGT < SRR4302541.2242585/94‑1 (MQ=60)
CGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTG > SRR4302541.7255978/1‑94 (MQ=60)
CGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTC > SRR4302541.1218721/1‑94 (MQ=60)
CGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTC < SRR4302541.3617754/94‑1 (MQ=60)
CGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTC < SRR4302541.5454474/94‑1 (MQ=60)
GCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCG < SRR4302541.5416855/94‑1 (MQ=60)
GCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCG > SRR4302541.3341143/1‑94 (MQ=60)
GCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCG < SRR4302541.2906243/94‑1 (MQ=60)
GCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCG < SRR4302541.3723092/94‑1 (MQ=60)
CCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGGTCGTCGT > SRR4302541.5569969/1‑94 (MQ=60)
CGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTC > SRR4302541.308585/1‑94 (MQ=60)
CGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTC < SRR4302541.4270732/94‑1 (MQ=60)
CGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTC > SRR4302541.3121884/1‑94 (MQ=60)
cccctccaggctcacagcATGCCCCGTCAGTACATAGCCATCCGCCGGATCCTGGGCGAACGCGGTTGTATAGAATCCCTCTTGCTCGTCGTCT < SRR4302541.7797821/76‑1 (MQ=60)
GCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCT < SRR4302541.2879273/94‑1 (MQ=60)
GCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCT > SRR4302541.6488703/1‑94 (MQ=60)
GCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCT > SRR4302541.3909629/1‑94 (MQ=60)
GCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCT > SRR4302541.7497502/1‑94 (MQ=60)
GCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTT < SRR4302541.3561395/94‑1 (MQ=60)
CCCTGCAGCATCCCCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTT < SRR4302541.5693747/94‑1 (MQ=60)
CCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTT > SRR4302541.8496810/1‑94 (MQ=60)
CCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTT < SRR4302541.1882609/94‑1 (MQ=60)
CCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTT > SRR4302541.1297910/1‑94 (MQ=60)
CCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTT > SRR4302541.7977942/1‑94 (MQ=60)
CCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTT < SRR4302541.7556028/94‑1 (MQ=60)
CCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTT < SRR4302541.1613932/94‑1 (MQ=60)
CTGCAGCATCCCCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTA < SRR4302541.454920/94‑1 (MQ=60)
CTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTA < SRR4302541.6292035/94‑1 (MQ=60)
TGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGGTCGTCGTCTTTAT > SRR4302541.3981351/1‑94 (MQ=60)
TGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTAT < SRR4302541.4914917/94‑1 (MQ=60)
TGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTAT > SRR4302541.5365876/1‑94 (MQ=60)
TGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGGATAGAATACCTCTTGCTCGTCGTCTTTAT > SRR4302541.5464624/1‑94 (MQ=60)
CGCAGCAACACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTAT < SRR4302541.1797150/94‑1 (MQ=60)
GCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATC < SRR4302541.6005167/94‑1 (MQ=60)
CAGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCC < SRR4302541.4007578/94‑1 (MQ=60)
AGCATCACCGGATTCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCT > SRR4302541.1811718/1‑94 (MQ=60)
AGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCT > SRR4302541.3692122/1‑94 (MQ=60)
AGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCT > SRR4302541.1812444/1‑94 (MQ=60)
AGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCT > SRR4302541.7238676/1‑94 (MQ=60)
AGCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCT < SRR4302541.5566775/94‑1 (MQ=60)
GCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCTTCTTTATCCTG < SRR4302541.6196016/94‑1 (MQ=60)
GCATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTG < SRR4302541.3109673/94‑1 (MQ=60)
ATCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGAC > SRR4302541.1586688/1‑94 (MQ=60)
TCACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACT < SRR4302541.5551432/94‑1 (MQ=60)
ACCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCG > SRR4302541.4485068/1‑94 (MQ=60)
CCGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGG < SRR4302541.7879725/94‑1 (MQ=60)
CCGGATGCCCCGTCAGTACATAGCAATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGG < SRR4302541.72984/94‑1 (MQ=60)
CGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATTCCTCCTGCTCGTCGTCTTTATCCTGGCTCGGG > SRR4302541.3122343/1‑94 (MQ=60)
CGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCTGA > SRR4302541.6153876/1‑94 (MQ=60)
CGGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGA > SRR4302541.400212/1‑94 (MQ=60)
GGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGGTCGTCGTCTTTATCCTGACTCGGAC < SRR4302541.8595719/94‑1 (MQ=60)
GGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGAC > SRR4302541.8297585/1‑94 (MQ=60)
GGATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGGATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGAC > SRR4302541.3836130/1‑94 (MQ=60)
ATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGC < SRR4302541.3487612/94‑1 (MQ=60)
ATGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGC > SRR4302541.8035188/1‑94 (MQ=60)
TGCCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCG < SRR4302541.5640832/94‑1 (MQ=60)
CCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTT < SRR4302541.3405613/94‑1 (MQ=60)
CCCCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTAGAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTT < SRR4302541.1749103/94‑1 (MQ=60)
CCCGTCAGTACATAGCCATCCGCCTGAGCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTT < SRR4302541.1268504/94‑1 (MQ=60)
CCGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTC < SRR4302541.2848581/94‑1 (MQ=60)
CGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCA < SRR4302541.6934888/94‑1 (MQ=60)
CGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCA < SRR4302541.3740788/94‑1 (MQ=60)
CGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCA > SRR4302541.2374943/1‑94 (MQ=60)
CGTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCA > SRR4302541.4543632/1‑94 (MQ=60)
GTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCAT > SRR4302541.8333309/1‑94 (MQ=60)
GTCAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCAT < SRR4302541.4735420/94‑1 (MQ=60)
GTCAGTACATAGCCATCCGCCTGAACCTGGGCTAACGCGGTGGTATAGAATACCTGTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCAT < SRR4302541.5862749/94‑1 (MQ=60)
CAGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTC < SRR4302541.972528/94‑1 (MQ=60)
AGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCA > SRR4302541.7939388/1‑94 (MQ=60)
AGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCA > SRR4302541.7939389/1‑94 (MQ=60)
AGTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCA < SRR4302541.7348043/94‑1 (MQ=60)
GTACATAGCCATCCGGCTGATCCTGGGGTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTACCCTGACTCGGACGCGTTTCATTCAG < SRR4302541.1917783/94‑1 (MQ=60)
GTACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAG > SRR4302541.467856/1‑94 (MQ=60)
TACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGG > SRR4302541.4118382/1‑94 (MQ=60)
ACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGGTCGTCGTCTTTATCCTGACTCGGTCGCGTTTCCTTCAGGC > SRR4302541.6119265/1‑94 (MQ=60)
ACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGC > SRR4302541.154619/1‑94 (MQ=60)
ACATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCACGC > SRR4302541.348102/1‑94 (MQ=60)
CATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCC > SRR4302541.3773266/1‑94 (MQ=60)
CATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCC < SRR4302541.6005734/94‑1 (MQ=60)
CATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCC > SRR4302541.5094747/1‑94 (MQ=60)
ATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCG < SRR4302541.80128/94‑1 (MQ=60)
ATAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCG < SRR4302541.8326309/94‑1 (MQ=60)
ATAGCCAGCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCG < SRR4302541.6269759/94‑1 (MQ=60)
TAGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGT < SRR4302541.136253/94‑1 (MQ=60)
AGCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTA > SRR4302541.4911135/1‑94 (MQ=60)
GCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAG < SRR4302541.7263540/94‑1 (MQ=60)
GCCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAG < SRR4302541.1462653/94‑1 (MQ=60)
ACCATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAG < SRR4302541.1407467/94‑1 (MQ=60)
CATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAG < SRR4302541.8077022/94‑1 (MQ=60)
ATCCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGC < SRR4302541.5284003/94‑1 (MQ=60)
ATCCGCCTGATCCTGGGCTAACCCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGC > SRR4302541.1513161/1‑94 (MQ=60)
CCGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCAC > SRR4302541.3586788/1‑94 (MQ=60)
TGCGTGATCCTGGGCTCACGCGGTGGTCTAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACC < SRR4302541.8179553/94‑1 (MQ=60)
CGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACC > SRR4302541.1701672/1‑94 (MQ=60)
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CTCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACC > NC_000913/4632166‑4632352
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |